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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g08611 |
| malus_domestica | MD04G1185000.v1.1 MD12G1198800.v1.1 |
| prunus_persica | Prupe.6G303400_v2.0.a1 |
| pyrus_communis | pycom12g18520 |
| rosa_chinensis | RchiOBHm_Chr3g0458711 |
| rosa_laevigata | RLG00000025140 |
| rosa_multiflora | Rmu_sc0001634.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00420850 |
| rosa_rugosa | Rorug03G0031400 |
| rosa_samantha | Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800 |
| rosa_wichuraiana | Rw3G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1442, 1562, 1682 |
| Acc36I | ACCTGC | 1 cut(s) | 2430 |
| AciI | CCGC | 2 cut(s) | 1118, 2073 |
| AclWI | GGATC | 1 cut(s) | 853 |
| AcsI | RAATTY | 2 cut(s) | 590, 770 |
| AcuI | CTGAAG | 8 cut(s) | 201, 648, 1020, 1176, 1299, 1437, 2097, 2151 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 413, 1192, 2428 |
| AflIII | ACRYGT | 1 cut(s) | 1786 |
| AjnI | CCWGG | 2 cut(s) | 879, 2415 |
| Alw21I | GWGCWC | 3 cut(s) | 244, 353, 636 |
| Alw26I | GTCTC | 4 cut(s) | 1085, 1115, 1268, 2156 |
| AlwI | GGATC | 1 cut(s) | 853 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2422, 2494 |
| AoxI | GGCC | 2 cut(s) | 430, 665 |
| ApeKI | GCWGC | 7 cut(s) | 17, 152, 341, 1082, 1529, 1649, 1769 |
| ApoI | RAATTY | 2 cut(s) | 590, 770 |
| AseI | ATTAAT | 1 cut(s) | 2019 |
| AspS9I | GGNCC | 3 cut(s) | 665, 1027, 2419 |
| AsuHPI | GGTGA | 6 cut(s) | 79, 664, 1378, 1996, 2408, 2509 |
| AsuII | TTCGAA | 1 cut(s) | 1374 |
| AsuNHI | GCTAGC | 6 cut(s) | 1069, 1225, 1516, 1636, 1756, 1924 |
| AvaII | GGWCC | 2 cut(s) | 1027, 2419 |
| BanII | GRGCYC | 3 cut(s) | 353, 636, 873 |
| BauI | CACGAG | 1 cut(s) | 635 |
| BbsI | GAAGAC | 2 cut(s) | 236, 1188 |
| Bbv12I | GWGCWC | 3 cut(s) | 244, 353, 636 |
| BbvI | GCAGC | 7 cut(s) | 4, 164, 328, 1094, 1541, 1661, 1781 |
| BccI | CCATC | 4 cut(s) | 415, 818, 1811, 2387 |
| BciT130I | CCWGG | 2 cut(s) | 881, 2417 |
| BclI | TGATCA | 2 cut(s) | 190, 2398 |
| BcoDI | GTCTC | 4 cut(s) | 1085, 1115, 1268, 2156 |
| BfmI | CTRYAG | 5 cut(s) | 6, 213, 381, 669, 2124 |
| BfuAI | ACCTGC | 1 cut(s) | 2430 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1235 |
| BisI | GCNGC | 7 cut(s) | 18, 153, 342, 1083, 1530, 1650, 1770 |
| BlpI | GCTNAGC | 1 cut(s) | 2442 |
| BlsI | GCNGC | 7 cut(s) | 19, 154, 343, 1084, 1531, 1651, 1771 |
| Bme1390I | CCNGG | 2 cut(s) | 881, 2417 |
| Bme18I | GGWCC | 2 cut(s) | 1027, 2419 |
| BmgT120I | GGNCC | 3 cut(s) | 665, 1027, 2419 |
| BmiI | GGNNCC | 3 cut(s) | 624, 870, 2557 |
| BmrFI | CCNGG | 2 cut(s) | 881, 2417 |
| BmsI | GCATC | 5 cut(s) | 29, 139, 328, 448, 2308 |
