Rorug03G0031400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016360
Physical Location & Seq
Forward (+)
2457319 .. 2459575
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0031400.1

Sequence Viewer

Length: 1047 bp
ATGGCTGAGGAGAAGGGAACACAGATTCCAAAAGTTAAACTTGGAACTCAAGGATTTGAGGTCTCAAAATTGGGGTTTGGATGCATGGGTCTCACTGGTGTCTACAACTCTCCTGTTTCTGATGAGGATGGAATCTCAATAATAATAGATGCCTTCAATAAAGGAATCACTTTCTTTGACACAGCTGATGTATATGGACCTCATACAAATGAAGTTCTTGTTGGGAAGGCATTGAAGCAATTGCCAAGAGAAAAAATTCAATTAGCCACAAAGTTTGGTATTGCTGGAATTATGCATCCTCCTAGTATTAAAATCACAGGTACTCCGGAATATGTCCGGTCTTGCTGTGAGGCAAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTACGGTGCCTATAGAGGAAACTATGGGTGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATAAAGTACATTGGCTTATCTGAAGCCAGTCCCGACACAATAAGAAGGGCACACGCAGTTCATCCCATAACCGCTCTACAAATGGAGTGGTCACTCTGGACTCGAGATATTGAGGAAGAGATTATTCCACTTTGCAGGGAGCTTGGCATTGGAATAGTTCCATATAGTCCTCTTGGTCGTGGGTTTTTCGGTGGCAAAGCAGTTGCTGAAAGTGTGCCTTCAAATAGTTTTGTGTCATCGCATCCTCGGTTTGTAGGAGAGAACTTGCAGAAGAACAAGACTATTTACAATCGACTGGAAAACCTTGCTGAAAAGCACCAATGCCTTACCGCTCAACTAGCATTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCAGGGACAACAAAGATAAAGAACCTGGATGCAAATATTGGCTCCTTGAAGGTGAAACTTGGGGAGGAAGACGTGAAAGAAGTTTCTGGTGCTGTACCACTAGACCAAGTCGCCGGTGGTAGAACTTTTGGAAACCTGATGCATTTGCAATGGAAATTCGCCAACACTCCTCCAAAAGAATCTAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

38.28

Weight (kDa)

