No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g08611 |
| malus_domestica | MD04G1185000.v1.1 MD12G1198800.v1.1 |
| prunus_persica | Prupe.6G303400_v2.0.a1 |
| pyrus_communis | pycom12g18520 |
| rosa_chinensis | RchiOBHm_Chr3g0458711 |
| rosa_laevigata | RLG00000025140 |
| rosa_multiflora | Rmu_sc0001634.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00420850 |
| rosa_rugosa | Rorug03G0031400 |
| rosa_samantha | Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800 |
| rosa_wichuraiana | Rw3G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 43, 2200, 2466 |
| AccB1I | GGYRCC | 1 cut(s) | 1519 |
| AciI | CCGC | 4 cut(s) | 1838, 1946, 2195, 2421 |
| AclWI | GGATC | 2 cut(s) | 430, 1956 |
| AcsI | RAATTY | 2 cut(s) | 1761, 2012 |
| AcuI | CTGAAG | 6 cut(s) | 201, 717, 747, 882, 2166, 2472 |
| AcyI | GRCGYC | 1 cut(s) | 1119 |
| AfaI | GTAC | 1 cut(s) | 2242 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 445, 844 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 613, 2443 |
| AjnI | CCWGG | 3 cut(s) | 712, 2236, 2566 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1215, 1247 |
| Alw26I | GTCTC | 8 cut(s) | 253, 355, 740, 1241, 1388, 1553, 1826, 2225 |
| AlwI | GGATC | 2 cut(s) | 430, 1956 |
| AoxI | GGCC | 1 cut(s) | 809 |
| ApeKI | GCWGC | 4 cut(s) | 344, 815, 1199, 1685 |
| ApoI | RAATTY | 2 cut(s) | 1761, 2012 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1131 |
| AspS9I | GGNCC | 2 cut(s) | 809, 1144 |
| AsuC2I | CCSGG | 2 cut(s) | 440, 2557 |
| AsuHPI | GGTGA | 6 cut(s) | 15, 79, 808, 1852, 2363, 2444 |
| AsuNHI | GCTAGC | 1 cut(s) | 1990 |
| AvaII | GGWCC | 1 cut(s) | 1144 |
| BanI | GGYRCC | 1 cut(s) | 1519 |
| BbsI | GAAGAC | 1 cut(s) | 2460 |
| BbvCI | CCTCAGC | 1 cut(s) | 225 |
| BbvI | GCAGC | 4 cut(s) | 331, 827, 1211, 1697 |
| BccI | CCATC | 7 cut(s) | 92, 730, 1088, 1727, 2149, 2338, 2423 |
| BceAI | ACGGC | 1 cut(s) | 1851 |
| BciT130I | CCWGG | 3 cut(s) | 714, 2238, 2568 |
| BclI | TGATCA | 1 cut(s) | 2401 |
| BcnI | CCSGG | 2 cut(s) | 440, 2557 |
| BcoDI | GTCTC | 8 cut(s) | 253, 355, 740, 1241, 1388, 1553, 1826, 2225 |
| BfmI | CTRYAG | 5 cut(s) | 213, 468, 498, 813, 1674 |
| BfuAI | ACCTGC | 3 cut(s) | 43, 2200, 2466 |
| BisI | GCNGC | 5 cut(s) | 345, 816, 1200, 1686, 2196 |
| BlpI | GCTNAGC | 1 cut(s) | 2478 |
| BlsI | GCNGC | 5 cut(s) | 346, 817, 1201, 1687, 2197 |
| Bme1390I | CCNGG | 5 cut(s) | 440, 714, 2238, 2557, 2568 |
| Bme18I | GGWCC | 1 cut(s) | 1144 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 613, 2443 |
| BmgT120I | GGNCC | 2 cut(s) | 809, 1144 |
| BmiI | GGNNCC | 1 cut(s) | 1521 |
| BmrFI | CCNGG | 5 cut(s) | 440, 714, 2238, 2557, 2568 |
| BmsI | GCATC | 9 cut(s) | 29, 229, 331, 415, 491, 535, 1364, 1483, 1990 |
| BmtI | GCTAGC | 1 cut(s) | 1994 |
| BpiI | GAAGAC | 1 cut(s) | 2460 |
| BpmI | CTGGAG | 7 cut(s) | 614, 677, 986, 1053, 1421, 1586, 2550 |