| BmtI | GCTAGC | 6 cut(s) | 1073, 1229, 1520, 1640, 1760, 1928 |
| BpiI | GAAGAC | 2 cut(s) | 236, 1188 |
| BpmI | CTGGAG | 1 cut(s) | 1980 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2442 |
| Bpu14I | TTCGAA | 1 cut(s) | 1374 |
| BpuEI | CTTGAG | 1 cut(s) | 582 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2397 |
| BsaJI | CCNNGG | 4 cut(s) | 115, 2388, 2415, 2559 |
| BsaWI | WCCGGW | 1 cut(s) | 259 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1380, 1410 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 413, 1192, 2428 |
| Bse118I | RCCGGY | 1 cut(s) | 2321 |
| Bse1I | ACTGG | 3 cut(s) | 1129, 1251, 2499 |
| Bse3DI | GCAATG | 1 cut(s) | 294 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2397 |
| BseBI | CCWGG | 2 cut(s) | 881, 2417 |
| BseDI | CCNNGG | 4 cut(s) | 115, 2388, 2415, 2559 |
| BseGI | GGATG | 8 cut(s) | 154, 649, 829, 1291, 1312, 2314, 2398, 2569 |
| BseJI | GATNNNNATC | 1 cut(s) | 2397 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 413, 1192, 2428 |
| BseMI | GCAATG | 1 cut(s) | 294 |
| BseNI | ACTGG | 3 cut(s) | 1129, 1251, 2499 |
| BseRI | GAGGAG | 7 cut(s) | 453, 635, 1487, 1895, 2063, 2157, 2370 |
| BseXI | GCAGC | 7 cut(s) | 4, 164, 328, 1094, 1541, 1661, 1781 |
| BsgI | GTGCAG | 1 cut(s) | 659 |
| BshFI | GGCC | 2 cut(s) | 432, 667 |
| BsiHKAI | GWGCWC | 3 cut(s) | 244, 353, 636 |
| BsiSI | CCGG | 2 cut(s) | 260, 2322 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 413, 1192, 2428 |
| BsmAI | GTCTC | 4 cut(s) | 1085, 1115, 1268, 2156 |
| BsmI | GAATGC | 1 cut(s) | 1120 |
| BsnI | GGCC | 2 cut(s) | 432, 667 |
| Bsp119I | TTCGAA | 1 cut(s) | 1374 |
| Bsp1286I | GDGCHC | 4 cut(s) | 244, 353, 636, 873 |
| Bsp143I | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2442 |
| BspACI | CCGC | 2 cut(s) | 1118, 2073 |
| BspANI | GGCC | 2 cut(s) | 432, 667 |
| BspLI | GGNNCC | 3 cut(s) | 624, 870, 2557 |
| BspMAI | CTGCAG | 1 cut(s) | 2128 |
| BspMI | ACCTGC | 1 cut(s) | 2430 |
| BspOI | GCTAGC | 6 cut(s) | 1073, 1229, 1520, 1640, 1760, 1928 |
| BspPI | GGATC | 1 cut(s) | 853 |
| BspQI | GCTCTTC | 1 cut(s) | 624 |
| BspT104I | TTCGAA | 1 cut(s) | 1374 |
| BsrDI | GCAATG | 1 cut(s) | 294 |
| BsrFI | RCCGGY | 1 cut(s) | 2321 |
| BsrI | ACTGG | 3 cut(s) | 1129, 1251, 2499 |
| BssAI | RCCGGY | 1 cut(s) | 2321 |
| BssECI | CCNNGG | 4 cut(s) | 115, 2388, 2415, 2559 |
| BssMI | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| BssSI | CACGAG | 1 cut(s) | 635 |
| BssT1I | CCWWGG | 3 cut(s) | 115, 2388, 2559 |
| Bst2BI | CACGAG | 1 cut(s) | 635 |
| Bst2UI | CCWGG | 2 cut(s) | 881, 2417 |
| Bst4CI | ACNGT | 5 cut(s) | 514, 652, 724, 1255, 2460 |
| BstBI | TTCGAA | 1 cut(s) | 1374 |
