Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011090

Physical Location & Seq

Genomic Coordinates Reverse (-)

29568709 .. 29590339

Gene Structure 21631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG258400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTATGCTGCCAATGCTACTTTGAAAAGTAAAGGGGCTCTCTCTGTAGCGATTCCAGGGGAACTGGCAGGCCTTCATGAAGCTTGGAAACAACATGGAAGGCTTCCATGGGAAAGGCTTGTAAAGCCTGCTGAGCGCCTTGCTCGTTTGGGATTTAAGATTTCACCATACCTCAACATGCAAATGACTAGAACAGAATCAGGAATTTTGGCAGATGAGGGCCTTCGTCATATATTTACATCAAAAGGGAGGCTCTTACAGACAGGTGTAACATGCCGTAACAGGAAACTGGCAGAGACACTCAGACAAATCTCAAAGTTTGGTCCCGTAGCCTTCTATAATGGTTCCATTGGATCCAAATTCATTAGAGATATTCGAAAGTCTGGAGGAATACTTACAATGAATGATTTACAAAGTTATAAAGTTAAAGTGACAAAGCCAGTATCTATTGACACTCTGGGACATAAAATACTAGCTATGCCTCCCCCTTCTGGAGGTCCTCTTTTGATACTAATGCTAAACATTCTTTCCAAATATGGAAATATTTCTGGAGTTTCCGATCCTCTTTGGGTCCATCGACAGATTGAGTCCTTGAAGCATGTATTTGCTGTGAGGATGAATCTTGGTGACCCTGACTTTGTTAATGTGACTAAAGTTCTAGCTGATATGCTTTCTCCTAAATTTGCCGAGGAGTTAAAGAAAACCATACTTGACAACATGACATTTGATCCCAGCCATTATGGTGGCAGGTGGGGACAGATCAATGATCATGGCACCAGTCATTTGTCCATCATAGATCATGAGCAAAATACCATCTCCATGACCACTACTGTGAATTCATACTTTGGTGCACAAATGCTGTCATCAAGTACAGGAATAGTCCTGAACAATGAAATGGATGATTTCTCCATACCTGGAAATGTTTCAACAGTTCCACCACCAGCGCCAGCCAATTTTATCAGGCCGGGAAAAAGACCATTGTCATCAATGACACCTACCATAATCCTGAAGGATGAGCAACTTAAAGCAGTTGTAGGTGCAAGTGGAGGAGCCATGATCATTCCTGCAACAGCAGAGGTCCTCTTAAATCATTTTGCAAGGGGAATGGATCCACTCTCTTCTGTCCTGGCTCCACGGTTTTATCATCAGCTGTATCCTAATGTGGTGCACTATGAGAACTGGACAACCGTGATAGGTGATCACTTTGAACTTCCTGCTCAAATCAGGAAATCCCTACAAAAGAAAGGCCATGTCCTTGAGCCTCTTGCTGGTGGAGCTATTTGCCAGTTTATAGTTATAGAAGTTTTGAAGAAAAATGGAGGTAGTCAAGAGTTTGTGGCCGTGAGTGATCCAAGAAAAGGAGGGATTCCTGCTGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006508 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009056 GO:0009505 GO:0009506 GO:0009636 GO:0009987 GO:0015711 GO:0015833 GO:0016020 GO:0016740 GO:0016746 GO:0016755 GO:0016756 GO:0016787 GO:0019538 GO:0030054 GO:0030312 GO:0034220 GO:0034635 GO:0034641 GO:0034775 GO:0035443 GO:0035672 GO:0036374 GO:0042219 GO:0042221 GO:0042886 GO:0042939 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051181 GO:0051186 GO:0051187 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0070011 GO:0070887 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072337 GO:0072348 GO:0097237 GO:0098656 GO:0098754 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00430 ko00460 ko00480 ko00590 ko01100 map00430 map00460 map00480 map00590 map01100

Pfam Domains

Protein Families

G_glu_transpept

Protein Analysis

460

Amino Acids

50.36

Weight (kDa)

