Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0017724

Physical Location & Seq

Genomic Coordinates Reverse (-)

2529606 .. 2531829

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1020500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATCTTAGTTTCTCAAAATTAATCAGGACCCCATATTTCACAGAAATTCAGAATCTTGAGAGGTTAGTACTTGAAGGTTGTTATGATTTAATTGAGATCCACCCATCCATTGCAGCTCTCAAAAGGCTTAAGATTTTGAACTTTAAGAATTGTATGAGTATGAAGAGTCTCCCAAGTGAGATAGCAATGGAGTCTCTTGAATTTCTGAGTCTCTCTCGATGTGTCAATCTGAAAAAGATTCCGGAGTTTGTTGGAGACATGAAAAATCTGTCACGTCTTATTTTAAGTGAGACTGCTATTAAGGAAATACCTCCATCAATTGGATGTCTGATTGGCCTTGTTGAACTACATCTAGATGGTTGTCAAAGTCTCTTGTGTGTTCCAAGTGTCATTTCTAATTGCAAGTCTCTTAAACTTCTCAATATGTTAGGGTGCTCAAAACTTAGCAAACTCCCCGAAAGCTTGGGAGTGATGGACTATTTGGAGGAACTTGATCTGAGTCGAACTGCATTAAAAGAGTTGCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

178

Amino Acids

19.78

Weight (kDa)

6.16

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	32 - 146	3.9e-12	Leucine-rich repeat region
LRR_13	PF23286	65 - 150	1.1e-10	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017724)

Species	Orthologous Gene IDs
malus_domestica	MD04G1035300.v1.1 MD05G1132000.v1.1 MD08G1230100.v1.1 MD10G1020500.v1.1
pyrus_communis	pycom07g21920 pycom10g02290 pycom420g00780
rosa_chinensis	RchiOBHm_Chr1g0322431 RchiOBHm_Chr6g0287571
rosa_samantha	Rh6CG303600 Rh6CG314200 Rh6DG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccIII	TCCGGA	1 cut(s)	244
AclWI	GGATC	2 cut(s)	12, 94
AcsI	RAATTY	2 cut(s)	48, 203
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	77, 142, 203, 347
AjiI	CACGTC	1 cut(s)	278
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	2 cut(s)	119, 465
AluI	AGCT	2 cut(s)	119, 465
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	7 cut(s)	176, 201, 218, 252, 287, 377, 414
AlwI	GGATC	2 cut(s)	12, 94
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	48, 203
AseI	ATTAAT	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	4 cut(s)	115, 325, 353, 469
BcoDI	GTCTC	7 cut(s)	176, 201, 218, 252, 287, 377, 414
BfaI	CTAG	1 cut(s)	356
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmcAI	AGTACT	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuEI	CTTGAG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	2 cut(s)	111, 195
BseAI	TCCGGA	1 cut(s)	244
BseGI	GGATG	2 cut(s)	107, 332
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	2 cut(s)	111, 195
BseMII	CTCAG	2 cut(s)	200, 491
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	7 cut(s)	176, 201, 218, 252, 287, 377, 414
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	4, 99, 496
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	201, 492
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	12, 94
BspTI	CTTAAG	1 cut(s)	131
BsrDI	GCAATG	2 cut(s)	111, 195
BssMI	GATC	3 cut(s)	4, 99, 496
Bst6I	CTCTTC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	8, 209, 446, 500
BstF5I	GGATG	2 cut(s)	107, 332
BstKTI	GATC	3 cut(s)	7, 102, 499
BstMAI	GTCTC	7 cut(s)	176, 201, 218, 252, 287, 377, 414
BstMBI	GATC	3 cut(s)	4, 99, 496
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	2 cut(s)	4, 99
BstYI	RGATCY	2 cut(s)	4, 99
BsuRI	GGCC	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	107, 332
Cfr13I	GGNCC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	4 cut(s)	119, 130, 339, 465
CviKI_1	RGCY	4 cut(s)	119, 130, 339, 465
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	4 cut(s)	8, 209, 446, 500
DpnI	GATC	3 cut(s)	6, 101, 498
DpnII	GATC	3 cut(s)	4, 99, 496
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	30
FaeI	CATG	1 cut(s)	265
FaiI	YATR	6 cut(s)	37, 87, 158, 164, 263, 428
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	94, 339
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	6 cut(s)	55, 169, 194, 211, 241, 502
HpaII	CCGG	1 cut(s)	245
Hpy188I	TCNGA	5 cut(s)	54, 210, 234, 333, 501
Hpy188III	TCNNGA	6 cut(s)	28, 59, 200, 219, 245, 356
HpyAV	CCTTC	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	116, 405, 512
HpyF3I	CTNAG	4 cut(s)	8, 209, 446, 500
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	4, 99, 496
LpnPI	CCDG	2 cut(s)	13, 258
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	3 cut(s)	6, 101, 498
MboI	GATC	3 cut(s)	4, 99, 496
MboII	GAAGA	1 cut(s)	178
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	2 cut(s)	4, 99
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	7 cut(s)	20, 48, 93, 151, 203, 321, 400
MlyI	GAGTC	4 cut(s)	178, 203, 220, 511
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	57, 324, 481
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	9 cut(s)	23, 92, 132, 147, 287, 303, 414, 515, 532
MslI	CAYNNNNRTG	1 cut(s)	357
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	321
NdeII	GATC	3 cut(s)	4, 99, 496
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	55, 241
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	4 cut(s)	177, 202, 219, 510
PpsI	GAGTC	4 cut(s)	177, 202, 219, 510
PpuMI	RGGWCCY	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	4, 99
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	9 cut(s)	23, 92, 132, 147, 287, 303, 414, 515, 532
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	4, 99, 496
Sau96I	GGNCC	1 cut(s)	30
ScaI	AGTACT	1 cut(s)	72
SchI	GAGTC	4 cut(s)	178, 203, 220, 511
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	6 cut(s)	68, 82, 121, 280, 316, 467
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	59, 131
SmoI	CTYRAG	2 cut(s)	59, 131
Sse9I	AATT	7 cut(s)	20, 48, 93, 151, 203, 321, 400
SspMI	CTAG	1 cut(s)	356
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	220, 505
TasI	AATT	7 cut(s)	20, 48, 93, 151, 203, 321, 400
TatI	WGTACW	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	55, 241
Tru1I	TTAA	9 cut(s)	23, 92, 132, 147, 287, 303, 414, 515, 532
Tru9I	TTAA	9 cut(s)	23, 92, 132, 147, 287, 303, 414, 515, 532
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	179, 278
Van91I	CCANNNNNTGG	1 cut(s)	323
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	30
VspI	ATTAAT	1 cut(s)	23
XapI	RAATTY	2 cut(s)	48, 203
XbaI	TCTAGA	1 cut(s)	355
XspI	CTAG	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.