Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016984.1

Orthogroup ID

OG0011090

Physical Location & Seq

Genomic Coordinates Reverse (-)

586 .. 2502

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016984.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgctaaacattctttccaaatatggaaatatttctggagtttccgatcctctttgggtccatcgacagattgagtccttgaagcatgtatttgctgtgaggatgaatcttggtgaccctgactttgttaatgtgactaaagttctagctgatatgctttctcctaaatttgccgaggagttaaagaaaaccatacttgacaacatgacatttgatcccagccattatggtggcaggtggggacagatcaatgatcatggcaccagtcatttgtccatcatagatcatgagcaaaatgccatctccatgaccactactgtgaattcatactttggtgcacaaatgctgtcatcaagtacaggaatagtcctaaacaatgaaatggatgatttctccatacctggaaatgtttcaacagttccaccaccagcgccagccaattttatcaggccgggaaaaagaccattgtcatcaatgacacctaccataatgctgaaggatgagcaacttaaagcagttgtaggtgcaagtggaggaaccatgatcattgctgcaacagcagaggtcctcttaaatcattttgcaaggggaatggatccactctcttctgtcctggctccacggttttatcatcagctgtatcctaatgtggtgcactatgagaactggacaaccgtgataggtgatcactttgaacttcctgctcaaatcaggaaatccctacaaaagaaaggccatgtccttgagcctcttgctggtggagctatttgccagtttatagttatagaagttttgaagaaaaatggaggtagtcaagagtttgtggccgtgagtgatccaagaaaaggagggattcctgctggtttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006508 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009505 GO:0009506 GO:0009636 GO:0009987 GO:0015711 GO:0015833 GO:0016020 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0030054 GO:0030312 GO:0034220 GO:0034635 GO:0034641 GO:0034775 GO:0035443 GO:0035672 GO:0036374 GO:0042219 GO:0042221 GO:0042886 GO:0042939 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051181 GO:0051186 GO:0051187 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0070011 GO:0070887 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072337 GO:0072348 GO:0097237 GO:0098656 GO:0098754 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

289

Amino Acids

31.58

Weight (kDa)

