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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g08611 |
| malus_domestica | MD04G1185000.v1.1 MD12G1198800.v1.1 |
| prunus_persica | Prupe.6G303400_v2.0.a1 |
| pyrus_communis | pycom12g18520 |
| rosa_chinensis | RchiOBHm_Chr3g0458711 |
| rosa_laevigata | RLG00000025140 |
| rosa_multiflora | Rmu_sc0001634.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00420850 |
| rosa_rugosa | Rorug03G0031400 |
| rosa_samantha | Rh3AG089000 Rh3BG091800 Rh3CG092200 Rh3DG092800 |
| rosa_wichuraiana | Rw3G007610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2197, 2463 |
| AccB1I | GGYRCC | 1 cut(s) | 1516 |
| AciI | CCGC | 5 cut(s) | 1647, 1671, 1835, 1943, 2418 |
| AclWI | GGATC | 2 cut(s) | 430, 1953 |
| AcsI | RAATTY | 2 cut(s) | 1758, 2009 |
| AcuI | CTGAAG | 6 cut(s) | 201, 717, 747, 882, 2163, 2469 |
| AcyI | GRCGYC | 1 cut(s) | 1116 |
| AfaI | GTAC | 1 cut(s) | 2239 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 445 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 613, 2440 |
| AjnI | CCWGG | 4 cut(s) | 712, 1230, 2233, 2563 |
| Alw21I | GWGCWC | 1 cut(s) | 2217 |
| Alw26I | GTCTC | 7 cut(s) | 253, 355, 740, 1385, 1550, 1823, 2222 |
| AlwI | GGATC | 2 cut(s) | 430, 1953 |
| AoxI | GGCC | 1 cut(s) | 809 |
| ApeKI | GCWGC | 5 cut(s) | 344, 815, 1196, 1682, 2192 |
| ApoI | RAATTY | 2 cut(s) | 1758, 2009 |
| AspS9I | GGNCC | 2 cut(s) | 809, 1228 |
| AsuC2I | CCSGG | 2 cut(s) | 440, 2554 |
| AsuHPI | GGTGA | 6 cut(s) | 15, 79, 808, 1849, 2360, 2441 |
| AsuNHI | GCTAGC | 1 cut(s) | 1987 |
| AvaII | GGWCC | 1 cut(s) | 1228 |
| BanI | GGYRCC | 1 cut(s) | 1516 |
| BbsI | GAAGAC | 3 cut(s) | 2001, 2436, 2457 |
| Bbv12I | GWGCWC | 1 cut(s) | 2217 |
| BbvCI | CCTCAGC | 1 cut(s) | 225 |
| BbvI | GCAGC | 5 cut(s) | 331, 827, 1208, 1694, 2204 |
| BccI | CCATC | 6 cut(s) | 92, 1085, 1724, 2146, 2335, 2420 |
| BciT130I | CCWGG | 4 cut(s) | 714, 1232, 2235, 2565 |
| BcnI | CCSGG | 2 cut(s) | 440, 2554 |
| BcoDI | GTCTC | 7 cut(s) | 253, 355, 740, 1385, 1550, 1823, 2222 |
| BfaI | CTAG | 8 cut(s) | 161, 308, 884, 1016, 1050, 1340, 1940, 1988 |
| BfmI | CTRYAG | 5 cut(s) | 213, 468, 498, 813, 2190 |
| BfuAI | ACCTGC | 2 cut(s) | 2197, 2463 |
| BisI | GCNGC | 5 cut(s) | 345, 816, 1197, 1683, 2193 |
| BlpI | GCTNAGC | 1 cut(s) | 2475 |
| BlsI | GCNGC | 5 cut(s) | 346, 817, 1198, 1684, 2194 |
| Bme1390I | CCNGG | 6 cut(s) | 440, 714, 1232, 2235, 2554, 2565 |
| Bme18I | GGWCC | 1 cut(s) | 1228 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 613, 2440 |
| BmgT120I | GGNCC | 2 cut(s) | 809, 1228 |
