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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g08611 |
| malus_domestica | MD04G1185000.v1.1 MD12G1198800.v1.1 |
| prunus_persica | Prupe.6G303400_v2.0.a1 |
| pyrus_communis | pycom12g18520 |
| rosa_chinensis | RchiOBHm_Chr3g0458711 |
| rosa_laevigata | RLG00000025140 |
| rosa_multiflora | Rmu_sc0001634.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00420850 |
| rosa_rugosa | Rorug03G0031400 |
| rosa_samantha | Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800 |
| rosa_wichuraiana | Rw3G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2041, 2304 |
| AccBSI | CCGCTC | 1 cut(s) | 448 |
| AccI | GTMKAC | 1 cut(s) | 1557 |
| AccII | CGCG | 1 cut(s) | 215 |
| AciI | CCGC | 9 cut(s) | 213, 227, 446, 467, 1457, 1733, 1782, 2036, 2111 |
| AclWI | GGATC | 6 cut(s) | 529, 708, 721, 1036, 1649, 1662 |
| AcoI | YGGCCR | 1 cut(s) | 375 |
| AcsI | RAATTY | 5 cut(s) | 30, 1051, 1582, 1919, 1988 |
| AcuI | CTGAAG | 4 cut(s) | 828, 1017, 1641, 2067 |
| AfaI | GTAC | 3 cut(s) | 427, 1947, 2137 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 325, 544, 2302, 2429 |
| Alw26I | GTCTC | 3 cut(s) | 821, 1256, 1442 |
| AlwI | GGATC | 6 cut(s) | 529, 708, 721, 1036, 1649, 1662 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2195 |
| AoxI | GGCC | 1 cut(s) | 375 |
| ApeKI | GCWGC | 5 cut(s) | 5, 200, 1409, 2015, 2051 |
| ApoI | RAATTY | 5 cut(s) | 30, 1051, 1582, 1919, 1988 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 261, 480 |
| AspLEI | GCGC | 2 cut(s) | 133, 217 |
| AspS9I | GGNCC | 1 cut(s) | 2293 |
| AsuC2I | CCSGG | 1 cut(s) | 539 |
| AsuHPI | GGTGA | 3 cut(s) | 1547, 2282, 2383 |
| AsuNHI | GCTAGC | 2 cut(s) | 1240, 1720 |
| AvaII | GGWCC | 1 cut(s) | 2293 |
| AxyI | CCTNAGG | 1 cut(s) | 2289 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 417, 450 |
| BalI | TGGCCA | 1 cut(s) | 377 |
| BamHI | GGATCC | 2 cut(s) | 713, 1654 |
| BanII | GRGCYC | 1 cut(s) | 320 |
| BbsI | GAAGAC | 2 cut(s) | 1359, 1932 |
| BbvCI | CCTCAGC | 1 cut(s) | 1650 |
| BbvI | GCAGC | 4 cut(s) | 187, 1421, 2002, 2063 |
| BccI | CCATC | 7 cut(s) | 89, 175, 601, 1454, 1759, 2086, 2261 |
| BceAI | ACGGC | 1 cut(s) | 245 |
| BclI | TGATCA | 1 cut(s) | 2272 |
| BcnI | CCSGG | 1 cut(s) | 539 |
| BcoDI | GTCTC | 3 cut(s) | 821, 1256, 1442 |
| BfmI | CTRYAG | 4 cut(s) | 348, 567, 1452, 1890 |
| BfuAI | ACCTGC | 2 cut(s) | 2041, 2304 |
| BisI | GCNGC | 5 cut(s) | 6, 201, 1410, 2016, 2052 |
| BlpI | GCTNAGC | 1 cut(s) | 864 |
| BlsI | GCNGC | 5 cut(s) | 7, 202, 1411, 2017, 2053 |
| Bme1390I | CCNGG | 1 cut(s) | 539 |
| Bme18I | GGWCC | 1 cut(s) | 2293 |
| BmgT120I | GGNCC | 1 cut(s) | 2293 |