9.56

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G_glu_transpept	PF01019	1 - 455	9.4e-142	Gamma-glutamyltranspeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69820 AT4G39640 AT4G39640
fragaria_vesca	FvH4_1g21940
malus_domestica	MD05G1012900.v1.1 MD12G1028800.v1.1
prunus_persica	Prupe.6G176700_v2.0.a1
pyrus_communis	pycom12g02760
rosa_chinensis	RchiOBHm_Chr2g0115961
rosa_laevigata	RLG00000018227
rosa_multiflora	Rmu_sc0016984.1_g000001 Rmu_ssc0000197.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127630 Rroxscaffold_2G00128460
rosa_rugosa	Rorug02G0202000 Rorug02G0202100
rosa_samantha	Rh2AG258400 Rh2BG269700 Rh2CG265000
rosa_wichuraiana	Rw2G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AarI	CACCTGC	1 cut(s)	738
Acc36I	ACCTGC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	773
AclWI	GGATC	7 cut(s)	348, 361, 554, 722, 1103, 1116, 1343
AcoI	YGGCCR	1 cut(s)	1338
AcsI	RAATTY	4 cut(s)	204, 359, 680, 835
AcuI	CTGAAG	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	871
AfiI	CCNNNNNNNGG	4 cut(s)	491, 494, 1268, 1358
AgsI	TTSAA	5 cut(s)	25, 595, 927, 1208, 1309
AjnI	CCWGG	3 cut(s)	55, 913, 1125
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	5 cut(s)	83, 476, 662, 1150, 1277
AluI	AGCT	5 cut(s)	83, 476, 662, 1150, 1277
Alw21I	GWGCWC	2 cut(s)	853, 1170
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	2 cut(s)	849, 1166
AlwI	GGATC	7 cut(s)	348, 361, 554, 722, 1103, 1116, 1343
AoxI	GGCC	5 cut(s)	70, 220, 962, 1246, 1338
ApaLI	GTGCAC	2 cut(s)	849, 1166
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	4 cut(s)	204, 359, 680, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
Asp700I	GAANNNNTTC	2 cut(s)	544, 922
AspLEI	GCGC	2 cut(s)	138, 946
AspS9I	GGNCC	5 cut(s)	220, 323, 497, 571, 1078
AsuC2I	CCSGG	1 cut(s)	966
AsuHPI	GGTGA	3 cut(s)	156, 638, 1208
AsuII	TTCGAA	1 cut(s)	376
AvaII	GGWCC	4 cut(s)	323, 497, 571, 1078
BaeGI	GKGCMC	2 cut(s)	853, 1170
BamHI	GGATCC	2 cut(s)	353, 1108
BanI	GGYRCC	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	853, 1170
BccI	CCATC	3 cut(s)	582, 797, 821
BceAI	ACGGC	2 cut(s)	261, 1325
BciT130I	CCWGG	3 cut(s)	57, 915, 1127
BciVI	GTATCC	1 cut(s)	1164
BclI	TGATCA	3 cut(s)	766, 1056, 1198
BcnI	CCSGG	1 cut(s)	966
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	4 cut(s)	189, 473, 659, 1381
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	2 cut(s)	139, 947
BfuAI	ACCTGC	1 cut(s)	738
BfuI	GTATCC	1 cut(s)	1164
BisI	GCNGC	1 cut(s)	9
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	4 cut(s)	57, 915, 966, 1127
Bme18I	GGWCC	4 cut(s)	323, 497, 571, 1078
BmgT120I	GGNCC	5 cut(s)	220, 323, 497, 571, 1078
BmiI	GGNNCC	8 cut(s)	325, 346, 355, 572, 775, 1051, 1110, 1131
BmrFI	CCNGG	4 cut(s)	57, 915, 966, 1127
BoxI	GACNNNNGTC	1 cut(s)	979
BpmI	CTGGAG	3 cut(s)	405, 513, 570
Bpu1102I	GCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	1277
BpuMI	CCSGG	1 cut(s)	966
BsaJI	CCNNGG	4 cut(s)	56, 107, 687, 1133
Bsc4I	CCNNNNNNNGG	4 cut(s)	491, 494, 1268, 1358
Bse1I	ACTGG	6 cut(s)	69, 294, 440, 777, 1184, 1285
BseBI	CCWGG	3 cut(s)	57, 915, 1127
BseDI	CCNNGG	4 cut(s)	56, 107, 687, 1133
BseGI	GGATG	3 cut(s)	621, 904, 1018
BseLI	CCNNNNNNNGG	4 cut(s)	491, 494, 1268, 1358
BseMII	CTCAG	2 cut(s)	123, 316
BseNI	ACTGG	6 cut(s)	69, 294, 440, 777, 1184, 1285
BseRI	GAGGAG	2 cut(s)	704, 1062
BseSI	GKGCMC	2 cut(s)	853, 1170
BseYI	CCCAGC	1 cut(s)	731
BshFI	GGCC	5 cut(s)	72, 222, 964, 1248, 1340