| Bpu10I | CCTNAGC | 1 cut(s) | 225 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2478 |
| BpuEI | CTTGAG | 2 cut(s) | 720, 776 |
| BpuMI | CCSGG | 2 cut(s) | 440, 2557 |
| BsaHI | GRCGYC | 1 cut(s) | 1119 |
| BsaJI | CCNNGG | 1 cut(s) | 2595 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1215, 1245 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 445, 844 |
| Bse1I | ACTGG | 4 cut(s) | 581, 597, 660, 1523 |
| BseBI | CCWGG | 3 cut(s) | 714, 2238, 2568 |
| BseDI | CCNNGG | 1 cut(s) | 2595 |
| BseGI | GGATG | 6 cut(s) | 793, 1738, 1786, 2290, 2392, 2605 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 445, 844 |
| BseNI | ACTGG | 4 cut(s) | 581, 597, 660, 1523 |
| BseRI | GAGGAG | 5 cut(s) | 242, 458, 540, 773, 1239 |
| BseXI | GCAGC | 4 cut(s) | 331, 827, 1211, 1697 |
| BsgI | GTGCAG | 2 cut(s) | 803, 2072 |
| BshFI | GGCC | 1 cut(s) | 811 |
| BshNI | GGYRCC | 1 cut(s) | 1519 |
| BsiSI | CCGG | 2 cut(s) | 440, 2556 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 445, 844 |
| BsmAI | GTCTC | 8 cut(s) | 253, 355, 740, 1241, 1388, 1553, 1826, 2225 |
| BsmBI | CGTCTC | 1 cut(s) | 1826 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 1 cut(s) | 811 |
| Bsp143I | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2478 |
| BspACI | CCGC | 4 cut(s) | 1838, 1946, 2195, 2421 |
| BspANI | GGCC | 1 cut(s) | 811 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspLI | GGNNCC | 1 cut(s) | 1521 |
| BspMAI | CTGCAG | 2 cut(s) | 817, 1678 |
| BspMI | ACCTGC | 3 cut(s) | 43, 2200, 2466 |
| BspOI | GCTAGC | 1 cut(s) | 1994 |
| BspPI | GGATC | 2 cut(s) | 430, 1956 |
| BspT107I | GGYRCC | 1 cut(s) | 1519 |
| BsrI | ACTGG | 4 cut(s) | 581, 597, 660, 1523 |
| BssECI | CCNNGG | 1 cut(s) | 2595 |
| BssMI | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| BssNI | GRCGYC | 1 cut(s) | 1119 |
| BssT1I | CCWWGG | 1 cut(s) | 2595 |
| Bst2UI | CCWGG | 3 cut(s) | 714, 2238, 2568 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 628, 1132, 1540, 2245 |
| BstACI | GRCGYC | 1 cut(s) | 1119 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2000 |
| BstC8I | GCNNGC | 5 cut(s) | 782, 813, 1509, 1674, 1992 |
| BstF5I | GGATG | 6 cut(s) | 793, 1738, 1786, 2290, 2392, 2605 |
| BstKTI | GATC | 4 cut(s) | 193, 438, 1951, 2404 |
| BstMAI | GTCTC | 8 cut(s) | 253, 355, 740, 1241, 1388, 1553, 1826, 2225 |
| BstMBI | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 344, 718, 1352, 1517, 1682, 2000, 2335 |
| BstNI | CCWGG | 3 cut(s) | 714, 2238, 2568 |
| BstSCI | CCNGG | 5 cut(s) | 438, 712, 2236, 2555, 2566 |
| BstSFI | CTRYAG | 5 cut(s) | 213, 468, 498, 813, 1674 |
| BstV1I | GCAGC | 4 cut(s) | 331, 827, 1211, 1697 |
| BstV2I | GAAGAC | 1 cut(s) | 2460 |
| BstX2I | RGATCY | 1 cut(s) | 435 |
| BstYI | RGATCY | 1 cut(s) | 435 |
| BsuRI | GGCC | 1 cut(s) | 811 |
| BtsCI | GGATG | 6 cut(s) | 793, 1738, 1786, 2290, 2392, 2605 |
| BtsI | GCAGTG | 2 cut(s) | 1209, 1695 |
