Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011090

Physical Location & Seq

Genomic Coordinates Reverse (-)

2536451 .. 2538372

Gene Structure 1922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1012900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAAATGGTTAAGATGATATCAGGAATCTTGGCAGATGAGGGACTTCGTCATCCATTTACATTAAACGGGAGTCTTTTGAAGACAGGTGAGACATGCTGTAACATGAAACTGGCAGAGACACTCAGTCAAATTTCGAAGTTTGGTCCCATAGCCTTCTATAATGGATCAATTGGATCGAAATTGGTCAGAGATATTCAAAAGCTTGGAGGAATACGAACAATGAAGGATTTGCAAAATTATAAAGTTAAGCTGAGGAAGCCTGTATCTGCTGACACATTAGGGCTTAAAATATTGACTATGCCTCCTCCTTCTGGAGGTCCTCCGATGATACTTATGCTAAACATTCTTTCACAATATGGAAATGCTTCTGGAGTTTCTGATCCTCTTTGGACTCATTGGGAAATTGAATCTTTGAAACATGCTTTCGCCGTGAGGATGAATCTTGGTGACCCTGAGTTTATATCCTATTATTACATATACTCCTCAACCAATAGTTGTCATTATAACGACTCGTTTCCTAACAGGTGGAGGCAAATCAATGACCATGGCACCAGTCATTTGTCTGTCATAGATCCTCAAGGAAATGCCATCTCCATGACTGGTACTGTGAATGGATACTTTGGTGCTAATGTATTGTCGTCGAGTACAGGGATTGTCTTAAACAATGAAATGGACGACTTCTCTATACCTGGAAATGATTCTACAGGTCTACCACCAGCACCACCCAATTTTATCAGGCCAGGAAAAAGGCCATTATCGCCCATGACACCAGCTATAATCCTAAAGGATGGCCAACTAAAAGCTGTCGTGGGCGCAAGTATGGGAGCCTTGATCATTCCTGCGACTGCAGAGGTTCTCGTAAACCATTTTGCTAGGGGAATGGATCCACTCTCTTCTGTCATGGCTCCTGTTAAGGAATCTCCTACATCAAAGGAGATCAGTTCGTCAACAACACAATCTGCTCCATCAACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006508 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009505 GO:0009506 GO:0009636 GO:0009987 GO:0015711 GO:0015833 GO:0016020 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0030054 GO:0030312 GO:0034220 GO:0034635 GO:0034641 GO:0034775 GO:0035443 GO:0035672 GO:0036374 GO:0042219 GO:0042221 GO:0042886 GO:0042939 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051181 GO:0051186 GO:0051187 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0070011 GO:0070887 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072337 GO:0072348 GO:0097237 GO:0098656 GO:0098754 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

327

Amino Acids

35.14

Weight (kDa)

