pycom07g21920

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017724
Physical Location & Seq
Reverse (-)
23406408 .. 23407136
729 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21920.1

Sequence Viewer

Length: 414 bp
ATGTCTGGCTGCTCCAGTCTTGGGATGTTTCCAGAGATTTCAGAAGGTATGGAGGGGTTAGAAGAGCTTGATTTATCCAAGTCAAGAATTAAAGAACTGCCCCTGTCAATTAATAATCTCACGGGTCTTGAGATGTTTCCAGAGACTTCAGAAGGTATGGACGAGTTAGAAGAGCTTGATTTATCCAGGTTAATAATTGAAGAACTGCCCCTGTCAATTAATAATCTCACGGGGTTGAGTCGTTTCAACCTAAAAGATTGCAAGGAACTGAAGAGTCTTCCAAGCTGCATTCATATGAAATGTTTGAAAACCTTTAATCTTTATGGTTGCTCCAGTCTTGAGATGTTTCCATCGATTTCAGAAGGTATTGAGGGGTTAGAAGAGCTTGATTTATCCGGCCGGGTCAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

138

Amino Acids

15.22

Weight (kDa)

4.42

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 43 - 114 2.6e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 132, 290
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 3 cut(s) 200, 247, 307
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 4 cut(s) 67, 175, 285, 385
AluI AGCT 4 cut(s) 67, 175, 285, 385
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 2 cut(s) 9, 285
AseI ATTAAT 2 cut(s) 111, 219
AsuC2I CCSGG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 137
BisI GCNGC 2 cut(s) 10, 286
BlsI GCNGC 2 cut(s) 11, 287
Bme1390I CCNGG 2 cut(s) 187, 401
BmrFI CCNGG 2 cut(s) 187, 401
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 149, 359
BpuMI CCSGG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 2 cut(s) 15, 333
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 353
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 15, 333
BseX3I CGGCCG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 396, 400
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 399
BspANI GGCC 1 cut(s) 399
BspDI ATCGAT 1 cut(s) 353
BspQI GCTCTTC 3 cut(s) 57, 165, 375
BsrI ACTGG 2 cut(s) 15, 333
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 4 cut(s) 57, 165, 266, 375
BstF5I GGATG 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 137
BstMCI CGRYCG 1 cut(s) 400
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 185, 399
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 269
BstZI CGGCCG 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 353
BsuRI GGCC 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 1 cut(s) 30
ClaI ATCGAT 1 cut(s) 353
CviJI RGCY 6 cut(s) 9, 67, 175, 285, 385, 399
CviKI_1 RGCY 6 cut(s) 9, 67, 175, 285, 385, 399
EaeI YGGCCR 1 cut(s) 397
EagI CGGCCG 1 cut(s) 397
Eam1104I CTCTTC 4 cut(s) 57, 165, 266, 375
EarI CTCTTC 4 cut(s) 57, 165, 266, 375
EclXI CGGCCG 1 cut(s) 397
Eco52I CGGCCG 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 132, 290
EcoRII CCWGG 1 cut(s) 185
FaiI YATR 5 cut(s) 50, 158, 294, 296, 324
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 10, 286
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 10, 286
GluI GCNGC 2 cut(s) 10, 286
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 399
HapII CCGG 2 cut(s) 396, 400
HinfI GANTC 2 cut(s) 238, 274
HpaII CCGG 2 cut(s) 396, 400
Hpy188I TCNGA 3 cut(s) 43, 151, 361
Hpy188III TCNNGA 5 cut(s) 32, 84, 128, 140, 338
HpyAV CCTTC 3 cut(s) 38, 146, 356
HpyCH4V TGCA 2 cut(s) 261, 288
LguI GCTCTTC 3 cut(s) 57, 165, 375
LmnI GCTCC 2 cut(s) 17, 335
LpnPI CCDG 9 cut(s) 28, 45, 116, 153, 172, 199, 224, 346, 409
Lsp1109I GCAGC 1 cut(s) 272
MboII GAAGA 6 cut(s) 74, 182, 212, 269, 283, 392
MluCI AATT 5 cut(s) 87, 108, 195, 216, 409
MlyI GAGTC 2 cut(s) 247, 283
MnlI CCTC 2 cut(s) 46, 364
MseI TTAA 6 cut(s) 90, 111, 191, 219, 315, 412
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 2 cut(s) 396, 400
MspR9I CCNGG 2 cut(s) 187, 401
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 1 cut(s) 187
NciI CCSGG 1 cut(s) 401
NdeI CATATG 1 cut(s) 294
PciSI GCTCTTC 3 cut(s) 57, 165, 375
PctI GAATGC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 11, 287
PleI GAGTC 2 cut(s) 246, 282
PpsI GAGTC 2 cut(s) 246, 282
PshBI ATTAAT 2 cut(s) 111, 219
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 293
SapI GCTCTTC 3 cut(s) 57, 165, 375
SaqAI TTAA 6 cut(s) 90, 111, 191, 219, 315, 412
SatI GCNGC 2 cut(s) 10, 286
SchI GAGTC 2 cut(s) 247, 283
ScrFI CCNGG 2 cut(s) 187, 401
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 128, 338
SmoI CTYRAG 2 cut(s) 128, 338
Sse9I AATT 5 cut(s) 87, 108, 195, 216, 409
StyD4I CCNGG 2 cut(s) 185, 399
TaqI TCGA 1 cut(s) 353
TasI AATT 5 cut(s) 87, 108, 195, 216, 409
Tru1I TTAA 6 cut(s) 90, 111, 191, 219, 315, 412
Tru9I TTAA 6 cut(s) 90, 111, 191, 219, 315, 412
TseI GCWGC 2 cut(s) 9, 285
TspDTI ATGAA 2 cut(s) 281, 311
VspI ATTAAT 2 cut(s) 111, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.