6.17

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 314 1.1e-76 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08611
malus_domestica MD04G1185000.v1.1 MD12G1198800.v1.1
prunus_persica Prupe.6G303400_v2.0.a1
pyrus_communis pycom12g18520
rosa_chinensis RchiOBHm_Chr3g0458711
rosa_laevigata RLG00000025140
rosa_multiflora Rmu_sc0001634.1_g000013
rosa_roxburghii Rroxscaffold_6G00420850
rosa_rugosa Rorug03G0031400
rosa_samantha Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800
rosa_wichuraiana Rw3G007610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 2 cut(s) 545, 803
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 2 cut(s) 543, 801
AcsI RAATTY 2 cut(s) 255, 1010
AcuI CTGAAG 2 cut(s) 467, 513
AfaI GTAC 4 cut(s) 322, 479, 849, 951
AfiI CCNNNNNNNGG 1 cut(s) 857
AgsI TTSAA 6 cut(s) 157, 235, 260, 361, 693, 904
AjiI CACGTC 1 cut(s) 928
AjnI CCWGG 2 cut(s) 856, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 416
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 4 cut(s) 185, 357, 445, 613
AluI AGCT 4 cut(s) 185, 357, 445, 613
Alw26I GTCTC 2 cut(s) 67, 95
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 325
ApoI RAATTY 2 cut(s) 255, 1010
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 452, 919
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 930
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 858, 881
BcoDI GTCTC 2 cut(s) 67, 95
BfaI CTAG 3 cut(s) 303, 809, 956
BfmI CTRYAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 1041
Bme1390I CCNGG 2 cut(s) 858, 881
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 928
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 420, 898
BmrFI CCNGG 2 cut(s) 858, 881
BmsI GCATC 6 cut(s) 71, 139, 304, 721, 874, 984
BpiI GAAGAC 1 cut(s) 930
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 67, 95
BsaJI CCNNGG 4 cut(s) 716, 832, 856, 857
BsaWI WCCGGW 2 cut(s) 325, 336
BsaXI ACNNNNNCTCC 4 cut(s) 307, 337, 828, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 857
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 3 cut(s) 100, 498, 771
Bse3DI GCAATG 1 cut(s) 1010
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 2 cut(s) 858, 881
BseDI CCNNGG 4 cut(s) 716, 832, 856, 857
BseGI GGATG 6 cut(s) 86, 133, 295, 532, 712, 889
BseLI CCNNNNNNNGG 1 cut(s) 857
BseMI GCAATG 1 cut(s) 1010
BseNI ACTGG 3 cut(s) 100, 498, 771
BseRI GAGGAG 2 cut(s) 23, 1014
BseSI GKGCMC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 3 cut(s) 326, 337, 969
BslFI GGGAC 2 cut(s) 486, 874
BslI CCNNNNNNNGG 1 cut(s) 857
BsmAI GTCTC 2 cut(s) 67, 95
BsmFI GGGAC 2 cut(s) 486, 874
Bso31I GGTCTC 2 cut(s) 67, 95
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 523
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 385, 1041
BspACI CCGC 2 cut(s) 543, 801
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 420, 898
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 67, 95
BsrBI CCGCTC 2 cut(s) 545, 803
BsrDI GCAATG 1 cut(s) 1010
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 3 cut(s) 100, 498, 771
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 4 cut(s) 716, 832, 856, 857
BssMI GATC 2 cut(s) 385, 1041
BssT1I CCWWGG 1 cut(s) 832
Bst2UI CCWGG 2 cut(s) 858, 881
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 6, 1038
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 6 cut(s) 86, 133, 295, 532, 712, 889
BstKTI GATC 2 cut(s) 388, 1044
BstMAI GTCTC 2 cut(s) 67, 95
BstMBI GATC 2 cut(s) 385, 1041
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNI CCWGG 2 cut(s) 858, 881
BstSCI CCNGG 2 cut(s) 856, 879
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 1 cut(s) 1041
BstYI RGATCY 1 cut(s) 1041
BtgZI GCGATG 1 cut(s) 693
BtrI CACGTC 1 cut(s) 928
BtsCI GGATG 6 cut(s) 86, 133, 295, 532, 712, 889
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 353
Csp6I GTAC 4 cut(s) 321, 478, 848, 950
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 539, 574
CviAII CATG 2 cut(s) 85, 819
CviJI RGCY 9 cut(s) 5, 185, 266, 357, 445, 486, 497, 613, 897
CviKI_1 RGCY 9 cut(s) 5, 185, 266, 357, 445, 486, 497, 613, 897
CviQI GTAC 4 cut(s) 321, 478, 848, 950
DdeI CTNAG 2 cut(s) 6, 1038
DpnI GATC 2 cut(s) 387, 1043
DpnII GATC 2 cut(s) 385, 1041