| BtsIMutI | CAGTG | 4 cut(s) | 590, 624, 1209, 1695 |
| BveI | ACCTGC | 3 cut(s) | 43, 2200, 2466 |
| Cac8I | GCNNGC | 5 cut(s) | 782, 813, 1509, 1674, 1992 |
| CciI | TCATGA | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 2 cut(s) | 809, 1144 |
| CseI | GACGC | 1 cut(s) | 1127 |
| CsiI | ACCWGGT | 1 cut(s) | 2236 |
| Csp6I | GTAC | 1 cut(s) | 2241 |
| CviAII | CATG | 2 cut(s) | 194, 938 |
| CviQI | GTAC | 1 cut(s) | 2241 |
| DpnI | GATC | 4 cut(s) | 192, 437, 1950, 2403 |
| DpnII | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| DriI | GACNNNNNGTC | 2 cut(s) | 613, 2443 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 613, 2443 |
| Eco130I | CCWWGG | 1 cut(s) | 2595 |
| Eco47I | GGWCC | 1 cut(s) | 1144 |
| Eco57I | CTGAAG | 6 cut(s) | 201, 717, 747, 882, 2166, 2472 |
| EcoO109I | RGGNCCY | 1 cut(s) | 809 |
| EcoRII | CCWGG | 3 cut(s) | 712, 2236, 2566 |
| EcoT14I | CCWWGG | 1 cut(s) | 2595 |
| ErhI | CCWWGG | 1 cut(s) | 2595 |
| Esp3I | CGTCTC | 1 cut(s) | 1826 |
| FaeI | CATG | 2 cut(s) | 197, 941 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 120, 152 |
| FatI | CATG | 2 cut(s) | 193, 937 |
| FauI | CCCGC | 1 cut(s) | 2428 |
| FauNDI | CATATG | 1 cut(s) | 562 |
| FbaI | TGATCA | 1 cut(s) | 2401 |
| Fnu4HI | GCNGC | 5 cut(s) | 345, 816, 1200, 1686, 2196 |
| FokI | GGATG | 6 cut(s) | 800, 1745, 1793, 2297, 2399, 2612 |
| Fsp4HI | GCNGC | 5 cut(s) | 345, 816, 1200, 1686, 2196 |
| GluI | GCNGC | 5 cut(s) | 345, 816, 1200, 1686, 2196 |
| GsuI | CTGGAG | 7 cut(s) | 614, 677, 986, 1053, 1421, 1586, 2550 |
| HaeIII | GGCC | 1 cut(s) | 811 |
| HapII | CCGG | 2 cut(s) | 440, 2556 |
| HgaI | GACGC | 1 cut(s) | 1127 |
| Hin1I | GRCGYC | 1 cut(s) | 1119 |
| Hin1II | CATG | 2 cut(s) | 197, 941 |
| HincII | GTYRAC | 2 cut(s) | 1934, 2122 |
| HindII | GTYRAC | 2 cut(s) | 1934, 2122 |
| HindIII | AAGCTT | 2 cut(s) | 752, 1005 |
| HpaII | CCGG | 2 cut(s) | 440, 2556 |
| HphI | GGTGA | 6 cut(s) | 15, 79, 808, 1852, 2363, 2444 |
| Hpy166II | GTNNAC | 4 cut(s) | 1487, 1652, 1934, 2122 |
| Hpy8I | GTNNAC | 4 cut(s) | 1487, 1652, 1934, 2122 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 628, 1132, 1540, 2245 |
| HpyCH4IV | ACGT | 2 cut(s) | 1719, 2130 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 344, 718, 1352, 1517, 1682, 2000, 2335 |
| HpySE526I | ACGT | 2 cut(s) | 1719, 2130 |
| Hsp92I | GRCGYC | 1 cut(s) | 1119 |
| Hsp92II | CATG | 2 cut(s) | 197, 941 |
| Ksp22I | TGATCA | 1 cut(s) | 2401 |
| Kzo9I | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| LmnI | GCTCC | 5 cut(s) | 247, 553, 950, 1097, 2171 |
| Lsp1109I | GCAGC | 4 cut(s) | 331, 827, 1211, 1697 |
| LweI | GCATC | 9 cut(s) | 29, 229, 331, 415, 491, 535, 1364, 1483, 1990 |
| MabI | ACCWGGT | 1 cut(s) | 2236 |
| MaeII | ACGT | 2 cut(s) | 1719, 2130 |
| MaeIII | GTNAC | 9 cut(s) | 389, 598, 730, 1159, 1267, 1597, 2290, 2302, 2362 |
| MalI | GATC | 4 cut(s) | 192, 437, 1950, 2403 |
