Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011090

Physical Location & Seq

Genomic Coordinates Forward (+)

18896026 .. 18899631

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0202000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCTATCACCGTCGCTTTCTCCTTCAAATTCCATCGCAAAACAAACACCTAATTTCACAAGTGATTTTCGGAGCTTGCAGTGTTCTCTCTCAGGTGTTTGTTTTGCGATGGAATTTGAAGGAGAAAGCGATAGCATCGAAGGCACTAAGGGACCTCAGTGCTCGAAGAGTGAAGAAGCTCCTAAAGCGAACACACAGCAAGATGGAGATTCTTCAAGTCCATTGGAGGAACAGCATCTAAAGAACCAGTGGACACAGTTGTACACAACAGCCCTCCTGAGCACGCCGTTCGTCAAATCCATAGTTCTGATGATTGTTCAGACAGTTACTGGGAATCTGATGTTACATCTGATGGATCATCAAACTGTTCTTGCACTCTTGAAGGCTTTTGCACTTTACAGTCGTGCTTTGAATTTTATGGTATGGAGTAAGCTTCTAGGATTTGGTACGGAATTGGTTCCCCTATCAAAAAGCCTTTCAGACATGTCAGCGACTTGCAAGGAAGAGTCCCAGGTCCAAGGTTCAATCTACAACACGTTTGAAGGTGGATACAATGAGATCTTCCTTCAAGAGATCCTAACTGTACTGTCCCAATGGCCTGATGAACCTCGCCGGTTGGTCTTAATGCTTGTCAACTTTCTCAATTTAGTCCTAGAGGATGCAGAAATTGATTTAGATGACGAAGACGCAAAAATAACTGCCTTCGAATGTCTCACAAAAATTGACGAATTCCTCTCATCTTCTTCACTGGACGAGGGGACCATTGAAGCACTCTTATTTGAGTTGCCCAAGAAAGTTGCCTTGTTTGGAGGTGTGTCAGATAAATGTGTAGAAGTTGCCAAGAGCATCCTTGATCAATTTGCATCAAGGTTTGGTGCTGAAAGGCTTGCAGTTTGTGGAAAGGAACCAGTGGACAGAGTTAGACACAACAGTTGTCATGAGCAAGTCAATCTTCAGATCAGTAATTCTGGTGATTGCTCAGAGAGGGACTTGATGATTCCCATACTGAAGCAGATGTATCAGTCAATAGGCAATGATGAAGGTGGTGTACAAGTGTGCATCAGAGAAGCTATTCAACATTTTCAAGAGATTGACCATAGACTGCCTAAGGAGTCCAGCGAGTATATCGAGGATGTTGTATCTGATGAATCTTCAAAGCATTGTACAGTGACTGCGATGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006508 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009505 GO:0009506 GO:0009636 GO:0009987 GO:0015711 GO:0015833 GO:0016020 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0030054 GO:0030312 GO:0034220 GO:0034635 GO:0034641 GO:0034775 GO:0035443 GO:0035672 GO:0036374 GO:0042219 GO:0042221 GO:0042886 GO:0042939 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051181 GO:0051186 GO:0051187 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0070011 GO:0070887 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072337 GO:0072348 GO:0097237 GO:0098656 GO:0098754 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

394

Amino Acids

43.74

Weight (kDa)

