Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017724

Physical Location & Seq

Genomic Coordinates Reverse (-)

2563327 .. 2563913

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATTATCTTGTACATTTCAATCTTAATGGCTGCTCAAATGTGAAAACGATTCCAGAATTTGGGGAGCAGATGAAGAATTTAGACTTCCTCGTGGTAAACAACACTGCGATCGAGAAGATACCTTCATCAATTGGACATGCGGTTGGCCTTAAGTATTTGTTTCTACGGAATTGCAAAAATCTCTTGTACCTTCCAAGGGCTATTTGTAATTTGAAGTCTCTTGAAGAGCTCGATGTGATTGGATGCTCAAAGATTGACAAACTCCCAGGAGACATGGATCACTTATGGTGGCTTAGAGTGGGACCCACTATGACAAAGCCGCTTGTGGGAGGGGGATATCCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

117

Amino Acids

13.06

Weight (kDa)

8.37

Isoelectric Point (pI)

22.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_13	PF23286	6 - 87	8e-08	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	13 - 101	4.9e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017724)

Species	Orthologous Gene IDs
malus_domestica	MD04G1035300.v1.1 MD05G1132000.v1.1 MD08G1230100.v1.1 MD10G1020500.v1.1
pyrus_communis	pycom07g21920 pycom10g02290 pycom420g00780
rosa_chinensis	RchiOBHm_Chr1g0322431 RchiOBHm_Chr6g0287571
rosa_samantha	Rh6CG303600 Rh6CG314200 Rh6DG297600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AciI	CCGC	2 cut(s)	143, 323
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	59, 79
AfaI	GTAC	2 cut(s)	15, 191
AfiI	CCNNNNNNNGG	3 cut(s)	62, 199, 329
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	22, 217, 227
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	225, 267
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	59, 79
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	225, 267
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	34, 323
BlsI	GCNGC	2 cut(s)	35, 324
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	306, 307
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	197, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 199, 329
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	197, 268
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	62, 199, 329
BseXI	GCAGC	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	62, 199, 329
BsmAI	GTCTC	2 cut(s)	225, 267
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	111, 280
BspACI	CCGC	2 cut(s)	143, 323
BspANI	GGCC	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	306, 307
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	222
BspTI	CTTAAG	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	197, 268
BssMI	GATC	2 cut(s)	111, 280
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	152
BstAUI	TGTACA	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	114, 283
BstMAI	GTCTC	2 cut(s)	225, 267
BstMBI	GATC	2 cut(s)	111, 280
BstMCI	CGRYCG	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	14, 190
CviAII	CATG	2 cut(s)	140, 277
CviJI	RGCY	6 cut(s)	33, 150, 203, 232, 295, 322
CviKI_1	RGCY	6 cut(s)	33, 150, 203, 232, 295, 322
CviQI	GTAC	2 cut(s)	14, 190
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	113, 282
DpnII	GATC	2 cut(s)	111, 280
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	143, 280
FaiI	YATR	4 cut(s)	141, 278, 289, 314
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	139, 276
Fnu4HI	GCNGC	2 cut(s)	34, 323
FokI	GGATG	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	34, 323
GluI	GCNGC	2 cut(s)	34, 323
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	143, 280
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	56, 115, 224
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	135, 203
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	143, 280
KflI	GGGWCCC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	111, 280
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	69, 255, 282
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	236
MalI	GATC	2 cut(s)	113, 282
MboI	GATC	2 cut(s)	111, 280
MboII	GAAGA	3 cut(s)	88, 130, 239
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	5 cut(s)	59, 79, 132, 172, 211
MnlI	CCTC	2 cut(s)	101, 326
MseI	TTAA	2 cut(s)	27, 153
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	111, 280
NlaIII	CATG	2 cut(s)	143, 280
NlaIV	GGNNCC	2 cut(s)	306, 307
NspI	RCATGY	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	35, 324
Ple19I	CGATCG	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	306, 307
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
PvuI	CGATCG	1 cut(s)	114
RsaI	GTAC	2 cut(s)	15, 191
RsaNI	GTAC	2 cut(s)	14, 190
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	27, 153
SatI	GCNGC	2 cut(s)	34, 323
Sau3AI	GATC	2 cut(s)	111, 280
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	3 cut(s)	127, 195, 234
SfaNI	GCATC	1 cut(s)	236
SinI	GGWCC	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	59, 79, 132, 172, 211
SsiI	CCGC	2 cut(s)	143, 323
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	197
TaqI	TCGA	2 cut(s)	114, 234
TasI	AATT	5 cut(s)	59, 79, 132, 172, 211
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	27, 153
Tru9I	TTAA	2 cut(s)	27, 153
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	89, 117
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	2 cut(s)	59, 79
XceI	RCATGY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.