| BmiI | GGNNCC | 1 cut(s) | 1518 |
| BmrFI | CCNGG | 6 cut(s) | 440, 714, 1232, 2235, 2554, 2565 |
| BmsI | GCATC | 8 cut(s) | 29, 229, 331, 415, 535, 731, 1361, 1480 |
| BmtI | GCTAGC | 1 cut(s) | 1991 |
| BpiI | GAAGAC | 3 cut(s) | 2001, 2436, 2457 |
| BpmI | CTGGAG | 7 cut(s) | 614, 677, 983, 1050, 1418, 1583, 2547 |
| Bpu10I | CCTNAGC | 1 cut(s) | 225 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2475 |
| BpuEI | CTTGAG | 3 cut(s) | 720, 776, 791 |
| BpuMI | CCSGG | 2 cut(s) | 440, 2554 |
| BsaHI | GRCGYC | 1 cut(s) | 1116 |
| BsaJI | CCNNGG | 1 cut(s) | 2592 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1212, 1242 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 445 |
| Bse1I | ACTGG | 4 cut(s) | 581, 597, 660, 1520 |
| BseBI | CCWGG | 4 cut(s) | 714, 1232, 2235, 2565 |
| BseDI | CCNNGG | 1 cut(s) | 2592 |
| BseGI | GGATG | 7 cut(s) | 793, 853, 1735, 1783, 2287, 2389, 2602 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 445 |
| BseNI | ACTGG | 4 cut(s) | 581, 597, 660, 1520 |
| BseRI | GAGGAG | 5 cut(s) | 242, 458, 540, 773, 1236 |
| BseXI | GCAGC | 5 cut(s) | 331, 827, 1208, 1694, 2204 |
| BseYI | CCCAGC | 1 cut(s) | 2171 |
| BsgI | GTGCAG | 2 cut(s) | 692, 803 |
| BshFI | GGCC | 1 cut(s) | 811 |
| BshNI | GGYRCC | 1 cut(s) | 1516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2217 |
| BsiSI | CCGG | 2 cut(s) | 440, 2553 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 445 |
| BsmAI | GTCTC | 7 cut(s) | 253, 355, 740, 1385, 1550, 1823, 2222 |
| BsmI | GAATGC | 2 cut(s) | 340, 839 |
| BsnI | GGCC | 1 cut(s) | 811 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2217 |
| Bsp143I | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2475 |
| BspACI | CCGC | 5 cut(s) | 1647, 1671, 1835, 1943, 2418 |
| BspANI | GGCC | 1 cut(s) | 811 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspLI | GGNNCC | 1 cut(s) | 1518 |
| BspMAI | CTGCAG | 2 cut(s) | 817, 2194 |
| BspMI | ACCTGC | 2 cut(s) | 2197, 2463 |
| BspOI | GCTAGC | 1 cut(s) | 1991 |
| BspPI | GGATC | 2 cut(s) | 430, 1953 |
| BspT107I | GGYRCC | 1 cut(s) | 1516 |
| BsrI | ACTGG | 4 cut(s) | 581, 597, 660, 1520 |
| BssECI | CCNNGG | 1 cut(s) | 2592 |
| BssMI | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| BssNI | GRCGYC | 1 cut(s) | 1116 |
| BssT1I | CCWWGG | 1 cut(s) | 2592 |
| Bst2UI | CCWGG | 4 cut(s) | 714, 1232, 2235, 2565 |
| Bst4CI | ACNGT | 7 cut(s) | 16, 628, 1129, 1372, 1537, 2063, 2242 |
| Bst6I | CTCTTC | 9 cut(s) | 69, 1185, 1341, 1401, 1506, 1566, 1671, 1842, 2265 |
| BstACI | GRCGYC | 1 cut(s) | 1116 |