8.65

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	10 - 304	1.1e-85	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69820 AT4G39640 AT4G39640
fragaria_vesca	FvH4_1g21940
malus_domestica	MD05G1012900.v1.1 MD12G1028800.v1.1
prunus_persica	Prupe.6G176700_v2.0.a1
pyrus_communis	pycom12g02760
rosa_chinensis	RchiOBHm_Chr2g0115961
rosa_laevigata	RLG00000018227
rosa_multiflora	Rmu_sc0016984.1_g000001 Rmu_ssc0000197.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127630 Rroxscaffold_2G00128460
rosa_rugosa	Rorug02G0202000 Rorug02G0202100
rosa_samantha	Rh2AG258400 Rh2BG269700 Rh2CG265000
rosa_wichuraiana	Rw2G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	243, 507
AccB1I	GGYRCC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	712
AclWI	GGATC	6 cut(s)	175, 184, 377, 569, 881, 894
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	2 cut(s)	607, 649
AfiI	CCNNNNNNNGG	2 cut(s)	314, 317
AgsI	TTSAA	4 cut(s)	82, 200, 410, 418
AhdI	GACNNNNNGTC	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	691, 742
AluBI	AGCT	4 cut(s)	205, 253, 776, 806
AluI	AGCT	4 cut(s)	205, 253, 776, 806
Alw26I	GTCTC	2 cut(s)	86, 113
AlwI	GGATC	6 cut(s)	175, 184, 377, 569, 881, 894
AoxI	GGCC	3 cut(s)	740, 752, 793
ApoI	RAATTY	1 cut(s)	132
Asp700I	GAANNNNTTC	2 cut(s)	367, 700
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	2 cut(s)	146, 320
AsuHPI	GGTGA	2 cut(s)	101, 461
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	146, 320
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	254
BccI	CCATC	3 cut(s)	599, 785, 976
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	2 cut(s)	693, 744
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	834
BcoDI	GTCTC	2 cut(s)	86, 113
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	2 cut(s)	705, 849
BfuI	GTATCC	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	693, 744
Bme18I	GGWCC	2 cut(s)	146, 320
BmeRI	GACNNNNNGTC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	146, 320
BmiI	GGNNCC	5 cut(s)	148, 553, 829, 888, 909
BmrFI	CCNGG	2 cut(s)	693, 744
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	2 cut(s)	336, 393
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 317
Bse1I	ACTGG	3 cut(s)	117, 555, 607
BseBI	CCWGG	2 cut(s)	693, 744
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	3 cut(s)	52, 444, 796
BseLI	CCNNNNNNNGG	2 cut(s)	314, 317
BseMII	CTCAG	3 cut(s)	139, 245, 447
BseNI	ACTGG	3 cut(s)	117, 555, 607
BseRI	GAGGAG	2 cut(s)	297, 475
BshFI	GGCC	3 cut(s)	742, 754, 795
BshNI	GGYRCC	1 cut(s)	551
BslFI	GGGAC	2 cut(s)	57, 132
BslI	CCNNNNNNNGG	2 cut(s)	314, 317
BsmAI	GTCTC	2 cut(s)	86, 113
BsmFI	GGGAC	2 cut(s)	57, 132
BsnI	GGCC	3 cut(s)	742, 754, 795
Bsp119I	TTCGAA	1 cut(s)	137
Bsp143I	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
Bsp19I	CCATGG	1 cut(s)	547
BspANI	GGCC	3 cut(s)	742, 754, 795
BspCNI	CTCAG	3 cut(s)	138, 246, 448
BspLI	GGNNCC	5 cut(s)	148, 553, 829, 888, 909
BspMAI	CTGCAG	1 cut(s)	853
BspPI	GGATC	6 cut(s)	175, 184, 377, 569, 881, 894
BspT104I	TTCGAA	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	551
BsrI	ACTGG	3 cut(s)	117, 555, 607
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	2 cut(s)	693, 744
Bst4CI	ACNGT	2 cut(s)	610, 976
Bst6I	CTCTTC	1 cut(s)	901
BstBI	TTCGAA	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	125, 254, 456
BstDSI	CCRYGG	1 cut(s)	547
BstEII	GGTNACC	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	52, 444, 796
BstHHI	GCGC	1 cut(s)	818
BstKTI	GATC	7 cut(s)	170, 179, 385, 577, 837, 889, 942
BstMAI	GTCTC	2 cut(s)	86, 113
BstMBI	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 760
BstNI	CCWGG	2 cut(s)	693, 744
BstNSI	RCATGY	2 cut(s)	99, 425
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	691, 742
BstSFI	CTRYAG	2 cut(s)	705, 849
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	2 cut(s)	574, 886
BstYI	RGATCY	2 cut(s)	574, 886
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	742, 754, 795
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	52, 444, 796
CfoI	GCGC	1 cut(s)	818
Cfr13I	GGNCC	2 cut(s)	146, 320
Csp6I	GTAC	2 cut(s)	606, 648
CviAII	CATG	7 cut(s)	96, 106, 422, 548, 598, 766, 904
CviQI	GTAC	2 cut(s)	606, 648
DdeI	CTNAG	3 cut(s)	125, 254, 456
DpnI	GATC	7 cut(s)	169, 178, 384, 576, 836, 888, 941
DpnII	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