4.61

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69820 AT4G39640 AT4G39640
fragaria_vesca	FvH4_1g21940
malus_domestica	MD05G1012900.v1.1 MD12G1028800.v1.1
prunus_persica	Prupe.6G176700_v2.0.a1
pyrus_communis	pycom12g02760
rosa_chinensis	RchiOBHm_Chr2g0115961
rosa_laevigata	RLG00000018227
rosa_multiflora	Rmu_sc0016984.1_g000001 Rmu_ssc0000197.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127630 Rroxscaffold_2G00128460
rosa_rugosa	Rorug02G0202000 Rorug02G0202100
rosa_samantha	Rh2AG258400 Rh2BG269700 Rh2CG265000
rosa_wichuraiana	Rw2G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	363, 568
AcsI	RAATTY	4 cut(s)	28, 113, 412, 728
AcuI	CTGAAG	2 cut(s)	938, 1028
AfaI	GTAC	5 cut(s)	263, 448, 585, 1050, 1165
AflIII	ACRYGT	2 cut(s)	483, 534
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	4 cut(s)	75, 179, 433, 1070
AluI	AGCT	4 cut(s)	75, 179, 433, 1070
Alw21I	GWGCWC	2 cut(s)	164, 284
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	2 cut(s)	363, 568
AlwNI	CAGNNNCTG	2 cut(s)	329, 1172
AoxI	GGCC	1 cut(s)	596
ApoI	RAATTY	4 cut(s)	28, 113, 412, 728
Asp700I	GAANNNNTTC	2 cut(s)	456, 1071
AspS9I	GGNCC	3 cut(s)	152, 514, 759
AsuHPI	GGTGA	1 cut(s)	983
AsuII	TTCGAA	1 cut(s)	705
AvaII	GGWCC	3 cut(s)	152, 514, 759
AxyI	CCTNAGG	1 cut(s)	1107
BarI	GAAGNNNNNNTAC	2 cut(s)	1032, 1064
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	164, 284
BccI	CCATC	4 cut(s)	41, 103, 197, 346
BceAI	ACGGC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	542
BclI	TGATCA	1 cut(s)	853
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	3 cut(s)	437, 653, 1183
BfuI	GTATCC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	3 cut(s)	152, 514, 759
BmgT120I	GGNCC	3 cut(s)	152, 514, 759
BmiI	GGNNCC	4 cut(s)	153, 459, 760, 906
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	6 cut(s)	144, 244, 649, 855, 872, 1068
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	705
BsaJI	CCNNGG	2 cut(s)	510, 517
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	4 cut(s)	247, 334, 753, 908
Bse21I	CCTNAGG	1 cut(s)	1107
Bse3DI	GCAATG	1 cut(s)	1039
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	510, 517
BseGI	GGATG	3 cut(s)	664, 846, 1138
BseMI	GCAATG	1 cut(s)	1039
BseMII	CTCAG	4 cut(s)	105, 170, 269, 993
BseNI	ACTGG	4 cut(s)	247, 334, 753, 908
BshFI	GGCC	1 cut(s)	598
BsiHKAI	GWGCWC	2 cut(s)	164, 284
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	5 cut(s)	165, 493, 574, 772, 1001
BsmAI	GTCTC	1 cut(s)	716
BsmFI	GGGAC	5 cut(s)	165, 493, 574, 772, 1001
BsnI	GGCC	1 cut(s)	598
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	164, 284
Bsp1407I	TGTACA	3 cut(s)	261, 1048, 1163
Bsp143I	GATC	5 cut(s)	355, 558, 573, 853, 957
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	4 cut(s)	104, 169, 270, 992
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	4 cut(s)	153, 459, 760, 906
BspPI	GGATC	2 cut(s)	363, 568
BspT104I	TTCGAA	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	1039
BsrFI	RCCGGY	1 cut(s)	612
BsrGI	TGTACA	3 cut(s)	261, 1048, 1163
BsrI	ACTGG	4 cut(s)	247, 334, 753, 908
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	510, 517
BssMI	GATC	5 cut(s)	355, 558, 573, 853, 957
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	9 cut(s)	12, 258, 325, 367, 401, 583, 588, 932, 1168
Bst6I	CTCTTC	2 cut(s)	161, 498
BstAUI	TGTACA	3 cut(s)	261, 1048, 1163
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	3 cut(s)	77, 284, 888
BstDEI	CTNAG	6 cut(s)	91, 147, 156, 278, 979, 1107
BstF5I	GGATG	3 cut(s)	664, 846, 1138
BstKTI	GATC	5 cut(s)	358, 561, 576, 856, 960
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	5 cut(s)	355, 558, 573, 853, 957
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 185
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	2 cut(s)	558, 573
BstYI	RGATCY	2 cut(s)	558, 573
Bsu36I	CCTNAGG	1 cut(s)	1107
BsuI	GTATCC	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	598
BtgZI	GCGATG	2 cut(s)	19, 122
BtsCI	GGATG	3 cut(s)	664, 846, 1138
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	6 cut(s)	86, 164, 254, 746, 915, 1173
Cac8I	GCNNGC	3 cut(s)	77, 284, 888
CaiI	CAGNNNCTG	2 cut(s)	329, 1172
CciI	TCATGA	1 cut(s)	937
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	3 cut(s)	152, 514, 759