BshNI	GGYRCC	1 cut(s)	773
BsiHKAI	GWGCWC	2 cut(s)	853, 1170
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	3 cut(s)	309, 474, 768
BslI	CCNNNNNNNGG	4 cut(s)	491, 494, 1268, 1358
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	3 cut(s)	309, 474, 768
BsnI	GGCC	5 cut(s)	72, 222, 964, 1248, 1340
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	3 cut(s)	40, 853, 1170
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	107
BspANI	GGCC	5 cut(s)	72, 222, 964, 1248, 1340
BspCNI	CTCAG	2 cut(s)	124, 315
BspHI	TCATGA	2 cut(s)	76, 799
BspLI	GGNNCC	8 cut(s)	325, 346, 355, 572, 775, 1051, 1110, 1131
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	7 cut(s)	348, 361, 554, 722, 1103, 1116, 1343
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	773
BsrI	ACTGG	6 cut(s)	69, 294, 440, 777, 1184, 1285
BssECI	CCNNGG	4 cut(s)	56, 107, 687, 1133
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	3 cut(s)	57, 915, 1127
Bst4CI	ACNGT	4 cut(s)	832, 931, 1137, 1189
Bst6I	CTCTTC	1 cut(s)	1123
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	70, 129, 948
BstDEI	CTNAG	2 cut(s)	132, 302
BstDSI	CCRYGG	2 cut(s)	107, 1133
BstEII	GGTNACC	1 cut(s)	626
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	3 cut(s)	621, 904, 1018
BstH2I	RGCGCY	2 cut(s)	139, 947
BstHHI	GCGC	2 cut(s)	138, 946
BstMAI	GTCTC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 124, 133, 1274
BstNI	CCWGG	3 cut(s)	57, 915, 1127
BstNSI	RCATGY	3 cut(s)	181, 276, 602
BstPAI	GACNNNNGTC	1 cut(s)	979
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	4 cut(s)	55, 913, 964, 1125
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	2 cut(s)	853, 1170
BstX2I	RGATCY	2 cut(s)	353, 1108
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	2 cut(s)	353, 1108
BsuI	GTATCC	1 cut(s)	1164
BsuRI	GGCC	5 cut(s)	72, 222, 964, 1248, 1340
BtgI	CCRYGG	2 cut(s)	107, 1133
BtsCI	GGATG	3 cut(s)	621, 904, 1018
BveI	ACCTGC	1 cut(s)	738
Cac8I	GCNNGC	3 cut(s)	70, 129, 948
CciI	TCATGA	2 cut(s)	76, 799
CfoI	GCGC	2 cut(s)	138, 946
Cfr13I	GGNCC	5 cut(s)	220, 323, 497, 571, 1078
Csp6I	GTAC	1 cut(s)	870
CviQI	GTAC	1 cut(s)	870
DdeI	CTNAG	2 cut(s)	132, 302
EaeI	YGGCCR	1 cut(s)	1338
Eam1104I	CTCTTC	1 cut(s)	1123
EarI	CTCTTC	1 cut(s)	1123
Eco130I	CCWWGG	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	4 cut(s)	323, 497, 571, 1078
Eco57I	CTGAAG	1 cut(s)	1028
Eco91I	GGTNACC	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoO109I	RGGNCCY	3 cut(s)	220, 497, 1078
EcoO65I	GGTNACC	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	835
EcoRII	CCWGG	3 cut(s)	55, 913, 1125
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	107
FaqI	GGGAC	3 cut(s)	309, 474, 768
FbaI	TGATCA	3 cut(s)	766, 1056, 1198
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	628, 911, 1025
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	4 cut(s)	189, 473, 659, 1381
GlaI	GCGC	2 cut(s)	137, 945
GluI	GCNGC	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	735
GsuI	CTGGAG	3 cut(s)	405, 513, 570
HaeII	RGCGCY	2 cut(s)	139, 947
HaeIII	GGCC	5 cut(s)	72, 222, 964, 1248, 1340
HapII	CCGG	1 cut(s)	965
HhaI	GCGC	2 cut(s)	138, 946
Hin6I	GCGC	2 cut(s)	136, 944
HinP1I	GCGC	2 cut(s)	136, 944
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	5 cut(s)	52, 197, 587, 619, 1366
HpaII	CCGG	1 cut(s)	965
HphI	GGTGA	3 cut(s)	156, 638, 1208
Hpy166II	GTNNAC	2 cut(s)	851, 1168
Hpy188I	TCNGA	2 cut(s)	305, 559
Hpy8I	GTNNAC	2 cut(s)	851, 1168