DriI	GACNNNNNGTC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	901
Eam1105I	GACNNNNNGTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	901
Eco130I	CCWWGG	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	146, 320
Eco91I	GGTNACC	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	691, 742
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	7 cut(s)	99, 109, 425, 551, 601, 769, 907
FaqI	GGGAC	2 cut(s)	57, 132
FatI	CATG	7 cut(s)	95, 105, 421, 547, 597, 765, 903
FbaI	TGATCA	1 cut(s)	834
FblI	GTMKAC	1 cut(s)	712
FokI	GGATG	3 cut(s)	39, 451, 803
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	1 cut(s)	817
GsuI	CTGGAG	2 cut(s)	336, 393
HaeIII	GGCC	3 cut(s)	742, 754, 795
HhaI	GCGC	1 cut(s)	818
Hin1II	CATG	7 cut(s)	99, 109, 425, 551, 601, 769, 907
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	8 cut(s)	27, 73, 394, 410, 442, 512, 701, 920
HphI	GGTGA	2 cut(s)	101, 461
Hpy166II	GTNNAC	3 cut(s)	713, 865, 951
Hpy188I	TCNGA	3 cut(s)	191, 327, 382
Hpy188III	TCNNGA	3 cut(s)	24, 315, 372
Hpy8I	GTNNAC	3 cut(s)	713, 865, 951
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	3 cut(s)	166, 220, 321
HpyCH4III	ACNGT	2 cut(s)	610, 976
HpyCH4V	TGCA	3 cut(s)	4, 235, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 760
HpyF3I	CTNAG	3 cut(s)	125, 254, 456
Hsp92II	CATG	7 cut(s)	99, 109, 425, 551, 601, 769, 907
HspAI	GCGC	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	834
Kzo9I	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
LmnI	GCTCC	3 cut(s)	827, 913, 970
MaeI	CTAG	1 cut(s)	876
MaeIII	GTNAC	2 cut(s)	101, 449
MalI	GATC	7 cut(s)	169, 178, 384, 576, 836, 888, 941
MboI	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
MboII	GAAGA	2 cut(s)	94, 888
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	574, 886
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	6 cut(s)	132, 171, 182, 238, 405, 730
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	3 cut(s)	82, 388, 506
Mox20I	TGGCCA	1 cut(s)	795
MroXI	GAANNNNTTC	2 cut(s)	367, 700
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	6 cut(s)	12, 65, 249, 288, 662, 915
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	1 cut(s)	795
MspR9I	CCNGG	2 cut(s)	693, 744
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	693, 744
MwoI	GCNNNNNNNGC	2 cut(s)	259, 760
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
NlaIII	CATG	7 cut(s)	99, 109, 425, 551, 601, 769, 907
NlaIV	GGNNCC	5 cut(s)	148, 553, 829, 888, 909
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	2 cut(s)	99, 425
NspV	TTCGAA	1 cut(s)	137
PdmI	GAANNNNTTC	2 cut(s)	367, 700
PfeI	GAWTC	5 cut(s)	27, 410, 442, 701, 920
PflFI	GACNNNGTC	1 cut(s)	48
PleI	GAGTC	3 cut(s)	81, 388, 506
PpsI	GAGTC	3 cut(s)	81, 388, 506
PpuMI	RGGWCCY	1 cut(s)	320
PsiI	TTATAA	2 cut(s)	243, 507
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	691, 742
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	691, 742
PspN4I	GGNNCC	5 cut(s)	148, 553, 829, 888, 909
PspPI	GGNCC	2 cut(s)	146, 320
PspPPI	RGGWCCY	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	853
PsuI	RGATCY	2 cut(s)	574, 886
PsyI	GACNNNGTC	1 cut(s)	48
RsaI	GTAC	2 cut(s)	607, 649
RsaNI	GTAC	2 cut(s)	606, 648
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	6 cut(s)	12, 65, 249, 288, 662, 915
Sau3AI	GATC	7 cut(s)	167, 176, 382, 574, 834, 886, 939
Sau96I	GGNCC	2 cut(s)	146, 320
SchI	GAGTC	3 cut(s)	82, 388, 506
ScrFI	CCNGG	2 cut(s)	693, 744
SfcI	CTRYAG	2 cut(s)	705, 849
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	146, 320
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	6 cut(s)	132, 171, 182, 238, 405, 730
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	876
StyD4I	CCNGG	2 cut(s)	691, 742
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	610, 976
TaqI	TCGA	3 cut(s)	137, 179, 644
TasI	AATT	6 cut(s)	132, 171, 182, 238, 405, 730
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	5 cut(s)	27, 410, 442, 701, 920
Tru1I	TTAA	6 cut(s)	12, 65, 249, 288, 662, 915
Tru9I	TTAA	6 cut(s)	12, 65, 249, 288, 662, 915
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	122, 239, 455, 684
Tth111I	GACNNNGTC	1 cut(s)	48
VpaK11BI	GGWCC	2 cut(s)	146, 320
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	99, 425
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	2 cut(s)	367, 700
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.