CONTAINS InterPro DOMAIN s WD40 repeat-like (InterPro IPR011046), WD40 repeat, region (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like (InterPro IPR015943)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24710 |
| fragaria_vesca | FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 |
| malus_domestica | MD05G1154700.v1.1 MD10G1148800.v1.1 MD10G1149000.v1.1 |
| prunus_persica | Prupe.8G187800_v2.0.a1 |
| pyrus_communis | pycom05g14830 pycom10g12860 |
| rosa_chinensis | RchiOBHm_Chr6g0282501 |
| rosa_laevigata | RLG00000012889 |
| rosa_multiflora | Rmu_co8503373.1_g000001 Rmu_sc0005697.1_g000031 |
| rosa_roxburghii | Rroxscaffold_7G00186310 |
| rosa_rugosa | Rorug06G0146900 |
| rosa_samantha | Rh6AG260300 Rh6BG263400 Rh6CG262500 Rh6DG254300 |
| rosa_wichuraiana | Rw6G022500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 41 |
| Acc36I | ACCTGC | 2 cut(s) | 256, 4144 |
| AccB1I | GGYRCC | 5 cut(s) | 182, 954, 3817, 4156, 4174 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1011, 1328 |
| AccBSI | CCGCTC | 1 cut(s) | 318 |
| AccI | GTMKAC | 3 cut(s) | 1116, 1607, 2050 |
| AcoI | YGGCCR | 3 cut(s) | 23, 2889, 3201 |
| AcsI | RAATTY | 4 cut(s) | 512, 1623, 3050, 3543 |
| AcuI | CTGAAG | 3 cut(s) | 2906, 3669, 3762 |
| AcyI | GRCGYC | 2 cut(s) | 90, 183 |
| AfaI | GTAC | 6 cut(s) | 471, 585, 1420, 1505, 1731, 3691 |
| AflII | CTTAAG | 1 cut(s) | 3125 |
| AflIII | ACRYGT | 1 cut(s) | 1577 |
| AjiI | CACGTC | 2 cut(s) | 289, 3269 |
| AjnI | CCWGG | 7 cut(s) | 950, 2713, 2857, 3198, 3634, 3793, 4170 |
| AleI | CACNNNNGTG | 1 cut(s) | 963 |
| Alw21I | GWGCWC | 8 cut(s) | 147, 835, 970, 1065, 1792, 1828, 2692, 2920 |
| Alw26I | GTCTC | 4 cut(s) | 2584, 3294, 3570, 4091 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 329, 3149, 3464, 3521, 3911, 3938, 3965 |
| Ama87I | CYCGRG | 2 cut(s) | 3114, 3554 |
| ApoI | RAATTY | 4 cut(s) | 512, 1623, 3050, 3543 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 243, 2031, 2847, 3546 |
| AspLEI | GCGC | 4 cut(s) | 185, 294, 2142, 3844 |
| AspS9I | GGNCC | 9 cut(s) | 2375, 2412, 2627, 3883, 3896, 3991, 4018, 4045, 4072 |
| AsuC2I | CCSGG | 4 cut(s) | 1802, 3555, 3556, 3609 |
| AsuHPI | GGTGA | 4 cut(s) | 73, 145, 1368, 2360 |
| AvaI | CYCGRG | 2 cut(s) | 3114, 3554 |
| AvaII | GGWCC | 1 cut(s) | 2375 |
| BaeGI | GKGCMC | 2 cut(s) | 3820, 3873 |
| BalI | TGGCCA | 2 cut(s) | 2891, 3203 |
| BamHI | GGATCC | 2 cut(s) | 638, 2718 |