| BstC8I | GCNNGC | 4 cut(s) | 782, 813, 1506, 1989 |
| BstF5I | GGATG | 7 cut(s) | 793, 853, 1735, 1783, 2287, 2389, 2602 |
| BstKTI | GATC | 4 cut(s) | 193, 438, 1948, 2401 |
| BstMAI | GTCTC | 7 cut(s) | 253, 355, 740, 1385, 1550, 1823, 2222 |
| BstMBI | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 344, 1349, 1514, 1679, 1997, 2332 |
| BstNI | CCWGG | 4 cut(s) | 714, 1232, 2235, 2565 |
| BstSCI | CCNGG | 6 cut(s) | 438, 712, 1230, 2233, 2552, 2563 |
| BstSFI | CTRYAG | 5 cut(s) | 213, 468, 498, 813, 2190 |
| BstV1I | GCAGC | 5 cut(s) | 331, 827, 1208, 1694, 2204 |
| BstV2I | GAAGAC | 3 cut(s) | 2001, 2436, 2457 |
| BstX2I | RGATCY | 1 cut(s) | 435 |
| BstYI | RGATCY | 1 cut(s) | 435 |
| BsuRI | GGCC | 1 cut(s) | 811 |
| BtsCI | GGATG | 7 cut(s) | 793, 853, 1735, 1783, 2287, 2389, 2602 |
| BtsI | GCAGTG | 2 cut(s) | 1206, 1692 |
| BtsIMutI | CAGTG | 5 cut(s) | 590, 624, 1206, 1692, 2068 |
| BveI | ACCTGC | 2 cut(s) | 2197, 2463 |
| Cac8I | GCNNGC | 4 cut(s) | 782, 813, 1506, 1989 |
| CciI | TCATGA | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 2 cut(s) | 809, 1228 |
| CseI | GACGC | 2 cut(s) | 1124, 2006 |
| CsiI | ACCWGGT | 1 cut(s) | 2233 |
| Csp6I | GTAC | 1 cut(s) | 2238 |
| CviAII | CATG | 2 cut(s) | 194, 935 |
| CviQI | GTAC | 1 cut(s) | 2238 |
| DpnI | GATC | 4 cut(s) | 192, 437, 1947, 2400 |
| DpnII | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| DriI | GACNNNNNGTC | 2 cut(s) | 613, 2440 |
| Eam1104I | CTCTTC | 9 cut(s) | 69, 1185, 1341, 1401, 1506, 1566, 1671, 1842, 2265 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 613, 2440 |
| EarI | CTCTTC | 9 cut(s) | 69, 1185, 1341, 1401, 1506, 1566, 1671, 1842, 2265 |
| Eco130I | CCWWGG | 1 cut(s) | 2592 |
| Eco47I | GGWCC | 1 cut(s) | 1228 |
| Eco57I | CTGAAG | 6 cut(s) | 201, 717, 747, 882, 2163, 2469 |
| EcoO109I | RGGNCCY | 2 cut(s) | 809, 1228 |
| EcoRII | CCWGG | 4 cut(s) | 712, 1230, 2233, 2563 |
| EcoT14I | CCWWGG | 1 cut(s) | 2592 |
| ErhI | CCWWGG | 1 cut(s) | 2592 |
| FaeI | CATG | 2 cut(s) | 197, 938 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 120, 152 |
| FatI | CATG | 2 cut(s) | 193, 934 |
| FauI | CCCGC | 1 cut(s) | 2425 |
| FauNDI | CATATG | 1 cut(s) | 562 |
| Fnu4HI | GCNGC | 5 cut(s) | 345, 816, 1197, 1683, 2193 |
| FokI | GGATG | 7 cut(s) | 800, 860, 1742, 1790, 2294, 2396, 2609 |
| Fsp4HI | GCNGC | 5 cut(s) | 345, 816, 1197, 1683, 2193 |
| FspBI | CTAG | 8 cut(s) | 161, 308, 884, 1016, 1050, 1340, 1940, 1988 |
| GluI | GCNGC | 5 cut(s) | 345, 816, 1197, 1683, 2193 |
| GsaI | CCCAGC | 1 cut(s) | 2175 |
