Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017724

Physical Location & Seq

Genomic Coordinates Forward (+)

49919074 .. 49919721

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGGCTCCCTACCAGCATTTGTAAGTTAAAATCTCTTCAGAGACTTTCTCTCTTTGGTTGCTGTAAATTCAAGGACTTCCCAGAAATCTTGGAGCCTATGGAGCGTCTGGAGTTTTTAAATTTAAGTAAAACAGCGATTGAAGAGCTACCCATGTCGACTGAAAATCTAGTCGGGCTAAAAATGTTGGAGCTGTCTAACTGCAAAAACCTTCGGTTTGTTCCAAGCAGCATCTACAAAATTAAATCTGTGGTCCTCGATGGTTGTAGGAAACTCCATTTTTTAAAGTTGGAGCGAGACCTCAGTTTCGGCTTCCGAATAATTACAGAAACCTTGGAGCCTATGGAGCGTCTGGAGTTTTTAAATTTAAGTAAAACGTTGGAGCTGTTTAACTGCAAAAACCTCCGGTTTGTCCCTGGCAAATCAAAAACTGTGGTCCTCGATGGTTGTTGGAAACACAGTTTTTTTAAGTTGGAGCGAGGCCTCAGTTTCCGAGAGCTACCCAGGTTGACTGAAAATCTAGTCGGGCTAAGAAAGTTGGAGCTGTTTTTGTCCCTGACCTCAGAGGATGACTCAGAGGATGATTTTTTGTCGCTGACCTCAGAGGATGACTCAGAGGATGATTTTTGGATGACTTTTTGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

215

Amino Acids

25.06

Weight (kDa)

5.63

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_13	PF23286	10 - 90	9.5e-11	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017724)