| BanI | GGYRCC | 5 cut(s) | 182, 954, 3817, 4156, 4174 |
| BanII | GRGCYC | 5 cut(s) | 147, 1065, 2335, 2920, 3616 |
| BauI | CACGAG | 3 cut(s) | 750, 758, 963 |
| BbsI | GAAGAC | 1 cut(s) | 403 |
| Bbv12I | GWGCWC | 8 cut(s) | 147, 835, 970, 1065, 1792, 1828, 2692, 2920 |
| BbvCI | CCTCAGC | 4 cut(s) | 330, 1989, 2058, 3348 |
| BceAI | ACGGC | 7 cut(s) | 447, 1036, 3239, 3547, 3628, 4124, 4170 |
| BciT130I | CCWGG | 7 cut(s) | 952, 2715, 2859, 3200, 3636, 3795, 4172 |
| BciVI | GTATCC | 2 cut(s) | 1567, 3325 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcnI | CCSGG | 4 cut(s) | 1802, 3555, 3556, 3609 |
| BcoDI | GTCTC | 4 cut(s) | 2584, 3294, 3570, 4091 |
| BfaI | CTAG | 7 cut(s) | 522, 816, 1601, 2496, 2633, 2822, 4217 |
| BfmI | CTRYAG | 9 cut(s) | 1215, 1674, 1680, 1719, 1782, 2423, 3141, 3288, 3626 |
| BfoI | RGCGCY | 2 cut(s) | 186, 3845 |
| BfrI | CTTAAG | 1 cut(s) | 3125 |
| BfuAI | ACCTGC | 2 cut(s) | 256, 4144 |
| BfuI | GTATCC | 2 cut(s) | 1567, 3325 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2626 |
| BglII | AGATCT | 3 cut(s) | 524, 1778, 1976 |
| BlpI | GCTNAGC | 1 cut(s) | 2340 |
| BmcAI | AGTACT | 1 cut(s) | 585 |
| Bme18I | GGWCC | 1 cut(s) | 2375 |
| BmeT110I | CYCGRG | 2 cut(s) | 3114, 3554 |
| BmgBI | CACGTC | 2 cut(s) | 289, 3269 |
| BmgT120I | GGNCC | 9 cut(s) | 2375, 2412, 2627, 3883, 3896, 3991, 4018, 4045, 4072 |
| BmrI | ACTGGG | 1 cut(s) | 4057 |
| BmuI | ACTGGG | 1 cut(s) | 4057 |
| BpiI | GAAGAC | 1 cut(s) | 403 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3926, 3958 |
| BpmI | CTGGAG | 3 cut(s) | 2280, 3509, 3753 |
| Bpu10I | CCTNAGC | 6 cut(s) | 330, 1364, 1989, 2058, 2705, 3348 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2340 |
| BpuEI | CTTGAG | 2 cut(s) | 2376, 3822 |
| BpuMI | CCSGG | 4 cut(s) | 1802, 3555, 3556, 3609 |
| BsaHI | GRCGYC | 2 cut(s) | 90, 183 |
| BsaI | GGTCTC | 2 cut(s) | 2584, 4091 |
| BsaJI | CCNNGG | 9 cut(s) | 71, 204, 2713, 2714, 3037, 3554, 3608, 3793, 4170 |
| BsaWI | WCCGGW | 1 cut(s) | 4120 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 243, 273, 3308, 3338, 3774, 3804, 4183, 4213 |
| Bse1I | ACTGG | 6 cut(s) | 1165, 1752, 2191, 3100, 3340, 4063 |
| BseBI | CCWGG | 7 cut(s) | 952, 2715, 2859, 3200, 3636, 3795, 4172 |
| BseDI | CCNNGG | 9 cut(s) | 71, 204, 2713, 2714, 3037, 3554, 3608, 3793, 4170 |
| BseMII | CTCAG | 9 cut(s) | 321, 1467, 1980, 2072, 2331, 2399, 2595, 3339, 3629 |
| BseNI | ACTGG | 6 cut(s) | 1165, 1752, 2191, 3100, 3340, 4063 |