| GsuI | CTGGAG | 7 cut(s) | 614, 677, 983, 1050, 1418, 1583, 2547 |
| HaeIII | GGCC | 1 cut(s) | 811 |
| HapII | CCGG | 2 cut(s) | 440, 2553 |
| HgaI | GACGC | 2 cut(s) | 1124, 2006 |
| Hin1I | GRCGYC | 1 cut(s) | 1116 |
| Hin1II | CATG | 2 cut(s) | 197, 938 |
| HincII | GTYRAC | 2 cut(s) | 1931, 2119 |
| HindII | GTYRAC | 2 cut(s) | 1931, 2119 |
| HindIII | AAGCTT | 2 cut(s) | 752, 1002 |
| HpaII | CCGG | 2 cut(s) | 440, 2553 |
| HphI | GGTGA | 6 cut(s) | 15, 79, 808, 1849, 2360, 2441 |
| Hpy166II | GTNNAC | 3 cut(s) | 1484, 1931, 2119 |
| Hpy8I | GTNNAC | 3 cut(s) | 1484, 1931, 2119 |
| HpyCH4III | ACNGT | 7 cut(s) | 16, 628, 1129, 1372, 1537, 2063, 2242 |
| HpyCH4IV | ACGT | 4 cut(s) | 1425, 1716, 1866, 2127 |
| HpyCH4V | TGCA | 9 cut(s) | 20, 59, 673, 784, 815, 1493, 2050, 2192, 2390 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 344, 1349, 1514, 1679, 1997, 2332 |
| HpySE526I | ACGT | 4 cut(s) | 1425, 1716, 1866, 2127 |
| Hsp92I | GRCGYC | 1 cut(s) | 1116 |
| Hsp92II | CATG | 2 cut(s) | 197, 938 |
| Kzo9I | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| LmnI | GCTCC | 5 cut(s) | 247, 553, 947, 1094, 2168 |
| Lsp1109I | GCAGC | 5 cut(s) | 331, 827, 1208, 1694, 2204 |
| LweI | GCATC | 8 cut(s) | 29, 229, 331, 415, 535, 731, 1361, 1480 |
| MabI | ACCWGGT | 1 cut(s) | 2233 |
| MaeI | CTAG | 8 cut(s) | 161, 308, 884, 1016, 1050, 1340, 1940, 1988 |
| MaeII | ACGT | 4 cut(s) | 1425, 1716, 1866, 2127 |
| MaeIII | GTNAC | 9 cut(s) | 598, 730, 1264, 1421, 1429, 1594, 2287, 2299, 2359 |
| MalI | GATC | 4 cut(s) | 192, 437, 1947, 2400 |
| MboI | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| MfeI | CAATTG | 2 cut(s) | 1452, 1617 |
| MflI | RGATCY | 1 cut(s) | 435 |
| MhlI | GDGCHC | 1 cut(s) | 2217 |
| MlyI | GAGTC | 4 cut(s) | 668, 1253, 1387, 1552 |
| MmeI | TCCRAC | 7 cut(s) | 262, 925, 1198, 1519, 1684, 1824, 1834 |
| MseI | TTAA | 9 cut(s) | 110, 138, 155, 642, 1083, 1290, 1793, 2093, 2604 |
| MspA1I | CMGCKG | 3 cut(s) | 818, 1280, 1835 |
| MspI | CCGG | 2 cut(s) | 440, 2553 |
| MspR9I | CCNGG | 6 cut(s) | 440, 714, 1232, 2235, 2554, 2565 |
| MunI | CAATTG | 2 cut(s) | 1452, 1617 |
| Mva1269I | GAATGC | 2 cut(s) | 340, 839 |
| MvaI | CCWGG | 4 cut(s) | 714, 1232, 2235, 2565 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 344, 1349, 1514, 1679, 1997, 2332 |
| NciI | CCSGG | 2 cut(s) | 440, 2554 |
| NdeI | CATATG | 1 cut(s) | 562 |
| NdeII | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| NheI | GCTAGC | 1 cut(s) | 1987 |
| NlaIII | CATG | 2 cut(s) | 197, 938 |
| NlaIV | GGNNCC | 1 cut(s) | 1518 |