| MboI | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| MfeI | CAATTG | 2 cut(s) | 1455, 1620 |
| MflI | RGATCY | 1 cut(s) | 435 |
| MlyI | GAGTC | 5 cut(s) | 473, 623, 668, 1390, 1555 |
| MmeI | TCCRAC | 6 cut(s) | 262, 928, 1201, 1522, 1827, 1837 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1131 |
| MspA1I | CMGCKG | 2 cut(s) | 818, 1283 |
| MspI | CCGG | 2 cut(s) | 440, 2556 |
| MspR9I | CCNGG | 5 cut(s) | 440, 714, 2238, 2557, 2568 |
| MunI | CAATTG | 2 cut(s) | 1455, 1620 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvaI | CCWGG | 3 cut(s) | 714, 2238, 2568 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 344, 718, 1352, 1517, 1682, 2000, 2335 |
| NciI | CCSGG | 2 cut(s) | 440, 2557 |
| NdeI | CATATG | 1 cut(s) | 562 |
| NdeII | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| NheI | GCTAGC | 1 cut(s) | 1990 |
| NlaIII | CATG | 2 cut(s) | 197, 941 |
| NlaIV | GGNNCC | 1 cut(s) | 1521 |
| NmuCI | GTSAC | 2 cut(s) | 389, 2290 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1131 |
| PfoI | TCCNGGA | 1 cut(s) | 438 |
| PkrI | GCNGC | 5 cut(s) | 346, 817, 1201, 1687, 2197 |
| PleI | GAGTC | 5 cut(s) | 472, 622, 667, 1390, 1555 |
| PpsI | GAGTC | 5 cut(s) | 472, 622, 667, 1390, 1555 |
| Psp6I | CCWGG | 3 cut(s) | 712, 2236, 2566 |
| PspGI | CCWGG | 3 cut(s) | 712, 2236, 2566 |
| PspN4I | GGNNCC | 1 cut(s) | 1521 |
| PspPI | GGNCC | 2 cut(s) | 809, 1144 |
| PstI | CTGCAG | 2 cut(s) | 817, 1678 |
| PsuI | RGATCY | 1 cut(s) | 435 |
| PvuII | CAGCTG | 2 cut(s) | 818, 1283 |
| RsaI | GTAC | 1 cut(s) | 2242 |
| RsaNI | GTAC | 1 cut(s) | 2241 |
| SatI | GCNGC | 5 cut(s) | 345, 816, 1200, 1686, 2196 |
| Sau3AI | GATC | 4 cut(s) | 190, 435, 1948, 2401 |
| Sau96I | GGNCC | 2 cut(s) | 809, 1144 |
| SchI | GAGTC | 5 cut(s) | 473, 623, 668, 1390, 1555 |
| ScrFI | CCNGG | 5 cut(s) | 440, 714, 2238, 2557, 2568 |
| SexAI | ACCWGGT | 1 cut(s) | 2236 |
| SfaNI | GCATC | 9 cut(s) | 29, 229, 331, 415, 491, 535, 1364, 1483, 1990 |
| SfcI | CTRYAG | 5 cut(s) | 213, 468, 498, 813, 1674 |
| SinI | GGWCC | 1 cut(s) | 1144 |
| SmlI | CTYRAG | 2 cut(s) | 735, 755 |
| SmoI | CTYRAG | 2 cut(s) | 735, 755 |
| SsiI | CCGC | 4 cut(s) | 1838, 1946, 2195, 2421 |
| SspI | AATATT | 2 cut(s) | 976, 1277 |
| StyD4I | CCNGG | 5 cut(s) | 438, 712, 2236, 2555, 2566 |
| StyI | CCWWGG | 1 cut(s) | 2595 |
| TaaI | ACNGT | 5 cut(s) | 16, 628, 1132, 1540, 2245 |
| TaiI | ACGT | 2 cut(s) | 1722, 2133 |
| TaqI | TCGA | 3 cut(s) | 189, 1698, 2573 |
| TauI | GCSGC | 1 cut(s) | 2198 |
| TscAI | CASTG | 4 cut(s) | 597, 624, 1209, 1695 |
| TseFI | GTSAC | 2 cut(s) | 389, 2290 |
| TseI | GCWGC | 4 cut(s) | 344, 815, 1199, 1685 |
| Tsp45I | GTSAC | 2 cut(s) | 389, 2290 |
| TspRI | CASTG | 4 cut(s) | 597, 624, 1209, 1695 |
| VpaK11BI | GGWCC | 1 cut(s) | 1144 |
| XapI | RAATTY | 2 cut(s) | 1761, 2012 |
| XbaI | TCTAGA | 3 cut(s) | 160, 307, 883 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1131 |