| BmiI | GGNNCC | 4 cut(s) | 630, 687, 715, 1656 |
| BmrFI | CCNGG | 1 cut(s) | 539 |
| BmsI | GCATC | 6 cut(s) | 196, 295, 634, 1147, 2014, 2182 |
| BmtI | GCTAGC | 2 cut(s) | 1244, 1724 |
| BpiI | GAAGAC | 2 cut(s) | 1359, 1932 |
| Bpu10I | CCTNAGC | 2 cut(s) | 792, 1650 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 864 |
| BpuEI | CTTGAG | 1 cut(s) | 1136 |
| BpuMI | CCSGG | 1 cut(s) | 539 |
| Bsa29I | ATCGAT | 1 cut(s) | 1839 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2271 |
| BsaJI | CCNNGG | 1 cut(s) | 2262 |
| BsaWI | WCCGGW | 1 cut(s) | 754 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 325, 544, 2302, 2429 |
| Bse1I | ACTGG | 3 cut(s) | 725, 1425, 2373 |
| Bse21I | CCTNAGG | 1 cut(s) | 2289 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2271 |
| BseCI | ATCGAT | 1 cut(s) | 1839 |
| BseDI | CCNNGG | 1 cut(s) | 2262 |
| BseGI | GGATG | 9 cut(s) | 167, 593, 829, 1162, 1465, 1570, 1615, 1963, 2272 |
| BseJI | GATNNNNATC | 1 cut(s) | 2271 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 325, 544, 2302, 2429 |
| BseNI | ACTGG | 3 cut(s) | 725, 1425, 2373 |
| BseRI | GAGGAG | 7 cut(s) | 639, 698, 1133, 1688, 1742, 2129, 2244 |
| BseXI | GCAGC | 4 cut(s) | 187, 1421, 2002, 2063 |
| BsgI | GTGCAG | 2 cut(s) | 839, 1239 |
| Bsh1236I | CGCG | 1 cut(s) | 215 |
| BshFI | GGCC | 1 cut(s) | 377 |
| BshVI | ATCGAT | 1 cut(s) | 1839 |
| BsiSI | CCGG | 3 cut(s) | 179, 539, 755 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 325, 544, 2302, 2429 |
| BsmAI | GTCTC | 3 cut(s) | 821, 1256, 1442 |
| BsnI | GGCC | 1 cut(s) | 377 |
| Bsp1286I | GDGCHC | 1 cut(s) | 320 |
| Bsp143I | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 864 |
| BspACI | CCGC | 9 cut(s) | 213, 227, 446, 467, 1457, 1733, 1782, 2036, 2111 |
| BspANI | GGCC | 1 cut(s) | 377 |
| BspDI | ATCGAT | 1 cut(s) | 1839 |
| BspFNI | CGCG | 1 cut(s) | 215 |
| BspLI | GGNNCC | 4 cut(s) | 630, 687, 715, 1656 |
| BspMAI | CTGCAG | 1 cut(s) | 1894 |
| BspMI | ACCTGC | 2 cut(s) | 2041, 2304 |
| BspOI | GCTAGC | 2 cut(s) | 1244, 1724 |
| BspPI | GGATC | 6 cut(s) | 529, 708, 721, 1036, 1649, 1662 |
| BspQI | GCTCTTC | 2 cut(s) | 1242, 1304 |
| BsrBI | CCGCTC | 1 cut(s) | 448 |
| BsrI | ACTGG | 3 cut(s) | 725, 1425, 2373 |
| BssECI | CCNNGG | 1 cut(s) | 2262 |
| BssMI | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| BssT1I | CCWWGG | 1 cut(s) | 2262 |
| Bst4CI | ACNGT | 7 cut(s) | 16, 832, 1060, 1453, 1945, 2182, 2334 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2024 |
| BstC8I | GCNNGC | 4 cut(s) | 1242, 1254, 1722, 1890 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2300 |
| BstF5I | GGATG | 9 cut(s) | 167, 593, 829, 1162, 1465, 1570, 1615, 1963, 2272 |