6.59

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69820 AT4G39640 AT4G39640
fragaria_vesca	FvH4_1g21940
malus_domestica	MD05G1012900.v1.1 MD12G1028800.v1.1
prunus_persica	Prupe.6G176700_v2.0.a1
pyrus_communis	pycom12g02760
rosa_chinensis	RchiOBHm_Chr2g0115961
rosa_laevigata	RLG00000018227
rosa_multiflora	Rmu_sc0016984.1_g000001 Rmu_ssc0000197.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127630 Rroxscaffold_2G00128460
rosa_rugosa	Rorug02G0202000 Rorug02G0202100
rosa_samantha	Rh2AG258400 Rh2BG269700 Rh2CG265000
rosa_wichuraiana	Rw2G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	260
AclWI	GGATC	5 cut(s)	41, 209, 590, 603, 830
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	2 cut(s)	167, 322
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	755, 845
AgsI	TTSAA	4 cut(s)	82, 414, 695, 796
AjnI	CCWGG	2 cut(s)	400, 612
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	3 cut(s)	149, 637, 764
AluI	AGCT	3 cut(s)	149, 637, 764
Alw21I	GWGCWC	2 cut(s)	340, 657
Alw44I	GTGCAC	2 cut(s)	336, 653
AlwI	GGATC	5 cut(s)	41, 209, 590, 603, 830
AoxI	GGCC	3 cut(s)	449, 733, 825
ApaLI	GTGCAC	2 cut(s)	336, 653
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	167, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	2 cut(s)	31, 409
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	58, 565
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	125, 695
AvaII	GGWCC	2 cut(s)	58, 565
BaeGI	GKGCMC	2 cut(s)	340, 657
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	340, 657
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	69, 284, 308
BceAI	ACGGC	1 cut(s)	812
BciT130I	CCWGG	2 cut(s)	402, 614
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	3 cut(s)	253, 543, 685
BcnI	CCSGG	1 cut(s)	453
BfaI	CTAG	2 cut(s)	146, 868
BfoI	RGCGCY	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	402, 453, 614
Bme18I	GGWCC	2 cut(s)	58, 565
BmgT120I	GGNCC	2 cut(s)	58, 565
BmiI	GGNNCC	5 cut(s)	59, 262, 538, 597, 618
BmrFI	CCNGG	3 cut(s)	402, 453, 614
BoxI	GACNNNNGTC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	174, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	755, 845
Bse1I	ACTGG	3 cut(s)	264, 671, 772
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	402, 614
BseDI	CCNNGG	2 cut(s)	174, 620
BseGI	GGATG	3 cut(s)	108, 391, 505
BseLI	CCNNNNNNNGG	2 cut(s)	755, 845
BseMI	GCAATG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	264, 671, 772
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	2 cut(s)	340, 657
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	218
BshFI	GGCC	3 cut(s)	451, 735, 827
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	340, 657
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	755, 845
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	3 cut(s)	451, 735, 827
Bsp1286I	GDGCHC	2 cut(s)	340, 657
Bsp143I	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
BspANI	GGCC	3 cut(s)	451, 735, 827
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	5 cut(s)	59, 262, 538, 597, 618
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	5 cut(s)	41, 209, 590, 603, 830
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	264, 671, 772
BssECI	CCNNGG	2 cut(s)	174, 620
BssMI	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
Bst2UI	CCWGG	2 cut(s)	402, 614
Bst4CI	ACNGT	4 cut(s)	319, 418, 624, 676
Bst6I	CTCTTC	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	620
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	3 cut(s)	108, 391, 505
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	9 cut(s)	49, 217, 249, 256, 286, 546, 598, 688, 838
BstMBI	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 761
BstNI	CCWGG	2 cut(s)	402, 614
BstNSI	RCATGY	1 cut(s)	89
BstPAI	GACNNNNGTC	1 cut(s)	466
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	400, 451, 612
BstSLI	GKGCMC	2 cut(s)	340, 657
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	451, 735, 827
BtgI	CCRYGG	1 cut(s)	620
BtsCI	GGATG	3 cut(s)	108, 391, 505
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	58, 565
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	7 cut(s)	86, 205, 257, 287, 307, 541, 737
CviQI	GTAC	1 cut(s)	357
DpnI	GATC	9 cut(s)	48, 216, 248, 255, 285, 545, 597, 687, 837
DpnII	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	58, 565
Eco57I	CTGAAG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	565
EcoO65I	GGTNACC	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	400, 612
FaeI	CATG	7 cut(s)	89, 208, 260, 290, 310, 544, 740
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	7 cut(s)	85, 204, 256, 286, 306, 540, 736
FbaI	TGATCA	3 cut(s)	253, 543, 685
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	115, 398, 512
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	2 cut(s)	146, 868
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	451, 735, 827
HapII	CCGG	1 cut(s)	452
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	7 cut(s)	89, 208, 260, 290, 310, 544, 740
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HinfI	GANTC	3 cut(s)	74, 106, 853
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	2 cut(s)	125, 695
Hpy166II	GTNNAC	2 cut(s)	338, 655
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	4 cut(s)	36, 287, 712, 815
Hpy8I	GTNNAC	2 cut(s)	338, 655
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	4 cut(s)	319, 418, 624, 676
HpyCH4V	TGCA	5 cut(s)	338, 527, 554, 584, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 761
Hsp92II	CATG	7 cut(s)	89, 208, 260, 290, 310, 544, 740
HspAI	GCGC	1 cut(s)	431
Ksp22I	TGATCA	3 cut(s)	253, 543, 685
Kzo9I	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
LmnI	GCTCC	2 cut(s)	622, 761
Lsp1109I	GCAGC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	146, 868
MaeIII	GTNAC	2 cut(s)	113, 133
MalI	GATC	9 cut(s)	48, 216, 248, 255, 285, 545, 597, 687, 837
MboI	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
MboII	GAAGA	2 cut(s)	597, 808
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	340, 657
MluCI	AATT	3 cut(s)	167, 322, 439
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	60, 93, 169, 527, 556, 578, 759, 800, 842
MroXI	GAANNNNTTC	2 cut(s)	31, 409
MseI	TTAA	4 cut(s)	129, 182, 510, 572
MslI	CAYNNNNRTG	3 cut(s)	228, 305, 317
MspA1I	CMGCKG	1 cut(s)	637
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	3 cut(s)	402, 453, 614
MvaI	CCWGG	2 cut(s)	402, 614
MwoI	GCNNNNNNNGC	2 cut(s)	557, 761
NciI	CCSGG	1 cut(s)	453
NdeII	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
NlaIII	CATG	7 cut(s)	89, 208, 260, 290, 310, 544, 740
NlaIV	GGNNCC	5 cut(s)	59, 262, 538, 597, 618
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	113, 133
NspI	RCATGY	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	31, 409
PfeI	GAWTC	2 cut(s)	106, 853
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	400, 612
PspEI	GGTNACC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	400, 612
PspN4I	GGNNCC	5 cut(s)	59, 262, 538, 597, 618
PspPI	GGNCC	2 cut(s)	58, 565
PspPPI	RGGWCCY	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	3 cut(s)	228, 305, 317
SaqAI	TTAA	4 cut(s)	129, 182, 510, 572
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	9 cut(s)	46, 214, 246, 253, 283, 543, 595, 685, 835
Sau96I	GGNCC	2 cut(s)	58, 565
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	402, 453, 614
SduI	GDGCHC	2 cut(s)	340, 657
SinI	GGWCC	2 cut(s)	58, 565
SmiMI	CAYNNNNRTG	3 cut(s)	228, 305, 317
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	3 cut(s)	167, 322, 439
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	146, 868
StyD4I	CCNGG	3 cut(s)	400, 451, 612
TaaI	ACNGT	4 cut(s)	319, 418, 624, 676
TaqI	TCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	167, 322, 439
TatI	WGTACW	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	106, 853
Tru1I	TTAA	4 cut(s)	129, 182, 510, 572
Tru9I	TTAA	4 cut(s)	129, 182, 510, 572
TseFI	GTSAC	2 cut(s)	113, 133
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	2 cut(s)	113, 133
TspDTI	ATGAA	3 cut(s)	119, 315, 393
VneI	GTGCAC	2 cut(s)	336, 653
VpaK11BI	GGWCC	2 cut(s)	58, 565
XapI	RAATTY	2 cut(s)	167, 322
XceI	RCATGY	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	31, 409
XspI	CTAG	2 cut(s)	146, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.