Species	Orthologous Gene IDs
malus_domestica	MD04G1035300.v1.1 MD05G1132000.v1.1 MD08G1230100.v1.1 MD10G1020500.v1.1
pyrus_communis	pycom07g21920 pycom10g02290 pycom420g00780
rosa_chinensis	RchiOBHm_Chr1g0322431 RchiOBHm_Chr6g0287571
rosa_samantha	Rh6CG303600 Rh6CG314200 Rh6DG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AclI	AACGTT	1 cut(s)	377
AcsI	RAATTY	3 cut(s)	68, 121, 364
AcuI	CTGAAG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	73, 143
AhdI	GACNNNNNGTC	1 cut(s)	639
AjnI	CCWGG	2 cut(s)	415, 503
AluBI	AGCT	5 cut(s)	148, 193, 385, 499, 544
AluI	AGCT	5 cut(s)	148, 193, 385, 499, 544
Alw26I	GTCTC	2 cut(s)	37, 291
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	3 cut(s)	68, 121, 364
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspS9I	GGNCC	2 cut(s)	253, 436
AvaII	GGWCC	2 cut(s)	253, 436
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	254, 437
BciT130I	CCWGG	2 cut(s)	417, 505
BcoDI	GTCTC	2 cut(s)	37, 291
BfaI	CTAG	2 cut(s)	170, 521
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	417, 505
Bme18I	GGWCC	2 cut(s)	253, 436
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	253, 436
BmiI	GGNNCC	3 cut(s)	8, 96, 339
BmrFI	CCNGG	2 cut(s)	417, 505
BmsI	GCATC	1 cut(s)	240
BplI	GAGNNNNNCTC	6 cut(s)	34, 66, 557, 589, 596, 628
BpmI	CTGGAG	2 cut(s)	131, 374
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	333, 415, 503
BsaWI	WCCGGW	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	417, 505
BseDI	CCNNGG	3 cut(s)	333, 415, 503
BseGI	GGATG	5 cut(s)	574, 586, 613, 625, 636
BseMII	CTCAG	6 cut(s)	316, 499, 576, 588, 615, 627
BseXI	GCAGC	1 cut(s)	240
BshFI	GGCC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	3 cut(s)	398, 538, 627
BsmAI	GTCTC	2 cut(s)	37, 291
BsmFI	GGGAC	3 cut(s)	398, 538, 627
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	6 cut(s)	315, 498, 575, 587, 614, 626
BspLI	GGNNCC	3 cut(s)	8, 96, 339
BspQI	GCTCTTC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	333, 415, 503
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	417, 505
Bst4CI	ACNGT	2 cut(s)	433, 461
Bst6I	CTCTTC	2 cut(s)	42, 138
BstDEI	CTNAG	7 cut(s)	302, 485, 530, 562, 574, 601, 613
BstF5I	GGATG	5 cut(s)	574, 586, 613, 625, 636
BstMAI	GTCTC	2 cut(s)	37, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 346
BstNI	CCWGG	2 cut(s)	417, 505
BstSCI	CCNGG	2 cut(s)	415, 503
BstV1I	GCAGC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	5 cut(s)	574, 586, 613, 625, 636
Cfr13I	GGNCC	2 cut(s)	253, 436
CseI	GACGC	2 cut(s)	95, 338
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	1 cut(s)	154
DdeI	CTNAG	7 cut(s)	302, 485, 530, 562, 574, 601, 613
DraI	TTTAAA	3 cut(s)	120, 285, 363
DriI	GACNNNNNGTC	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	42, 138
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	2 cut(s)	42, 138
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	253, 436
Eco57I	CTGAAG	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	415, 503
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	101, 155, 344
FaqI	GGGAC	3 cut(s)	398, 538, 627
FatI	CATG	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	5 cut(s)	581, 593, 620, 632, 643
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	170, 521
GluI	GCNGC	1 cut(s)	229
GsuI	CTGGAG	2 cut(s)	131, 374
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	2 cut(s)	95, 338
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	2 cut(s)	159, 510
HindII	GTYRAC	2 cut(s)	159, 510
HinfI	GANTC	2 cut(s)	572, 611
HpaII	CCGG	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	159, 510
Hpy188I	TCNGA	7 cut(s)	42, 317, 494, 565, 577, 604, 616
Hpy188III	TCNNGA	2 cut(s)	110, 353
Hpy8I	GTNNAC	2 cut(s)	159, 510
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	433, 461
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	204, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 346
HpyF3I	CTNAG	7 cut(s)	302, 485, 530, 562, 574, 601, 613
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	138
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	170, 521
MaeII	ACGT	1 cut(s)	377
MboII	GAAGA	2 cut(s)	29, 155
MluCI	AATT	5 cut(s)	68, 121, 240, 321, 364
MlyI	GAGTC	2 cut(s)	566, 605
MmeI	TCCRAC	6 cut(s)	168, 270, 360, 431, 453, 519
MseI	TTAA	9 cut(s)	29, 119, 125, 243, 284, 362, 368, 390, 468
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	417, 505
MvaI	CCWGG	2 cut(s)	417, 505
MwoI	GCNNNNNNNGC	2 cut(s)	103, 346
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	8, 96, 339
PceI	AGGCCT	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	2 cut(s)	566, 605
PpsI	GAGTC	2 cut(s)	566, 605
Psp1406I	AACGTT	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	415, 503
PspGI	CCWGG	2 cut(s)	415, 503
PspN4I	GGNNCC	3 cut(s)	8, 96, 339
PspPI	GGNCC	2 cut(s)	253, 436
SalI	GTCGAC	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	9 cut(s)	29, 119, 125, 243, 284, 362, 368, 390, 468
SatI	GCNGC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	253, 436
SchI	GAGTC	2 cut(s)	566, 605
ScrFI	CCNGG	2 cut(s)	417, 505
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	2 cut(s)	253, 436
Sse9I	AATT	5 cut(s)	68, 121, 240, 321, 364
SseBI	AGGCCT	1 cut(s)	483
SspMI	CTAG	2 cut(s)	170, 521
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	415, 503
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	433, 461
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	3 cut(s)	158, 258, 441
TasI	AATT	5 cut(s)	68, 121, 240, 321, 364
Tru1I	TTAA	9 cut(s)	29, 119, 125, 243, 284, 362, 368, 390, 468
Tru9I	TTAA	9 cut(s)	29, 119, 125, 243, 284, 362, 368, 390, 468
TseI	GCWGC	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	253, 436
XapI	RAATTY	3 cut(s)	68, 121, 364
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	2 cut(s)	170, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.