Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011090

Physical Location & Seq

Genomic Coordinates Forward (+)

18901524 .. 18902809

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0202100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAGGATATGATTCAGACGACGAATAGGCAAAAGACACTGCCTACAATTGTCTCAACACAGTTGACAAATTCCTCTCATCTTCTTCACTGGGCAAAGGGACCATTGCTGAACTCTTATTTCGGTTGCCCAAACTGCCTTGTTTGGAGGGTTGAAGTCAGAGAGTTGCATATCAGTTGCCGAGAGGATCCTAAATCAGTTTGCAACAAGGCATTAATTGACTTGAGTGAGAGAAGCGAAGATTCAGATTATGGTGGCATCGCGCCTCTTGTGAATGGGTGTGCAACAGTATTCCAATACCTTCAGCAGCATCATTTTGAACACATAAAAGAAACCACCGGGATCACTCTTAAAGTCTTGAAGGATGCGTTTTATCATTTGGAACGGGGAAGTGATCGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006508 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009505 GO:0009506 GO:0009636 GO:0009987 GO:0015711 GO:0015833 GO:0016020 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0030054 GO:0030312 GO:0034220 GO:0034635 GO:0034641 GO:0034775 GO:0035443 GO:0035672 GO:0036374 GO:0042219 GO:0042221 GO:0042886 GO:0042939 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051181 GO:0051186 GO:0051187 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0070011 GO:0070887 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072337 GO:0072348 GO:0097237 GO:0098656 GO:0098754 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

134

Amino Acids

15.28

Weight (kDa)

6.64

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69820 AT4G39640 AT4G39640
fragaria_vesca	FvH4_1g21940
malus_domestica	MD05G1012900.v1.1 MD12G1028800.v1.1
prunus_persica	Prupe.6G176700_v2.0.a1
pyrus_communis	pycom12g02760
rosa_chinensis	RchiOBHm_Chr2g0115961
rosa_laevigata	RLG00000018227
rosa_multiflora	Rmu_sc0016984.1_g000001 Rmu_ssc0000197.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127630 Rroxscaffold_2G00128460
rosa_rugosa	Rorug02G0202000 Rorug02G0202100
rosa_samantha	Rh2AG258400 Rh2BG269700 Rh2CG265000
rosa_wichuraiana	Rw2G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AclWI	GGATC	3 cut(s)	182, 195, 350
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	155, 320, 361
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	182, 195, 350
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	102, 189
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	3 cut(s)	267, 319, 355
BmuI	ACTGGG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	187, 342, 394
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	2 cut(s)	102, 189
BspPI	GGATC	3 cut(s)	182, 195, 350
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	187, 342, 394
Bst4CI	ACNGT	2 cut(s)	63, 289
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	3 cut(s)	190, 345, 397
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	3 cut(s)	187, 342, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 88
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	101
DpnI	GATC	3 cut(s)	189, 344, 396
DpnII	GATC	3 cut(s)	187, 342, 394
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	287
FaiI	YATR	4 cut(s)	11, 171, 252, 326
FaqI	GGGAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	308
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	308
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	13, 242
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	18, 161, 247
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	311, 355
HpyCH4III	ACNGT	2 cut(s)	63, 289
HpyCH4V	TGCA	4 cut(s)	4, 169, 204, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	3 cut(s)	187, 342, 394
LpnPI	CCDG	2 cut(s)	76, 352
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	3 cut(s)	267, 319, 355
MalI	GATC	3 cut(s)	189, 344, 396
MboI	GATC	3 cut(s)	187, 342, 394
MboII	GAAGA	3 cut(s)	74, 77, 251
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	3 cut(s)	48, 70, 216
MnlI	CCTC	4 cut(s)	85, 141, 178, 276
MseI	TTAA	2 cut(s)	215, 351
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	187, 342, 394
NlaIV	GGNNCC	2 cut(s)	102, 189
NmeAIII	GCCGAG	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	13, 242
PkrI	GCNGC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	102, 189
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	215, 351
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	3 cut(s)	187, 342, 394
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	1 cut(s)	303
SfaNI	GCATC	3 cut(s)	267, 319, 355
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	3 cut(s)	48, 70, 216
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	63, 289
TaqI	TCGA	1 cut(s)	397
TasI	AATT	3 cut(s)	48, 70, 216
TfiI	GAWTC	2 cut(s)	13, 242
Tru1I	TTAA	2 cut(s)	215, 351
Tru9I	TTAA	2 cut(s)	215, 351
TscAI	CASTG	2 cut(s)	45, 95
TseI	GCWGC	1 cut(s)	307
TspRI	CASTG	2 cut(s)	45, 95
VpaK11BI	GGWCC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.