| BseRI | GAGGAG | 2 cut(s) | 1836, 3567 |
| BseSI | GKGCMC | 2 cut(s) | 3820, 3873 |
| BseX3I | CGGCCG | 1 cut(s) | 23 |
| BseYI | CCCAGC | 3 cut(s) | 152, 837, 1928 |
| BsgI | GTGCAG | 4 cut(s) | 750, 876, 1023, 1980 |
| Bsh1285I | CGRYCG | 1 cut(s) | 26 |
| BshNI | GGYRCC | 5 cut(s) | 182, 954, 3817, 4156, 4174 |
| BsiEI | CGRYCG | 1 cut(s) | 26 |
| BsiHKAI | GWGCWC | 8 cut(s) | 147, 835, 970, 1065, 1792, 1828, 2692, 2920 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3114, 3554 |
| BsiSI | CCGG | 5 cut(s) | 22, 1802, 3555, 3608, 4121 |
| BslFI | GGGAC | 6 cut(s) | 893, 1598, 2522, 2966, 3776, 4127 |
| BsmAI | GTCTC | 4 cut(s) | 2584, 3294, 3570, 4091 |
| BsmBI | CGTCTC | 1 cut(s) | 3570 |
| BsmFI | GGGAC | 6 cut(s) | 893, 1598, 2522, 2966, 3776, 4127 |
| BsmI | GAATGC | 3 cut(s) | 17, 1933, 3345 |
| Bso31I | GGTCTC | 2 cut(s) | 2584, 4091 |
| BsoBI | CYCGRG | 2 cut(s) | 3114, 3554 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2340 |
| Bsp19I | CCATGG | 1 cut(s) | 71 |
| BspCNI | CTCAG | 9 cut(s) | 322, 1466, 1981, 2071, 2332, 2400, 2594, 3340, 3628 |
| BspHI | TCATGA | 2 cut(s) | 2797, 3172 |
| BspMAI | CTGCAG | 6 cut(s) | 1678, 1684, 1723, 3145, 3292, 3630 |
| BspMI | ACCTGC | 2 cut(s) | 256, 4144 |
| BspQI | GCTCTTC | 1 cut(s) | 2925 |
| BspT107I | GGYRCC | 5 cut(s) | 182, 954, 3817, 4156, 4174 |
| BspTI | CTTAAG | 1 cut(s) | 3125 |
| BspTNI | GGTCTC | 2 cut(s) | 2584, 4091 |
| BsrBI | CCGCTC | 1 cut(s) | 318 |
| BsrI | ACTGG | 6 cut(s) | 1165, 1752, 2191, 3100, 3340, 4063 |
| BssECI | CCNNGG | 9 cut(s) | 71, 204, 2713, 2714, 3037, 3554, 3608, 3793, 4170 |
| BssNAI | GTATAC | 1 cut(s) | 1117 |
| BssNI | GRCGYC | 2 cut(s) | 90, 183 |
| BssSI | CACGAG | 3 cut(s) | 750, 758, 963 |
| BssT1I | CCWWGG | 2 cut(s) | 71, 3037 |
| Bst1107I | GTATAC | 1 cut(s) | 1117 |
| Bst2BI | CACGAG | 3 cut(s) | 750, 758, 963 |
| Bst2UI | CCWGG | 7 cut(s) | 952, 2715, 2859, 3200, 3636, 3795, 4172 |
| Bst6I | CTCTTC | 1 cut(s) | 2925 |
| BstACI | GRCGYC | 2 cut(s) | 90, 183 |
| BstAFI | CTTAAG | 1 cut(s) | 3125 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1691, 2363, 2759, 3281, 3521 |
| BstC8I | GCNNGC | 9 cut(s) | 201, 934, 1792, 1814, 2144, 2454, 3345, 3641, 3921 |
| BstDSI | CCRYGG | 1 cut(s) | 71 |
| BstEII | GGTNACC | 1 cut(s) | 79 |
| BstH2I | RGCGCY | 2 cut(s) | 186, 3845 |
| BstHHI | GCGC | 4 cut(s) | 185, 294, 2142, 3844 |
| BstMAI | GTCTC | 4 cut(s) | 2584, 3294, 3570, 4091 |
| BstMCI | CGRYCG | 1 cut(s) | 26 |