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	5 cut(s)	262, 447, 584, 1049, 1164
CviAII	CATG	2 cut(s)	484, 938
CviJI	RGCY	9 cut(s)	75, 179, 272, 386, 433, 474, 598, 886, 1070
CviKI_1	RGCY	9 cut(s)	75, 179, 272, 386, 433, 474, 598, 886, 1070
CviQI	GTAC	5 cut(s)	262, 447, 584, 1049, 1164
DdeI	CTNAG	6 cut(s)	91, 147, 156, 278, 979, 1107
DpnI	GATC	5 cut(s)	357, 560, 575, 855, 959
DpnII	GATC	5 cut(s)	355, 558, 573, 853, 957
Eam1104I	CTCTTC	2 cut(s)	161, 498
EarI	CTCTTC	2 cut(s)	161, 498
Eco130I	CCWWGG	1 cut(s)	517
Eco47I	GGWCC	3 cut(s)	152, 514, 759
Eco57I	CTGAAG	2 cut(s)	938, 1028
Eco81I	CCTNAGG	1 cut(s)	1107
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	2 cut(s)	487, 941
FaiI	YATR	8 cut(s)	302, 419, 424, 485, 939, 1004, 1098, 1125
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	5 cut(s)	165, 493, 574, 772, 1001
FatI	CATG	2 cut(s)	483, 937
FbaI	TGATCA	1 cut(s)	853
FokI	GGATG	3 cut(s)	671, 833, 1145
FspBI	CTAG	3 cut(s)	437, 653, 1183
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	613
HgaI	GACGC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	487, 941
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	6 cut(s)	209, 334, 506, 997, 1112, 1148
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	1 cut(s)	983
Hpy166II	GTNNAC	5 cut(s)	252, 264, 634, 913, 1049
Hpy188III	TCNNGA	5 cut(s)	277, 379, 569, 938, 1085
Hpy8I	GTNNAC	5 cut(s)	252, 264, 634, 913, 1049
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	8 cut(s)	33, 113, 134, 376, 536, 575, 712, 1034
HpyCH4III	ACNGT	9 cut(s)	12, 258, 325, 367, 401, 583, 588, 932, 1168
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	8 cut(s)	79, 374, 392, 498, 662, 863, 890, 1059
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 185
HpyF3I	CTNAG	6 cut(s)	91, 147, 156, 278, 979, 1107
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	2 cut(s)	487, 941
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	5 cut(s)	355, 558, 573, 853, 957
LmnI	GCTCC	2 cut(s)	72, 184
LweI	GCATC	6 cut(s)	144, 244, 649, 855, 872, 1068
MaeI	CTAG	3 cut(s)	437, 653, 1183
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	3 cut(s)	325, 342, 1168
MalI	GATC	5 cut(s)	357, 560, 575, 855, 959
MboI	GATC	5 cut(s)	355, 558, 573, 853, 957
MflI	RGATCY	2 cut(s)	558, 573
MhlI	GDGCHC	2 cut(s)	164, 284
MlyI	GAGTC	2 cut(s)	515, 1121
MroXI	GAANNNNTTC	2 cut(s)	456, 1071
MseI	TTAA	1 cut(s)	623
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	141, 185
NdeII	GATC	5 cut(s)	355, 558, 573, 853, 957
NlaIII	CATG	2 cut(s)	487, 941
NlaIV	GGNNCC	4 cut(s)	153, 459, 760, 906
NmuCI	GTSAC	1 cut(s)	1168
NspI	RCATGY	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	705
PagI	TCATGA	1 cut(s)	937
PciI	ACATGT	1 cut(s)	483
PdmI	GAANNNNTTC	2 cut(s)	456, 1071
PfeI	GAWTC	4 cut(s)	209, 334, 997, 1148
PleI	GAGTC	2 cut(s)	514, 1120
PpsI	GAGTC	2 cut(s)	514, 1120
PpuMI	RGGWCCY	1 cut(s)	152
PscI	ACATGT	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	153, 459, 760, 906
PspPI	GGNCC	3 cut(s)	152, 514, 759
PspPPI	RGGWCCY	1 cut(s)	152
PstNI	CAGNNNCTG	2 cut(s)	329, 1172
PsuI	RGATCY	2 cut(s)	558, 573
RsaI	GTAC	5 cut(s)	263, 448, 585, 1050, 1165
RsaNI	GTAC	5 cut(s)	262, 447, 584, 1049, 1164
SaqAI	TTAA	1 cut(s)	623
Sau3AI	GATC	5 cut(s)	355, 558, 573, 853, 957
Sau96I	GGNCC	3 cut(s)	152, 514, 759
SchI	GAGTC	2 cut(s)	515, 1121
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	164, 284
SfaNI	GCATC	6 cut(s)	144, 244, 649, 855, 872, 1068
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	3 cut(s)	152, 514, 759
SspMI	CTAG	3 cut(s)	437, 653, 1183
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	9 cut(s)	12, 258, 325, 367, 401, 583, 588, 932, 1168
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	4 cut(s)	138, 164, 705, 1128
TatI	WGTACW	4 cut(s)	261, 583, 1048, 1163
TfiI	GAWTC	4 cut(s)	209, 334, 997, 1148
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	6 cut(s)	86, 164, 254, 753, 915, 1173
TseFI	GTSAC	1 cut(s)	1168
Tsp45I	GTSAC	1 cut(s)	1168
TspDTI	ATGAA	3 cut(s)	618, 1053, 1161
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	6 cut(s)	86, 164, 254, 753, 915, 1173
VpaK11BI	GGWCC	3 cut(s)	152, 514, 759
XapI	RAATTY	4 cut(s)	28, 113, 412, 728
XceI	RCATGY	1 cut(s)	487
XmnI	GAANNNNTTC	2 cut(s)	456, 1071
XspI	CTAG	3 cut(s)	437, 653, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.