| BstC8I | GCNNGC | 8 cut(s) | 549, 1071, 1227, 1518, 1638, 1758, 1926, 2124 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2426 |
| BstF5I | GGATG | 8 cut(s) | 154, 649, 829, 1291, 1312, 2314, 2398, 2569 |
| BstKTI | GATC | 4 cut(s) | 193, 848, 1017, 2401 |
| BstMAI | GTCTC | 4 cut(s) | 1085, 1115, 1268, 2156 |
| BstMBI | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| BstNI | CCWGG | 2 cut(s) | 881, 2417 |
| BstNSI | RCATGY | 2 cut(s) | 372, 1790 |
| BstSCI | CCNGG | 2 cut(s) | 879, 2415 |
| BstSFI | CTRYAG | 5 cut(s) | 6, 213, 381, 669, 2124 |
| BstV1I | GCAGC | 7 cut(s) | 4, 164, 328, 1094, 1541, 1661, 1781 |
| BstV2I | GAAGAC | 2 cut(s) | 236, 1188 |
| BstX2I | RGATCY | 1 cut(s) | 845 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 122, 880, 2552 |
| BstYI | RGATCY | 1 cut(s) | 845 |
| BsuRI | GGCC | 2 cut(s) | 432, 667 |
| BtsCI | GGATG | 8 cut(s) | 154, 649, 829, 1291, 1312, 2314, 2398, 2569 |
| BtsI | GCAGTG | 7 cut(s) | 750, 1245, 1539, 1659, 1779, 1944, 2133 |
| BtsIMutI | CAGTG | 9 cut(s) | 39, 750, 1245, 1539, 1659, 1779, 1944, 2133, 2492 |
| BveI | ACCTGC | 1 cut(s) | 2430 |
| Cac8I | GCNNGC | 8 cut(s) | 549, 1071, 1227, 1518, 1638, 1758, 1926, 2124 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2422, 2494 |
| Cfr10I | RCCGGY | 1 cut(s) | 2321 |
| Cfr13I | GGNCC | 3 cut(s) | 665, 1027, 2419 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 312, 347 |
| CviAII | CATG | 4 cut(s) | 29, 369, 1787, 2546 |
| DpnI | GATC | 4 cut(s) | 192, 847, 1016, 2400 |
| DpnII | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| Ecl136II | GAGCTC | 2 cut(s) | 351, 634 |
| Eco130I | CCWWGG | 3 cut(s) | 115, 2388, 2559 |
| Eco24I | GRGCYC | 3 cut(s) | 353, 636, 873 |
| Eco47I | GGWCC | 2 cut(s) | 1027, 2419 |
| Eco53kI | GAGCTC | 2 cut(s) | 351, 634 |
| Eco57I | CTGAAG | 8 cut(s) | 201, 648, 1020, 1176, 1299, 1437, 2097, 2151 |
| EcoICRI | GAGCTC | 2 cut(s) | 351, 634 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2426 |
| EcoO109I | RGGNCCY | 2 cut(s) | 665, 2419 |
| EcoRII | CCWGG | 2 cut(s) | 879, 2415 |
| EcoT14I | CCWWGG | 3 cut(s) | 115, 2388, 2559 |
| EcoT22I | ATGCAT | 1 cut(s) | 374 |
| EcoT38I | GRGCYC | 3 cut(s) | 353, 636, 873 |
| ErhI | CCWWGG | 3 cut(s) | 115, 2388, 2559 |
| FaeI | CATG | 4 cut(s) | 32, 372, 1790, 2549 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 91, 123 |
| FatI | CATG | 4 cut(s) | 28, 368, 1786, 2545 |
| FauI | CCCGC | 1 cut(s) | 2080 |
| FbaI | TGATCA | 2 cut(s) | 190, 2398 |
| Fnu4HI | GCNGC | 7 cut(s) | 18, 153, 342, 1083, 1530, 1650, 1770 |
| FokI | GGATG | 8 cut(s) | 161, 656, 836, 1298, 1319, 2321, 2405, 2576 |
| FriOI | GRGCYC | 3 cut(s) | 353, 636, 873 |
| Fsp4HI | GCNGC | 7 cut(s) | 18, 153, 342, 1083, 1530, 1650, 1770 |