| BstNI | CCWGG | 7 cut(s) | 952, 2715, 2859, 3200, 3636, 3795, 4172 |
| BstNSI | RCATGY | 2 cut(s) | 1581, 2456 |
| BstPI | GGTNACC | 1 cut(s) | 79 |
| BstSFI | CTRYAG | 9 cut(s) | 1215, 1674, 1680, 1719, 1782, 2423, 3141, 3288, 3626 |
| BstSLI | GKGCMC | 2 cut(s) | 3820, 3873 |
| BstV2I | GAAGAC | 1 cut(s) | 403 |
| BstX2I | RGATCY | 6 cut(s) | 524, 638, 1778, 1976, 2718, 3070 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 439, 3374 |
| BstYI | RGATCY | 6 cut(s) | 524, 638, 1778, 1976, 2718, 3070 |
| BstZ17I | GTATAC | 1 cut(s) | 1117 |
| BstZI | CGGCCG | 1 cut(s) | 23 |
| BsuI | GTATCC | 2 cut(s) | 1567, 3325 |
| BtgI | CCRYGG | 1 cut(s) | 71 |
| BtgZI | GCGATG | 1 cut(s) | 3900 |
| BtrI | CACGTC | 2 cut(s) | 289, 3269 |
| BtsI | GCAGTG | 4 cut(s) | 1558, 1801, 2908, 3623 |
| BtsIMutI | CAGTG | 8 cut(s) | 946, 1558, 1801, 2405, 2589, 2908, 2930, 3623 |
| BveI | ACCTGC | 2 cut(s) | 256, 4144 |
| Cac8I | GCNNGC | 9 cut(s) | 201, 934, 1792, 1814, 2144, 2454, 3345, 3641, 3921 |
| CaiI | CAGNNNCTG | 7 cut(s) | 329, 3149, 3464, 3521, 3911, 3938, 3965 |
| CciI | TCATGA | 2 cut(s) | 2797, 3172 |
| CfoI | GCGC | 4 cut(s) | 185, 294, 2142, 3844 |
| Cfr13I | GGNCC | 9 cut(s) | 2375, 2412, 2627, 3883, 3896, 3991, 4018, 4045, 4072 |
| Cfr9I | CCCGGG | 1 cut(s) | 3554 |
| CseI | GACGC | 1 cut(s) | 98 |
| Csp6I | GTAC | 6 cut(s) | 470, 584, 1419, 1504, 1730, 3690 |
| CviQI | GTAC | 6 cut(s) | 470, 584, 1419, 1504, 1730, 3690 |
| DinI | GGCGCC | 1 cut(s) | 184 |
| DraI | TTTAAA | 1 cut(s) | 777 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 41 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 41 |
| EaeI | YGGCCR | 3 cut(s) | 23, 2889, 3201 |
| EagI | CGGCCG | 1 cut(s) | 23 |
| Eam1104I | CTCTTC | 1 cut(s) | 2925 |
| EarI | CTCTTC | 1 cut(s) | 2925 |
| EciI | GGCGGA | 1 cut(s) | 3101 |
| Ecl136II | GAGCTC | 3 cut(s) | 145, 1063, 2918 |
| EclXI | CGGCCG | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 2 cut(s) | 71, 3037 |
| Eco24I | GRGCYC | 5 cut(s) | 147, 1065, 2335, 2920, 3616 |
| Eco31I | GGTCTC | 2 cut(s) | 2584, 4091 |
| Eco32I | GATATC | 1 cut(s) | 1498 |
| Eco47I | GGWCC | 1 cut(s) | 2375 |
| Eco52I | CGGCCG | 1 cut(s) | 23 |
| Eco53kI | GAGCTC | 3 cut(s) | 145, 1063, 2918 |
| Eco57I | CTGAAG | 3 cut(s) | 2906, 3669, 3762 |
| Eco88I | CYCGRG | 2 cut(s) | 3114, 3554 |
| Eco91I | GGTNACC | 1 cut(s) | 79 |
| EcoICRI | GAGCTC | 3 cut(s) | 145, 1063, 2918 |
