Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0017724

Physical Location & Seq

Genomic Coordinates Forward (+)

25793817 .. 25795078

Gene Structure 1262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1132000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGTGTTTGTCTGGTTGACATTCCTTCGTATTTTCCATGTCTCGACAAGCTTAGTTATCTTAACCTGACAGACTGCACCACACTCAAATATGTTCCGGAGATGCCAAGCAGTATTGAGTACTTACATTTAGATAGCACTGCAATAGAGGAATTGCCTTCTTCAGTTTGGTCTCTTGAAAAAATTCGGTGCTTGGAGCGTCCCAGGAATATACCAGTATTAGACTTGAGTGGGGCAGCGACTACTTGCAAAAATCTTGTGAGTCTCCCAAAGACCATTTGTAAATTAAAATCTCTGAATAGACTTGATCTGAGTGGAACCACAATAAAAAACCTACCTGCAAGCATTGGTAATATGAAATCTCTTGAGAAACTTGGTCTGAATGGAACTGCAATTGAAAGCGTACCTGCAAGCATTGGAGATTTGAAATCTCTTGAGAAACTTGATCTGAGTGGAACCACAATTAAAAGCCTACCTGCAAGCATTGGTAATTTGAAATCTCTTAAGAAACTTGATCTGTGTGGAAGTGCAATTGAAAGCCTACCTGCAAGCATTGGTAATTTGGAATTGAAACTTGATCTGTGTGGAAGTGCAATTGAAAGCCTACCTGCAAGCATTGGTAATTTGGAATCTCTTGAGAAACTTGATCTGAGTGGAAGCGCAATTGAAAGCCTACCTACAAGAATTGGAAATTTGAAATCTCTTGAGAAACTTGATCCGAGTGGAAGCGCAATTGAAAGCCTACCTGCAAGCATTGGTAATTTGAAATCTCTTGAGAAACTTGATCCAAGTGGAAGTGCAATTGAAAGCCTACCTGCAAGCATTGGTAATTTGGAATCTCTTGAGAAACTTGATCTGAGTAGAAGCGCAATTGAAAGCCTACCTGCAAGCATTGGTAATTTGAAATCTCTTGAAAAACTTGATCTGAGTGGAACTGCGAACAAGTGCCTACCCGCAAGCATCAAAGAAGCTTCTCGGCTGATTTGTCTGCGGTTAACCAATTGCAGGAGCCTTGAATCTTTACCAGAGCTCCCAGGGGTACGTTGGCTTCAAGCACATGGCTGCACGTCACTCAACAAAGTGTTGAGTTCAAAGATTGCCCTTACATTAGGTGGGATGAATATAAAAATTCTCAAGGACTTCAAGAGCAACTTACATTTTCAAATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009277 GO:0009986 GO:0009987 GO:0012505 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0030246 GO:0030312 GO:0030447 GO:0030448 GO:0031505 GO:0031974 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0051273 GO:0051275 GO:0070013 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUN

Protein Analysis

391

Amino Acids

41.47

Weight (kDa)

6.83

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	85 - 150	7.9e-12	Leucine-rich repeat region
LRR_4	PF12799	143 - 181	2.9e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	148 - 217	2.5e-13	Leucine-rich repeat region
LRR_14	PF23598	215 - 287	3.5e-13	Leucine-rich repeat region
LRR_8	PF13855	257 - 312	5.8e-07	Leucine rich repeat
LRR_14	PF23598	284 - 342	6e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017724)