| GluI | GCNGC | 7 cut(s) | 18, 153, 342, 1083, 1530, 1650, 1770 |
| GsuI | CTGGAG | 1 cut(s) | 1980 |
| HaeIII | GGCC | 2 cut(s) | 432, 667 |
| HapII | CCGG | 2 cut(s) | 260, 2322 |
| Hin1II | CATG | 4 cut(s) | 32, 372, 1790, 2549 |
| HincII | GTYRAC | 2 cut(s) | 1580, 1700 |
| HindII | GTYRAC | 2 cut(s) | 1580, 1700 |
| HpaII | CCGG | 2 cut(s) | 260, 2322 |
| HphI | GGTGA | 6 cut(s) | 79, 664, 1378, 1996, 2408, 2509 |
| Hpy166II | GTNNAC | 2 cut(s) | 1580, 1700 |
| Hpy188I | TCNGA | 7 cut(s) | 91, 181, 538, 589, 926, 2272, 2454 |
| Hpy188III | TCNNGA | 6 cut(s) | 932, 953, 1877, 1959, 2056, 2553 |
| Hpy8I | GTNNAC | 2 cut(s) | 1580, 1700 |
| HpyCH4III | ACNGT | 5 cut(s) | 514, 652, 724, 1255, 2460 |
| HpyCH4IV | ACGT | 1 cut(s) | 766 |
| HpyCH4V | TGCA | 8 cut(s) | 20, 152, 299, 372, 557, 640, 2126, 2354 |
| HpySE526I | ACGT | 1 cut(s) | 766 |
| Hsp92II | CATG | 4 cut(s) | 32, 372, 1790, 2549 |
| Ksp22I | TGATCA | 2 cut(s) | 190, 2398 |
| Kzo9I | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| LguI | GCTCTTC | 1 cut(s) | 624 |
| LmnI | GCTCC | 9 cut(s) | 247, 439, 466, 622, 703, 868, 1474, 1882, 2102 |
| Lsp1109I | GCAGC | 7 cut(s) | 4, 164, 328, 1094, 1541, 1661, 1781 |
| LweI | GCATC | 5 cut(s) | 29, 139, 328, 448, 2308 |
| MaeII | ACGT | 1 cut(s) | 766 |
| MaeIII | GTNAC | 3 cut(s) | 1003, 2221, 2490 |
| MalI | GATC | 4 cut(s) | 192, 847, 1016, 2400 |
| MboI | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| MfeI | CAATTG | 2 cut(s) | 1584, 1704 |
| MflI | RGATCY | 1 cut(s) | 845 |
| MhlI | GDGCHC | 4 cut(s) | 244, 353, 636, 873 |
| MlyI | GAGTC | 6 cut(s) | 185, 276, 371, 509, 527, 2276 |
| MmeI | TCCRAC | 5 cut(s) | 1084, 1237, 1521, 1641, 1761 |
| Mph1103I | ATGCAT | 1 cut(s) | 374 |
| MseI | TTAA | 9 cut(s) | 363, 528, 851, 1176, 1322, 1898, 2019, 2247, 2571 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2012 |
| MspA1I | CMGCKG | 2 cut(s) | 173, 2075 |
| MspI | CCGG | 2 cut(s) | 260, 2322 |
| MspR9I | CCNGG | 2 cut(s) | 881, 2417 |
| MunI | CAATTG | 2 cut(s) | 1584, 1704 |
| Mva1269I | GAATGC | 1 cut(s) | 1120 |
| MvaI | CCWGG | 2 cut(s) | 881, 2417 |
| NdeII | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| NheI | GCTAGC | 6 cut(s) | 1069, 1225, 1516, 1636, 1756, 1924 |
| NlaIII | CATG | 4 cut(s) | 32, 372, 1790, 2549 |
| NlaIV | GGNNCC | 3 cut(s) | 624, 870, 2557 |
| NmuCI | GTSAC | 2 cut(s) | 1003, 2490 |
| NsiI | ATGCAT | 1 cut(s) | 374 |
| NspI | RCATGY | 2 cut(s) | 372, 1790 |
| NspV | TTCGAA | 1 cut(s) | 1374 |
| PciI | ACATGT | 1 cut(s) | 1786 |
| PciSI | GCTCTTC | 1 cut(s) | 624 |
| PctI | GAATGC | 1 cut(s) | 1120 |
| PfoI | TCCNGGA | 1 cut(s) | 879 |