| BstFNI | CGCG | 1 cut(s) | 215 |
| BstHHI | GCGC | 2 cut(s) | 133, 217 |
| BstKTI | GATC | 6 cut(s) | 66, 537, 716, 1031, 1657, 2275 |
| BstMAI | GTCTC | 3 cut(s) | 821, 1256, 1442 |
| BstMBI | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| BstNSI | RCATGY | 1 cut(s) | 299 |
| BstSCI | CCNGG | 1 cut(s) | 537 |
| BstSFI | CTRYAG | 4 cut(s) | 348, 567, 1452, 1890 |
| BstUI | CGCG | 1 cut(s) | 215 |
| BstV1I | GCAGC | 4 cut(s) | 187, 1421, 2002, 2063 |
| BstV2I | GAAGAC | 2 cut(s) | 1359, 1932 |
| BstX2I | RGATCY | 4 cut(s) | 534, 713, 1028, 1654 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 373, 880, 955 |
| BstYI | RGATCY | 4 cut(s) | 534, 713, 1028, 1654 |
| Bsu15I | ATCGAT | 1 cut(s) | 1839 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2289 |
| BsuRI | GGCC | 1 cut(s) | 377 |
| BsuTUI | ATCGAT | 1 cut(s) | 1839 |
| BtsCI | GGATG | 9 cut(s) | 167, 593, 829, 1162, 1465, 1570, 1615, 1963, 2272 |
| BtsI | GCAGTG | 1 cut(s) | 1875 |
| BtsIMutI | CAGTG | 4 cut(s) | 39, 837, 1875, 2366 |
| BveI | ACCTGC | 2 cut(s) | 2041, 2304 |
| Cac8I | GCNNGC | 4 cut(s) | 1242, 1254, 1722, 1890 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2195 |
| CfoI | GCGC | 2 cut(s) | 133, 217 |
| Cfr13I | GGNCC | 1 cut(s) | 2293 |
| ClaI | ATCGAT | 1 cut(s) | 1839 |
| CseI | GACGC | 1 cut(s) | 917 |
| Csp6I | GTAC | 3 cut(s) | 426, 1946, 2136 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 279, 314, 498, 533, 1044, 1079, 1824, 1859 |
| CviAII | CATG | 2 cut(s) | 296, 974 |
| CviQI | GTAC | 3 cut(s) | 426, 1946, 2136 |
| DpnI | GATC | 6 cut(s) | 65, 536, 715, 1030, 1656, 2274 |
| DpnII | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| EaeI | YGGCCR | 1 cut(s) | 375 |
| EciI | GGCGGA | 2 cut(s) | 482, 1797 |
| Eco130I | CCWWGG | 1 cut(s) | 2262 |
| Eco24I | GRGCYC | 1 cut(s) | 320 |
| Eco32I | GATATC | 2 cut(s) | 286, 2446 |
| Eco47I | GGWCC | 1 cut(s) | 2293 |
| Eco57I | CTGAAG | 4 cut(s) | 828, 1017, 1641, 2067 |
| Eco81I | CCTNAGG | 1 cut(s) | 2289 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2300 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2293 |
| EcoRV | GATATC | 2 cut(s) | 286, 2446 |
| EcoT14I | CCWWGG | 1 cut(s) | 2262 |
| EcoT38I | GRGCYC | 1 cut(s) | 320 |
| ErhI | CCWWGG | 1 cut(s) | 2262 |
| FaeI | CATG | 2 cut(s) | 299, 977 |
| FaiI | YATR | 7 cut(s) | 297, 719, 975, 1319, 1505, 1994, 2393 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 972, 1004 |
| FatI | CATG | 2 cut(s) | 295, 973 |
| FauI | CCCGC | 1 cut(s) | 220 |
| FbaI | TGATCA | 1 cut(s) | 2272 |
| FblI | GTMKAC | 1 cut(s) | 1557 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 201, 1410, 2016, 2052 |