Species	Orthologous Gene IDs
malus_domestica	MD04G1035300.v1.1 MD05G1132000.v1.1 MD08G1230100.v1.1 MD10G1020500.v1.1
pyrus_communis	pycom07g21920 pycom10g02290 pycom420g00780
rosa_chinensis	RchiOBHm_Chr1g0322431 RchiOBHm_Chr6g0287571
rosa_samantha	Rh6CG303600 Rh6CG314200 Rh6DG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	8 cut(s)	346, 415, 484, 553, 616, 754, 823, 892
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	2 cut(s)	954, 991
AclWI	GGATC	2 cut(s)	710, 779
AcsI	RAATTY	3 cut(s)	183, 691, 1128
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	3 cut(s)	122, 405, 1041
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AflII	CTTAAG	1 cut(s)	503
AjiI	CACGTC	1 cut(s)	1068
AjnI	CCWGG	2 cut(s)	203, 1033
AluBI	AGCT	3 cut(s)	52, 971, 1030
AluI	AGCT	3 cut(s)	52, 971, 1030
Alw21I	GWGCWC	1 cut(s)	1032
Alw26I	GTCTC	3 cut(s)	47, 177, 269
AlwI	GGATC	2 cut(s)	710, 779
Aor13HI	TCCGGA	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	236, 1062
ApoI	RAATTY	3 cut(s)	183, 691, 1128
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	3 cut(s)	662, 731, 869
BanII	GRGCYC	1 cut(s)	1032
BarI	GAAGNNNNNNTAC	2 cut(s)	1032, 1064
Bbv12I	GWGCWC	1 cut(s)	1032
BbvI	GCAGC	2 cut(s)	248, 1049
BciT130I	CCWGG	2 cut(s)	205, 1035
BcoDI	GTCTC	3 cut(s)	47, 177, 269
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	8 cut(s)	346, 415, 484, 553, 616, 754, 823, 892
BisI	GCNGC	2 cut(s)	237, 1063
BlsI	GCNGC	2 cut(s)	238, 1064
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	205, 1035
BmgBI	CACGTC	1 cut(s)	1068
BmiI	GGNNCC	3 cut(s)	319, 457, 1010
BmrFI	CCNGG	2 cut(s)	205, 1035
BmsI	GCATC	2 cut(s)	93, 969
BpuEI	CTTGAG	8 cut(s)	247, 386, 455, 656, 725, 794, 863, 1118
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	203, 1033, 1034
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	1014, 1044
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	205, 1035
BseDI	CCNNGG	3 cut(s)	203, 1033, 1034
BseGI	GGATG	1 cut(s)	1122
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMII	CTCAG	5 cut(s)	302, 440, 641, 848, 917
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	248, 1049
BsgI	GTGCAG	2 cut(s)	61, 1048
BsiHKAI	GWGCWC	1 cut(s)	1032
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	3 cut(s)	47, 177, 269
BsmFI	GGGAC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
BspACI	CCGC	2 cut(s)	954, 991
BspCNI	CTCAG	5 cut(s)	303, 441, 642, 849, 918
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	319, 457, 1010
BspMI	ACCTGC	8 cut(s)	346, 415, 484, 553, 616, 754, 823, 892
BspPI	GGATC	2 cut(s)	710, 779
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	203, 1033, 1034
BssMI	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
Bst2UI	CCWGG	2 cut(s)	205, 1035
BstAFI	CTTAAG	1 cut(s)	503
BstC8I	GCNNGC	9 cut(s)	343, 412, 481, 550, 613, 751, 820, 889, 958
BstDEI	CTNAG	6 cut(s)	53, 311, 449, 650, 857, 926
BstF5I	GGATG	1 cut(s)	1122
BstHHI	GCGC	3 cut(s)	662, 731, 869
BstKTI	GATC	9 cut(s)	310, 448, 517, 580, 649, 718, 787, 856, 925
BstMAI	GTCTC	3 cut(s)	47, 177, 269
BstMBI	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
BstNI	CCWGG	2 cut(s)	205, 1035
BstSCI	CCNGG	2 cut(s)	203, 1033
BstV1I	GCAGC	2 cut(s)	248, 1049
BtrI	CACGTC	1 cut(s)	1068
BtsCI	GGATG	1 cut(s)	1122
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	8 cut(s)	346, 415, 484, 553, 616, 754, 823, 892
Cac8I	GCNNGC	9 cut(s)	343, 412, 481, 550, 613, 751, 820, 889, 958
CfoI	GCGC	3 cut(s)	662, 731, 869
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	121, 404, 1040
CviAII	CATG	2 cut(s)	39, 1058
CviQI	GTAC	3 cut(s)	121, 404, 1040
DdeI	CTNAG	6 cut(s)	53, 311, 449, 650, 857, 926
DpnI	GATC	9 cut(s)	309, 447, 516, 579, 648, 717, 786, 855, 924
DpnII	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