| PkrI | GCNGC | 7 cut(s) | 19, 154, 343, 1084, 1531, 1651, 1771 |
| PleI | GAGTC | 6 cut(s) | 184, 275, 371, 508, 527, 2275 |
| PpsI | GAGTC | 6 cut(s) | 184, 275, 371, 508, 527, 2275 |
| PpuMI | RGGWCCY | 1 cut(s) | 2419 |
| PscI | ACATGT | 1 cut(s) | 1786 |
| PshBI | ATTAAT | 1 cut(s) | 2019 |
| PsiI | TTATAA | 3 cut(s) | 1442, 1562, 1682 |
| Psp124BI | GAGCTC | 2 cut(s) | 353, 636 |
| Psp5II | RGGWCCY | 1 cut(s) | 2419 |
| Psp6I | CCWGG | 2 cut(s) | 879, 2415 |
| PspGI | CCWGG | 2 cut(s) | 879, 2415 |
| PspN4I | GGNNCC | 3 cut(s) | 624, 870, 2557 |
| PspPI | GGNCC | 3 cut(s) | 665, 1027, 2419 |
| PspPPI | RGGWCCY | 1 cut(s) | 2419 |
| PstI | CTGCAG | 1 cut(s) | 2128 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2422, 2494 |
| PsuI | RGATCY | 1 cut(s) | 845 |
| PvuII | CAGCTG | 1 cut(s) | 173 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2012 |
| SacI | GAGCTC | 2 cut(s) | 353, 636 |
| SapI | GCTCTTC | 1 cut(s) | 624 |
| SaqAI | TTAA | 9 cut(s) | 363, 528, 851, 1176, 1322, 1898, 2019, 2247, 2571 |
| SatI | GCNGC | 7 cut(s) | 18, 153, 342, 1083, 1530, 1650, 1770 |
| Sau3AI | GATC | 4 cut(s) | 190, 845, 1014, 2398 |
| Sau96I | GGNCC | 3 cut(s) | 665, 1027, 2419 |
| SchI | GAGTC | 6 cut(s) | 185, 276, 371, 509, 527, 2276 |
| ScrFI | CCNGG | 2 cut(s) | 881, 2417 |
| SduI | GDGCHC | 4 cut(s) | 244, 353, 636, 873 |
| SfaNI | GCATC | 5 cut(s) | 29, 139, 328, 448, 2308 |
| SfcI | CTRYAG | 5 cut(s) | 6, 213, 381, 669, 2124 |
| SfuI | TTCGAA | 1 cut(s) | 1374 |
| SinI | GGWCC | 2 cut(s) | 1027, 2419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2012 |
| SmlI | CTYRAG | 1 cut(s) | 597 |
| SmoI | CTYRAG | 1 cut(s) | 597 |
| SsiI | CCGC | 2 cut(s) | 1118, 2073 |
| SstI | GAGCTC | 2 cut(s) | 353, 636 |
| StyD4I | CCNGG | 2 cut(s) | 879, 2415 |
| StyI | CCWWGG | 3 cut(s) | 115, 2388, 2559 |
| TaaI | ACNGT | 5 cut(s) | 514, 652, 724, 1255, 2460 |
| TaiI | ACGT | 1 cut(s) | 769 |
| TaqI | TCGA | 6 cut(s) | 270, 726, 1374, 2055, 2340, 2477 |
| Tru1I | TTAA | 9 cut(s) | 363, 528, 851, 1176, 1322, 1898, 2019, 2247, 2571 |
| Tru9I | TTAA | 9 cut(s) | 363, 528, 851, 1176, 1322, 1898, 2019, 2247, 2571 |
| TscAI | CASTG | 9 cut(s) | 46, 750, 1245, 1539, 1659, 1779, 1944, 2133, 2499 |
| TseFI | GTSAC | 2 cut(s) | 1003, 2490 |
| TseI | GCWGC | 7 cut(s) | 17, 152, 341, 1082, 1529, 1649, 1769 |
| Tsp45I | GTSAC | 2 cut(s) | 1003, 2490 |
| TspRI | CASTG | 9 cut(s) | 46, 750, 1245, 1539, 1659, 1779, 1944, 2133, 2499 |
| VpaK11BI | GGWCC | 2 cut(s) | 1027, 2419 |
| VspI | ATTAAT | 1 cut(s) | 2019 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2426 |
| XapI | RAATTY | 2 cut(s) | 590, 770 |
| XceI | RCATGY | 2 cut(s) | 372, 1790 |
| Zsp2I | ATGCAT | 1 cut(s) | 374 |