HpyAV	CCTTC	6 cut(s)	83, 93, 233, 343, 498, 1003
HpyCH4III	ACNGT	4 cut(s)	832, 931, 1137, 1189
HpyCH4V	TGCA	6 cut(s)	181, 851, 1040, 1067, 1097, 1168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 124, 133, 1274
HpyF3I	CTNAG	2 cut(s)	132, 302
HspAI	GCGC	2 cut(s)	136, 944
Ksp22I	TGATCA	3 cut(s)	766, 1056, 1198
LmnI	GCTCC	3 cut(s)	1049, 1135, 1274
MaeI	CTAG	4 cut(s)	189, 473, 659, 1381
MaeIII	GTNAC	5 cut(s)	268, 278, 430, 626, 646
MboII	GAAGA	2 cut(s)	1110, 1321
MflI	RGATCY	2 cut(s)	353, 1108
MhlI	GDGCHC	3 cut(s)	40, 853, 1170
MluCI	AATT	5 cut(s)	204, 359, 680, 835, 952
MlyI	GAGTC	1 cut(s)	596
MroXI	GAANNNNTTC	2 cut(s)	544, 922
MseI	TTAA	6 cut(s)	156, 426, 642, 695, 1023, 1085
MslI	CAYNNNNRTG	4 cut(s)	182, 741, 818, 830
MspA1I	CMGCKG	1 cut(s)	1150
MspI	CCGG	1 cut(s)	965
MspR9I	CCNGG	4 cut(s)	57, 915, 966, 1127
MvaI	CCWGG	3 cut(s)	57, 915, 1127
MwoI	GCNNNNNNNGC	4 cut(s)	14, 124, 133, 1274
NciI	CCSGG	1 cut(s)	966
NcoI	CCATGG	1 cut(s)	107
NlaIV	GGNNCC	8 cut(s)	325, 346, 355, 572, 775, 1051, 1110, 1131
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	3 cut(s)	430, 626, 646
NspI	RCATGY	3 cut(s)	181, 276, 602
NspV	TTCGAA	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	830
PagI	TCATGA	2 cut(s)	76, 799
PaqCI	CACCTGC	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	544, 922
PfeI	GAWTC	4 cut(s)	52, 197, 619, 1366
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PpuMI	RGGWCCY	2 cut(s)	497, 1078
PshAI	GACNNNNGTC	1 cut(s)	979
PsiI	TTATAA	1 cut(s)	420
Psp5II	RGGWCCY	2 cut(s)	497, 1078
Psp6I	CCWGG	3 cut(s)	55, 913, 1125
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	731
PspGI	CCWGG	3 cut(s)	55, 913, 1125
PspN4I	GGNNCC	8 cut(s)	325, 346, 355, 572, 775, 1051, 1110, 1131
PspPI	GGNCC	5 cut(s)	220, 323, 497, 571, 1078
PspPPI	RGGWCCY	2 cut(s)	497, 1078
PsuI	RGATCY	2 cut(s)	353, 1108
PvuII	CAGCTG	1 cut(s)	1150
RsaI	GTAC	1 cut(s)	871
RsaNI	GTAC	1 cut(s)	870
RseI	CAYNNNNRTG	4 cut(s)	182, 741, 818, 830
SaqAI	TTAA	6 cut(s)	156, 426, 642, 695, 1023, 1085
SatI	GCNGC	1 cut(s)	9
Sau96I	GGNCC	5 cut(s)	220, 323, 497, 571, 1078
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	4 cut(s)	57, 915, 966, 1127
SduI	GDGCHC	3 cut(s)	40, 853, 1170
SfcI	CTRYAG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	376
SinI	GGWCC	4 cut(s)	323, 497, 571, 1078
SmiMI	CAYNNNNRTG	4 cut(s)	182, 741, 818, 830
SmlI	CTYRAG	1 cut(s)	1256
SmoI	CTYRAG	1 cut(s)	1256
Sse9I	AATT	5 cut(s)	204, 359, 680, 835, 952
SseBI	AGGCCT	1 cut(s)	72
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	4 cut(s)	189, 473, 659, 1381
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	4 cut(s)	55, 913, 964, 1125
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	4 cut(s)	832, 931, 1137, 1189
TaqI	TCGA	2 cut(s)	376, 577
TasI	AATT	5 cut(s)	204, 359, 680, 835, 952
TatI	WGTACW	1 cut(s)	869
TfiI	GAWTC	4 cut(s)	52, 197, 619, 1366
Tru1I	TTAA	6 cut(s)	156, 426, 642, 695, 1023, 1085
Tru9I	TTAA	6 cut(s)	156, 426, 642, 695, 1023, 1085
TseFI	GTSAC	3 cut(s)	430, 626, 646
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	3 cut(s)	430, 626, 646
TspDTI	ATGAA	7 cut(s)	65, 93, 352, 416, 632, 828, 906
VneI	GTGCAC	2 cut(s)	849, 1166
VpaK11BI	GGWCC	4 cut(s)	323, 497, 571, 1078
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	4 cut(s)	204, 359, 680, 835
XceI	RCATGY	3 cut(s)	181, 276, 602
XmnI	GAANNNNTTC	2 cut(s)	544, 922
XspI	CTAG	4 cut(s)	189, 473, 659, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.