| EcoO109I | RGGNCCY | 6 cut(s) | 2412, 3883, 3991, 4018, 4045, 4072 |
| EcoO65I | GGTNACC | 1 cut(s) | 79 |
| EcoRI | GAATTC | 2 cut(s) | 512, 1623 |
| EcoRII | CCWGG | 7 cut(s) | 950, 2713, 2857, 3198, 3634, 3793, 4170 |
| EcoRV | GATATC | 1 cut(s) | 1498 |
| EcoT14I | CCWWGG | 2 cut(s) | 71, 3037 |
| EcoT38I | GRGCYC | 5 cut(s) | 147, 1065, 2335, 2920, 3616 |
| EgeI | GGCGCC | 1 cut(s) | 184 |
| EheI | GGCGCC | 1 cut(s) | 184 |
| ErhI | CCWWGG | 2 cut(s) | 71, 3037 |
| Esp3I | CGTCTC | 1 cut(s) | 3570 |
| FaqI | GGGAC | 6 cut(s) | 893, 1598, 2522, 2966, 3776, 4127 |
| FauI | CCCGC | 2 cut(s) | 2151, 3685 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| FblI | GTMKAC | 3 cut(s) | 1116, 1607, 2050 |
| FriOI | GRGCYC | 5 cut(s) | 147, 1065, 2335, 2920, 3616 |
| FspBI | CTAG | 7 cut(s) | 522, 816, 1601, 2496, 2633, 2822, 4217 |
| GlaI | GCGC | 4 cut(s) | 184, 293, 2141, 3843 |
| GsaI | CCCAGC | 3 cut(s) | 156, 841, 1932 |
| GsuI | CTGGAG | 3 cut(s) | 2280, 3509, 3753 |
| HaeII | RGCGCY | 2 cut(s) | 186, 3845 |
| HapII | CCGG | 5 cut(s) | 22, 1802, 3555, 3608, 4121 |
| HgaI | GACGC | 1 cut(s) | 98 |
| HhaI | GCGC | 4 cut(s) | 185, 294, 2142, 3844 |
| Hin1I | GRCGYC | 2 cut(s) | 90, 183 |
| Hin6I | GCGC | 4 cut(s) | 183, 292, 2140, 3842 |
| HinP1I | GCGC | 4 cut(s) | 183, 292, 2140, 3842 |
| HincII | GTYRAC | 2 cut(s) | 3219, 3436 |
| HindII | GTYRAC | 2 cut(s) | 3219, 3436 |
| HindIII | AAGCTT | 2 cut(s) | 605, 3500 |
| HpaII | CCGG | 5 cut(s) | 22, 1802, 3555, 3608, 4121 |
| HphI | GGTGA | 4 cut(s) | 73, 145, 1368, 2360 |
| Hpy166II | GTNNAC | 8 cut(s) | 271, 1117, 1421, 1608, 2051, 3219, 3241, 3436 |
| Hpy8I | GTNNAC | 8 cut(s) | 271, 1117, 1421, 1608, 2051, 3219, 3241, 3436 |
| Hpy99I | CGWCG | 2 cut(s) | 92, 3454 |
| HpyAV | CCTTC | 8 cut(s) | 1353, 2366, 2469, 2538, 2939, 3313, 3693, 3887 |
| HpyCH4IV | ACGT | 6 cut(s) | 102, 288, 866, 1728, 2955, 3268 |
| HpySE526I | ACGT | 6 cut(s) | 102, 288, 866, 1728, 2955, 3268 |
| Hsp92I | GRCGYC | 2 cut(s) | 90, 183 |
| HspAI | GCGC | 4 cut(s) | 183, 292, 2140, 3842 |
| KasI | GGCGCC | 1 cut(s) | 182 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| LguI | GCTCTTC | 1 cut(s) | 2925 |
| MaeI | CTAG | 7 cut(s) | 522, 816, 1601, 2496, 2633, 2822, 4217 |
| MaeII | ACGT | 6 cut(s) | 102, 288, 866, 1728, 2955, 3268 |
| MbiI | CCGCTC | 1 cut(s) | 318 |
| MfeI | CAATTG | 1 cut(s) | 2235 |
| MflI | RGATCY | 6 cut(s) | 524, 638, 1778, 1976, 2718, 3070 |
| MlsI | TGGCCA | 2 cut(s) | 2891, 3203 |