| FokI | GGATG | 9 cut(s) | 154, 580, 836, 1169, 1472, 1577, 1622, 1970, 2279 |
| FriOI | GRGCYC | 1 cut(s) | 320 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 201, 1410, 2016, 2052 |
| GlaI | GCGC | 2 cut(s) | 132, 216 |
| GluI | GCNGC | 5 cut(s) | 6, 201, 1410, 2016, 2052 |
| HaeIII | GGCC | 1 cut(s) | 377 |
| HapII | CCGG | 3 cut(s) | 179, 539, 755 |
| HgaI | GACGC | 1 cut(s) | 917 |
| HhaI | GCGC | 2 cut(s) | 133, 217 |
| Hin1II | CATG | 2 cut(s) | 299, 977 |
| Hin6I | GCGC | 2 cut(s) | 131, 215 |
| HinP1I | GCGC | 2 cut(s) | 131, 215 |
| HpaII | CCGG | 3 cut(s) | 179, 539, 755 |
| HphI | GGTGA | 3 cut(s) | 1547, 2282, 2383 |
| Hpy166II | GTNNAC | 1 cut(s) | 1558 |
| Hpy188III | TCNNGA | 5 cut(s) | 266, 485, 1115, 1136, 1963 |
| Hpy8I | GTNNAC | 1 cut(s) | 1558 |
| HpyCH4III | ACNGT | 7 cut(s) | 16, 832, 1060, 1453, 1945, 2182, 2334 |
| HpyCH4V | TGCA | 5 cut(s) | 338, 820, 1220, 1892, 2018 |
| Hsp92II | CATG | 2 cut(s) | 299, 977 |
| HspAI | GCGC | 2 cut(s) | 131, 215 |
| Ksp22I | TGATCA | 1 cut(s) | 2272 |
| Kzo9I | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| LguI | GCTCTTC | 2 cut(s) | 1242, 1304 |
| LmnI | GCTCC | 5 cut(s) | 214, 406, 652, 685, 2012 |
| Lsp1109I | GCAGC | 4 cut(s) | 187, 1421, 2002, 2063 |
| LweI | GCATC | 6 cut(s) | 196, 295, 634, 1147, 2014, 2182 |
| MaeIII | GTNAC | 3 cut(s) | 697, 1174, 1477 |
| MalI | GATC | 6 cut(s) | 65, 536, 715, 1030, 1656, 2274 |
| MbiI | CCGCTC | 1 cut(s) | 448 |
| MboI | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| MfeI | CAATTG | 2 cut(s) | 339, 1668 |
| MflI | RGATCY | 4 cut(s) | 534, 713, 1028, 1654 |
| MhlI | GDGCHC | 1 cut(s) | 320 |
| MlsI | TGGCCA | 1 cut(s) | 377 |
| MluNI | TGGCCA | 1 cut(s) | 377 |
| MlyI | GAGTC | 5 cut(s) | 353, 572, 740, 885, 2068 |
| MmeI | TCCRAC | 2 cut(s) | 1411, 1557 |
| Mox20I | TGGCCA | 1 cut(s) | 377 |
| MroXI | GAANNNNTTC | 2 cut(s) | 261, 480 |
| MscI | TGGCCA | 1 cut(s) | 377 |
| MseI | TTAA | 8 cut(s) | 107, 741, 1008, 1347, 1526, 2184, 2214, 2454 |
| MslI | CAYNNNNRTG | 1 cut(s) | 392 |
| Msp20I | TGGCCA | 1 cut(s) | 377 |
| MspA1I | CMGCKG | 3 cut(s) | 1256, 1412, 2141 |
| MspI | CCGG | 3 cut(s) | 179, 539, 755 |
| MspR9I | CCNGG | 1 cut(s) | 539 |
| MunI | CAATTG | 2 cut(s) | 339, 1668 |
| MvnI | CGCG | 1 cut(s) | 215 |
| NciI | CCSGG | 1 cut(s) | 539 |
| NdeII | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| NheI | GCTAGC | 2 cut(s) | 1240, 1720 |
| NlaIII | CATG | 2 cut(s) | 299, 977 |
| NlaIV | GGNNCC | 4 cut(s) | 630, 687, 715, 1656 |
| NmuCI | GTSAC | 2 cut(s) | 697, 1174 |
| NspI | RCATGY | 1 cut(s) | 299 |
| PciSI | GCTCTTC | 2 cut(s) | 1242, 1304 |
| PdmI | GAANNNNTTC | 2 cut(s) | 261, 480 |