Ecl136II	GAGCTC	1 cut(s)	1030
Eco24I	GRGCYC	1 cut(s)	1032
Eco31I	GGTCTC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	1030
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	1030
EcoRII	CCWGG	2 cut(s)	203, 1033
EcoT38I	GRGCYC	1 cut(s)	1032
FaeI	CATG	2 cut(s)	42, 1061
FaiI	YATR	7 cut(s)	40, 93, 212, 356, 1059, 1124, 1171
FalI	AAGNNNNNCTT	2 cut(s)	1136, 1168
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	38, 1057
FauI	CCCGC	1 cut(s)	961
Fnu4HI	GCNGC	2 cut(s)	237, 1063
FokI	GGATG	1 cut(s)	1129
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	2 cut(s)	237, 1063
GlaI	GCGC	3 cut(s)	661, 730, 868
GluI	GCNGC	2 cut(s)	237, 1063
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	3 cut(s)	662, 731, 869
Hin1II	CATG	2 cut(s)	42, 1061
Hin6I	GCGC	3 cut(s)	660, 729, 867
HinP1I	GCGC	3 cut(s)	660, 729, 867
HincII	GTYRAC	2 cut(s)	19, 996
HindII	GTYRAC	2 cut(s)	19, 996
HindIII	AAGCTT	2 cut(s)	50, 969
HinfI	GANTC	4 cut(s)	262, 629, 836, 1016
HpaI	GTTAAC	1 cut(s)	996
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	19, 996
Hpy188I	TCNGA	8 cut(s)	297, 312, 381, 450, 651, 720, 858, 927
Hpy8I	GTNNAC	2 cut(s)	19, 996
HpyAV	CCTTC	2 cut(s)	36, 168
HpyCH4IV	ACGT	2 cut(s)	1042, 1067
HpyF3I	CTNAG	6 cut(s)	53, 311, 449, 650, 857, 926
HpySE526I	ACGT	2 cut(s)	1042, 1067
Hsp92II	CATG	2 cut(s)	42, 1061
HspAI	GCGC	3 cut(s)	660, 729, 867
Kpn2I	TCCGGA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	996
Kzo9I	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
LmnI	GCTCC	3 cut(s)	196, 1008, 1035
Lsp1109I	GCAGC	2 cut(s)	248, 1049
LweI	GCATC	2 cut(s)	93, 969
MaeII	ACGT	2 cut(s)	1042, 1067
MaeIII	GTNAC	1 cut(s)	1068
MalI	GATC	9 cut(s)	309, 447, 516, 579, 648, 717, 786, 855, 924
MboI	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	8 cut(s)	393, 531, 594, 663, 732, 801, 870, 1000
MhlI	GDGCHC	1 cut(s)	1032
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	5 cut(s)	63, 287, 465, 504, 995
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	205, 1035
MunI	CAATTG	8 cut(s)	393, 531, 594, 663, 732, 801, 870, 1000
MvaI	CCWGG	2 cut(s)	205, 1035
NdeII	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
NlaIII	CATG	2 cut(s)	42, 1061
NlaIV	GGNNCC	3 cut(s)	319, 457, 1010
NmeAIII	GCCGAG	1 cut(s)	955
NmuCI	GTSAC	1 cut(s)	1068
PasI	CCCWGGG	1 cut(s)	1034
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	629, 836, 1016
PkrI	GCNGC	2 cut(s)	238, 1064
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	1032
Psp6I	CCWGG	2 cut(s)	203, 1033
PspGI	CCWGG	2 cut(s)	203, 1033
PspN4I	GGNNCC	3 cut(s)	319, 457, 1010
RsaI	GTAC	3 cut(s)	122, 405, 1041
RsaNI	GTAC	3 cut(s)	121, 404, 1040
SacI	GAGCTC	1 cut(s)	1032
SaqAI	TTAA	5 cut(s)	63, 287, 465, 504, 995
SatI	GCNGC	2 cut(s)	237, 1063
Sau3AI	GATC	9 cut(s)	307, 445, 514, 577, 646, 715, 784, 853, 922
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	205, 1035
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	2 cut(s)	93, 969
SmlI	CTYRAG	9 cut(s)	226, 365, 434, 503, 635, 704, 773, 842, 1133
SmoI	CTYRAG	9 cut(s)	226, 365, 434, 503, 635, 704, 773, 842, 1133
SsiI	CCGC	2 cut(s)	954, 991
SstI	GAGCTC	1 cut(s)	1032
StyD4I	CCNGG	2 cut(s)	203, 1033
TaiI	ACGT	2 cut(s)	1045, 1070
TaqI	TCGA	1 cut(s)	45
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	629, 836, 1016
Tru1I	TTAA	5 cut(s)	63, 287, 465, 504, 995
Tru9I	TTAA	5 cut(s)	63, 287, 465, 504, 995
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	1068
TseI	GCWGC	2 cut(s)	236, 1062
Tsp45I	GTSAC	1 cut(s)	1068
TspDTI	ATGAA	2 cut(s)	371, 1133
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	183, 691, 1128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1041
XmnI	GAANNNNTTC	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.