| MluNI | TGGCCA | 2 cut(s) | 2891, 3203 |
| Mly113I | GGCGCC | 1 cut(s) | 183 |
| MlyI | GAGTC | 3 cut(s) | 1252, 1382, 1613 |
| MmeI | TCCRAC | 4 cut(s) | 171, 1329, 2627, 2856 |
| Mox20I | TGGCCA | 2 cut(s) | 2891, 3203 |
| MroXI | GAANNNNTTC | 4 cut(s) | 243, 2031, 2847, 3546 |
| MscI | TGGCCA | 2 cut(s) | 2891, 3203 |
| MslI | CAYNNNNRTG | 6 cut(s) | 789, 952, 963, 2799, 3366, 3372 |
| Msp20I | TGGCCA | 2 cut(s) | 2891, 3203 |
| MspA1I | CMGCKG | 6 cut(s) | 326, 1214, 1679, 1703, 3287, 3773 |
| MspCI | CTTAAG | 1 cut(s) | 3125 |
| MspI | CCGG | 5 cut(s) | 22, 1802, 3555, 3608, 4121 |
| MunI | CAATTG | 1 cut(s) | 2235 |
| Mva1269I | GAATGC | 3 cut(s) | 17, 1933, 3345 |
| MvaI | CCWGG | 7 cut(s) | 952, 2715, 2859, 3200, 3636, 3795, 4172 |
| NarI | GGCGCC | 1 cut(s) | 183 |
| NciI | CCSGG | 4 cut(s) | 1802, 3555, 3556, 3609 |
| NcoI | CCATGG | 1 cut(s) | 71 |
| NmeAIII | GCCGAG | 1 cut(s) | 229 |
| NmuCI | GTSAC | 4 cut(s) | 79, 1374, 1796, 2501 |
| NspI | RCATGY | 2 cut(s) | 1581, 2456 |
| OliI | CACNNNNGTG | 1 cut(s) | 963 |
| PaeI | GCATGC | 1 cut(s) | 2456 |
| PagI | TCATGA | 2 cut(s) | 2797, 3172 |
| PasI | CCCWGGG | 1 cut(s) | 2714 |
| PciI | ACATGT | 1 cut(s) | 1577 |
| PciSI | GCTCTTC | 1 cut(s) | 2925 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 207, 3449 |
| PctI | GAATGC | 3 cut(s) | 17, 1933, 3345 |
| PdmI | GAANNNNTTC | 4 cut(s) | 243, 2031, 2847, 3546 |
| PfeI | GAWTC | 9 cut(s) | 49, 212, 218, 746, 1001, 1436, 1544, 2513, 3707 |
| PflFI | GACNNNGTC | 1 cut(s) | 1802 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1011, 1328 |
| PleI | GAGTC | 3 cut(s) | 1251, 1381, 1612 |
| PluTI | GGCGCC | 1 cut(s) | 186 |
| PpsI | GAGTC | 3 cut(s) | 1251, 1381, 1612 |
| PscI | ACATGT | 1 cut(s) | 1577 |
| Psp124BI | GAGCTC | 3 cut(s) | 147, 1065, 2920 |
| Psp6I | CCWGG | 7 cut(s) | 950, 2713, 2857, 3198, 3634, 3793, 4170 |
| PspEI | GGTNACC | 1 cut(s) | 79 |
| PspFI | CCCAGC | 3 cut(s) | 152, 837, 1928 |
| PspGI | CCWGG | 7 cut(s) | 950, 2713, 2857, 3198, 3634, 3793, 4170 |
| PspPI | GGNCC | 9 cut(s) | 2375, 2412, 2627, 3883, 3896, 3991, 4018, 4045, 4072 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1272, 1304 |
| PstI | CTGCAG | 6 cut(s) | 1678, 1684, 1723, 3145, 3292, 3630 |
| PstNI | CAGNNNCTG | 7 cut(s) | 329, 3149, 3464, 3521, 3911, 3938, 3965 |
| PsuI | RGATCY | 6 cut(s) | 524, 638, 1778, 1976, 2718, 3070 |
| PsyI | GACNNNGTC | 1 cut(s) | 1802 |
| PvuII | CAGCTG | 6 cut(s) | 326, 1214, 1679, 1703, 3287, 3773 |