| PfeI | GAWTC | 9 cut(s) | 269, 476, 488, 1321, 1331, 1367, 1487, 1823, 2156 |
| PkrI | GCNGC | 5 cut(s) | 7, 202, 1411, 2017, 2053 |
| PleI | GAGTC | 5 cut(s) | 352, 571, 740, 884, 2068 |
| PpsI | GAGTC | 5 cut(s) | 352, 571, 740, 884, 2068 |
| PpuMI | RGGWCCY | 1 cut(s) | 2293 |
| Psp5II | RGGWCCY | 1 cut(s) | 2293 |
| PspN4I | GGNNCC | 4 cut(s) | 630, 687, 715, 1656 |
| PspPI | GGNCC | 1 cut(s) | 2293 |
| PspPPI | RGGWCCY | 1 cut(s) | 2293 |
| PstI | CTGCAG | 1 cut(s) | 1894 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2195 |
| PsuI | RGATCY | 4 cut(s) | 534, 713, 1028, 1654 |
| PvuII | CAGCTG | 3 cut(s) | 1256, 1412, 2141 |
| RsaI | GTAC | 3 cut(s) | 427, 1947, 2137 |
| RsaNI | GTAC | 3 cut(s) | 426, 1946, 2136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 392 |
| SapI | GCTCTTC | 2 cut(s) | 1242, 1304 |
| SaqAI | TTAA | 8 cut(s) | 107, 741, 1008, 1347, 1526, 2184, 2214, 2454 |
| SatI | GCNGC | 5 cut(s) | 6, 201, 1410, 2016, 2052 |
| Sau3AI | GATC | 6 cut(s) | 63, 534, 713, 1028, 1654, 2272 |
| Sau96I | GGNCC | 1 cut(s) | 2293 |
| SchI | GAGTC | 5 cut(s) | 353, 572, 740, 885, 2068 |
| ScrFI | CCNGG | 1 cut(s) | 539 |
| SduI | GDGCHC | 1 cut(s) | 320 |
| SfaNI | GCATC | 6 cut(s) | 196, 295, 634, 1147, 2014, 2182 |
| SfcI | CTRYAG | 4 cut(s) | 348, 567, 1452, 1890 |
| SinI | GGWCC | 1 cut(s) | 2293 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 392 |
| SmlI | CTYRAG | 1 cut(s) | 1115 |
| SmoI | CTYRAG | 1 cut(s) | 1115 |
| SsiI | CCGC | 9 cut(s) | 213, 227, 446, 467, 1457, 1733, 1782, 2036, 2111 |
| SspI | AATATT | 1 cut(s) | 505 |
| StyD4I | CCNGG | 1 cut(s) | 537 |
| StyI | CCWWGG | 1 cut(s) | 2262 |
| TaaI | ACNGT | 7 cut(s) | 16, 832, 1060, 1453, 1945, 2182, 2334 |
| TaqI | TCGA | 8 cut(s) | 87, 282, 848, 1102, 1135, 1839, 2336, 2414 |
| TatI | WGTACW | 2 cut(s) | 1945, 2135 |
| TfiI | GAWTC | 9 cut(s) | 269, 476, 488, 1321, 1331, 1367, 1487, 1823, 2156 |
| Tru1I | TTAA | 8 cut(s) | 107, 741, 1008, 1347, 1526, 2184, 2214, 2454 |
| Tru9I | TTAA | 8 cut(s) | 107, 741, 1008, 1347, 1526, 2184, 2214, 2454 |
| TscAI | CASTG | 4 cut(s) | 46, 837, 1875, 2373 |
| TseFI | GTSAC | 2 cut(s) | 697, 1174 |
| TseI | GCWGC | 5 cut(s) | 5, 200, 1409, 2015, 2051 |
| Tsp45I | GTSAC | 2 cut(s) | 697, 1174 |
| TspDTI | ATGAA | 9 cut(s) | 270, 489, 855, 993, 1098, 1644, 1824, 1917, 2169 |
| TspRI | CASTG | 4 cut(s) | 46, 837, 1875, 2373 |
| VpaK11BI | GGWCC | 1 cut(s) | 2293 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2300 |
| XapI | RAATTY | 5 cut(s) | 30, 1051, 1582, 1919, 1988 |
| XceI | RCATGY | 1 cut(s) | 299 |
| XmiI | GTMKAC | 1 cut(s) | 1557 |
| XmnI | GAANNNNTTC | 2 cut(s) | 261, 480 |