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 832
Eco31I GGTCTC 2 cut(s) 67, 95
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 467, 513
Eco88I CYCGRG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRII CCWGG 2 cut(s) 856, 879
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 3 cut(s) 86, 297, 999
ErhI CCWWGG 1 cut(s) 832
FaeI CATG 2 cut(s) 88, 822
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 673, 705
FaqI GGGAC 2 cut(s) 486, 874
FatI CATG 2 cut(s) 84, 818
FblI GTMKAC 1 cut(s) 102
FokI GGATG 6 cut(s) 93, 140, 282, 519, 699, 896
FspBI CTAG 3 cut(s) 303, 809, 956
HapII CCGG 3 cut(s) 326, 337, 969
HgaI GACGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 88, 822
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 5 cut(s) 25, 132, 165, 571, 1034
HpaII CCGG 3 cut(s) 326, 337, 969
HphI GGTGA 2 cut(s) 452, 919
Hpy166II GTNNAC 3 cut(s) 103, 376, 409
Hpy188I TCNGA 3 cut(s) 121, 493, 1046
Hpy188III TCNNGA 5 cut(s) 326, 368, 503, 568, 575
Hpy8I GTNNAC 3 cut(s) 103, 376, 409
HpyAV CCTTC 7 cut(s) 7, 163, 220, 458, 510, 699, 898
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 7 cut(s) 84, 295, 606, 739, 887, 997, 1003
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 2 cut(s) 6, 1038
HpySE526I ACGT 1 cut(s) 927
Hsp92II CATG 2 cut(s) 88, 822
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 385, 1041
LmnI GCTCC 2 cut(s) 610, 902
LweI GCATC 6 cut(s) 71, 139, 304, 721, 874, 984
MaeI CTAG 3 cut(s) 303, 809, 956
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 1 cut(s) 561
MalI GATC 2 cut(s) 387, 1043
MbiI CCGCTC 2 cut(s) 545, 803
MboI GATC 2 cut(s) 385, 1041
MboII GAAGA 5 cut(s) 460, 473, 599, 754, 935
MfeI CAATTG 1 cut(s) 239
MflI RGATCY 1 cut(s) 1041
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 6 cut(s) 68, 239, 255, 260, 288, 1010
MlyI GAGTC 1 cut(s) 565
Mph1103I ATGCAT 3 cut(s) 86, 297, 999
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 36, 309
MslI CAYNNNNRTG 3 cut(s) 207, 416, 817
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 3 cut(s) 326, 337, 969
MspR9I CCNGG 2 cut(s) 858, 881
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 2 cut(s) 858, 881
MwoI GCNNNNNNNGC 1 cut(s) 809
NdeII GATC 2 cut(s) 385, 1041
NlaIII CATG 2 cut(s) 88, 822
NlaIV GGNNCC 2 cut(s) 420, 898
NmuCI GTSAC 1 cut(s) 561
NsiI ATGCAT 3 cut(s) 86, 297, 999
OliI CACNNNNGTG 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 573
PasI CCCWGGG 1 cut(s) 857
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 25, 132, 165, 1034
PflFI GACNNNGTC 1 cut(s) 962
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 2 cut(s) 856, 879
PspGI CCWGG 2 cut(s) 856, 879
PspN4I GGNNCC 2 cut(s) 420, 898
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 1041
PsyI GACNNNGTC 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 4 cut(s) 322, 479, 849, 951
RsaNI GTAC 4 cut(s) 321, 478, 848, 950
RseI CAYNNNNRTG 3 cut(s) 207, 416, 817
SaqAI TTAA 2 cut(s) 36, 309
Sau3AI GATC 2 cut(s) 385, 1041
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 2 cut(s) 858, 881
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 6 cut(s) 71, 139, 304, 721, 874, 984
SfcI CTRYAG 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 573
SgrAI CRCCGGYG 1 cut(s) 968
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 573
SmiMI CAYNNNNRTG 3 cut(s) 207, 416, 817
SmlI CTYRAG 2 cut(s) 48, 573
SmoI CTYRAG 2 cut(s) 48, 573
Sse9I AATT 6 cut(s) 68, 239, 255, 260, 288, 1010
SsiI CCGC 2 cut(s) 543, 801
SspI AATATT 1 cut(s) 892
SspMI CTAG 3 cut(s) 303, 809, 956
StyD4I CCNGG 2 cut(s) 856, 879
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 930
TaqI TCGA 2 cut(s) 574, 763
TasI AATT 6 cut(s) 68, 239, 255, 260, 288, 1010
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 4 cut(s) 25, 132, 165, 1034
Tru1I TTAA 2 cut(s) 36, 309
Tru9I TTAA 2 cut(s) 36, 309
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 561
Tsp45I GTSAC 1 cut(s) 561
TspDTI ATGAA 2 cut(s) 225, 521
TspRI CASTG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 855
XapI RAATTY 2 cut(s) 255, 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 303, 809, 956
Zsp2I ATGCAT 3 cut(s) 86, 297, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.