| NmuCI | GTSAC | 1 cut(s) | 2287 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PctI | GAATGC | 2 cut(s) | 340, 839 |
| PfoI | TCCNGGA | 2 cut(s) | 438, 1230 |
| PkrI | GCNGC | 5 cut(s) | 346, 817, 1198, 1684, 2194 |
| PleI | GAGTC | 4 cut(s) | 667, 1252, 1387, 1552 |
| PpsI | GAGTC | 4 cut(s) | 667, 1252, 1387, 1552 |
| PpuMI | RGGWCCY | 1 cut(s) | 1228 |
| Psp5II | RGGWCCY | 1 cut(s) | 1228 |
| Psp6I | CCWGG | 4 cut(s) | 712, 1230, 2233, 2563 |
| PspFI | CCCAGC | 1 cut(s) | 2171 |
| PspGI | CCWGG | 4 cut(s) | 712, 1230, 2233, 2563 |
| PspN4I | GGNNCC | 1 cut(s) | 1518 |
| PspPI | GGNCC | 2 cut(s) | 809, 1228 |
| PspPPI | RGGWCCY | 1 cut(s) | 1228 |
| PstI | CTGCAG | 2 cut(s) | 817, 2194 |
| PsuI | RGATCY | 1 cut(s) | 435 |
| PvuII | CAGCTG | 2 cut(s) | 818, 1280 |
| RsaI | GTAC | 1 cut(s) | 2239 |
| RsaNI | GTAC | 1 cut(s) | 2238 |
| SaqAI | TTAA | 9 cut(s) | 110, 138, 155, 642, 1083, 1290, 1793, 2093, 2604 |
| SatI | GCNGC | 5 cut(s) | 345, 816, 1197, 1683, 2193 |
| Sau3AI | GATC | 4 cut(s) | 190, 435, 1945, 2398 |
| Sau96I | GGNCC | 2 cut(s) | 809, 1228 |
| SchI | GAGTC | 4 cut(s) | 668, 1253, 1387, 1552 |
| ScrFI | CCNGG | 6 cut(s) | 440, 714, 1232, 2235, 2554, 2565 |
| SduI | GDGCHC | 1 cut(s) | 2217 |
| SexAI | ACCWGGT | 1 cut(s) | 2233 |
| SfaNI | GCATC | 8 cut(s) | 29, 229, 331, 415, 535, 731, 1361, 1480 |
| SfcI | CTRYAG | 5 cut(s) | 213, 468, 498, 813, 2190 |
| SinI | GGWCC | 1 cut(s) | 1228 |
| SmlI | CTYRAG | 3 cut(s) | 735, 755, 770 |
| SmoI | CTYRAG | 3 cut(s) | 735, 755, 770 |
| SsiI | CCGC | 5 cut(s) | 1647, 1671, 1835, 1943, 2418 |
| SspI | AATATT | 2 cut(s) | 973, 1274 |
| SspMI | CTAG | 8 cut(s) | 161, 308, 884, 1016, 1050, 1340, 1940, 1988 |
| StyD4I | CCNGG | 6 cut(s) | 438, 712, 1230, 2233, 2552, 2563 |
| StyI | CCWWGG | 1 cut(s) | 2592 |
| TaaI | ACNGT | 7 cut(s) | 16, 628, 1129, 1372, 1537, 2063, 2242 |
| TaiI | ACGT | 4 cut(s) | 1428, 1719, 1869, 2130 |
| TaqI | TCGA | 4 cut(s) | 189, 1695, 2401, 2570 |
| Tru1I | TTAA | 9 cut(s) | 110, 138, 155, 642, 1083, 1290, 1793, 2093, 2604 |
| Tru9I | TTAA | 9 cut(s) | 110, 138, 155, 642, 1083, 1290, 1793, 2093, 2604 |
| TscAI | CASTG | 5 cut(s) | 597, 624, 1206, 1692, 2068 |
| TseFI | GTSAC | 1 cut(s) | 2287 |
| TseI | GCWGC | 5 cut(s) | 344, 815, 1196, 1682, 2192 |
| Tsp45I | GTSAC | 1 cut(s) | 2287 |
| TspRI | CASTG | 5 cut(s) | 597, 624, 1206, 1692, 2068 |
| VpaK11BI | GGWCC | 1 cut(s) | 1228 |
| XapI | RAATTY | 2 cut(s) | 1758, 2009 |
| XbaI | TCTAGA | 4 cut(s) | 160, 307, 883, 1049 |
| XspI | CTAG | 8 cut(s) | 161, 308, 884, 1016, 1050, 1340, 1940, 1988 |