| RsaI | GTAC | 6 cut(s) | 471, 585, 1420, 1505, 1731, 3691 |
| RsaNI | GTAC | 6 cut(s) | 470, 584, 1419, 1504, 1730, 3690 |
| RseI | CAYNNNNRTG | 6 cut(s) | 789, 952, 963, 2799, 3366, 3372 |
| SacI | GAGCTC | 3 cut(s) | 147, 1065, 2920 |
| SapI | GCTCTTC | 1 cut(s) | 2925 |
| Sau96I | GGNCC | 9 cut(s) | 2375, 2412, 2627, 3883, 3896, 3991, 4018, 4045, 4072 |
| ScaI | AGTACT | 1 cut(s) | 585 |
| SchI | GAGTC | 3 cut(s) | 1252, 1382, 1613 |
| SfcI | CTRYAG | 9 cut(s) | 1215, 1674, 1680, 1719, 1782, 2423, 3141, 3288, 3626 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2626 |
| SfoI | GGCGCC | 1 cut(s) | 184 |
| SinI | GGWCC | 1 cut(s) | 2375 |
| SmaI | CCCGGG | 1 cut(s) | 3556 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 789, 952, 963, 2799, 3366, 3372 |
| SmlI | CTYRAG | 3 cut(s) | 2391, 3125, 3837 |
| SmoI | CTYRAG | 3 cut(s) | 2391, 3125, 3837 |
| SphI | GCATGC | 1 cut(s) | 2456 |
| SspDI | GGCGCC | 1 cut(s) | 182 |
| SspI | AATATT | 1 cut(s) | 1768 |
| SspMI | CTAG | 7 cut(s) | 522, 816, 1601, 2496, 2633, 2822, 4217 |
| SstI | GAGCTC | 3 cut(s) | 147, 1065, 2920 |
| StyI | CCWWGG | 2 cut(s) | 71, 3037 |
| TaiI | ACGT | 6 cut(s) | 105, 291, 869, 1731, 2958, 3271 |
| TaqI | TCGA | 5 cut(s) | 1246, 1621, 1652, 1846, 2486 |
| TatI | WGTACW | 2 cut(s) | 583, 1418 |
| TauI | GCSGC | 6 cut(s) | 907, 1700, 2620, 2741, 3086, 3901 |
| TfiI | GAWTC | 9 cut(s) | 49, 212, 218, 746, 1001, 1436, 1544, 2513, 3707 |
| TscAI | CASTG | 8 cut(s) | 946, 1558, 1801, 2412, 2589, 2908, 2930, 3630 |
| TseFI | GTSAC | 4 cut(s) | 79, 1374, 1796, 2501 |
| Tsp45I | GTSAC | 4 cut(s) | 79, 1374, 1796, 2501 |
| TspDTI | ATGAA | 5 cut(s) | 348, 1625, 2321, 3189, 3350 |
| TspGWI | ACGGA | 4 cut(s) | 97, 334, 1870, 2711 |
| TspMI | CCCGGG | 1 cut(s) | 3554 |
| TspRI | CASTG | 8 cut(s) | 946, 1558, 1801, 2412, 2589, 2908, 2930, 3630 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1802 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1011, 1328 |
| Vha464I | CTTAAG | 1 cut(s) | 3125 |
| VpaK11BI | GGWCC | 1 cut(s) | 2375 |
| XapI | RAATTY | 4 cut(s) | 512, 1623, 3050, 3543 |
| XbaI | TCTAGA | 3 cut(s) | 521, 815, 2495 |
| XceI | RCATGY | 2 cut(s) | 1581, 2456 |
| XmaI | CCCGGG | 1 cut(s) | 3554 |
| XmiI | GTMKAC | 3 cut(s) | 1116, 1607, 2050 |
| XmnI | GAANNNNTTC | 4 cut(s) | 243, 2031, 2847, 3546 |
| XspI | CTAG | 7 cut(s) | 522, 816, 1601, 2496, 2633, 2822, 4217 |
| ZrmI | AGTACT | 1 cut(s) | 585 |