Rh6BG263400

CONTAINS InterPro DOMAIN s WD40 repeat-like (InterPro IPR011046), WD40 repeat, region (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like (InterPro IPR015943)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008060
Physical Location & Seq
Reverse (-)
47862116 .. 47874516
12401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG263400.1

Sequence Viewer

Length: 4203 bp
ATGTTGCGGTTAAGAGCTTTCCGGCCGACGAACGACAAGATCGTCAAGATTCAGTTGCATCCAACGCATCCATGGCTCGTCACCGCCGATGCCTCCGATCACGTCTCCGTTTGGAATTGGGAACATCGCCAGGTGATTTACGAGCTCAAAGCTGGCGGCGTCGATCACCGGCGTTTGGTCGGAGCCAAGTTGGAGAAGCTCGCCGAGGGTGAAACAGACTCCAAGGGGAAACCCACTGAAGCCATTCGTGGAGGGAGTGTTAAGCAGGTAAACTTCTATGATGATGATGTGCGCTTTTGGCAACTTTGGCGTAACCGTTCTGCAGCTGCTGAGGCTCCATCGGCTGTCAATAATGTAGCATCACCATTTAATTCTCCCGCTCCAACAACCAAAGGAAGACACTTTCTTGTCATCTGTTGTGAAAACAAAGCCATATTTTTGGACTTGGTGACAATGCGTGGCCGTGATGTACCAAAGCAGGAACTTGACAACAAATCACTTCTCTGTATGGAATTTCTCTCTAGATCTGCTGTTGGTGATGTTCCTCTTGTTGCTTTTGGTGGATCAGATGGTGTTATTAGAGTACTTTCAATGATGACATGGAAGCTTGTAAGAAGATACACCGGAGGTCATAAAGGATCCATAGCTTGTTTGATGACATTTGTGTCCTCTTCTGGTGAGGCTCTTTTGGTCTCGGGGGGTAATGATGGTTTGCTTGTAGTTTGGAGTGCAGATCATGCTCAAGATTCAAGAGAACTCGTACCCAAGCTCAGTATAAAGGCACATGATGGTGGGGTTGTCGCTGTTGAACTTTCTAGAGTGATCGGAGCAGCTCCTCAGCTTATCTCAATTGGTGCAGATAAGACATTAGCTATATGGGACACAATTTCTTTTAAGGAGCTGCGGCGCATTAAACCTGTTCCAAAAATGGCTTGCCATAGTGTGGCATCCTGGTGCCACCCTCGTGCTCCAAACCTTGATATACTGACTTGCGTTAAAGATTCCAATATATGGGCCATCGAACACCCAACTTACTCTGCTCTGACAAGGCCGTTGTGTGAACTTTCTTCTCTGATCCCTCCACATGTGATCGCTCCCAATAAGAAAATTAGGGTTTACTGTATGGTTGCACATCCTTTACAGCCTCACCTGGTTGCTACTGGATCCAATGTCGGTATCATTATCAGTGAATTTGACCCCAGATCTCTTCCAGCTGTAGCTCCCCTACTAACACCATCAGGAAGTCGAGAGCATTCTGCTGTGTATGTTATTGAAAGGGAACTGAAGCTGCTGAACTTTCAGTTATCCCAGACAGCAAACCCAACTCTTGGAAATAATGCTTCTCTGTCGGAGACTGGAAGGCTTAGGGGAGATTCACTTGAAACATTACATGTCAAACAGATTAAGAAGCACATTAGTACGCCTGTTCCACATGATTCATATTCAATTCTTTCTGTAAGCAGTTCGGGAAAGTATCTTGCGATTGTGTGGCCAGATATCCCTTACTTCTCTATTTACAAAGTTAGTGACTGGTCCATCGTTGATTCAGGCAGTGCAAGGCTTTTGGCTTGGGATACATGCCGTGATAGATTTGCCATACTGGAATCGTCATTGCCTCCTCGAATTCCTGTAGTTCCGAAGGGCAGTTCATCGAGAAAAGCAAGAGAAGCAGCTGCAGCTGCAGCACAAGCTGCTGCTGCAGCTGCATCAGCTGCTTCTGCAGCCAATGTACAAGTTCGTATCTTGCTGGATGATGGCACCTCAAATATTTTAATGAGATCCATAGGTGGTCGCAGTGAACCGGTCATTGGCTTGCACGGAGGGGCACTTCTTGGTGTTGCATATCGAACATCTCGGAGAATTAGCCCAGTTGCTGCATCCGCTATTTCAACAATTCAATCCATGCCCCTGTCTGGATTTGGAAGTGCTGGTGTTTCTTCTTTTTCCACTTTTGACGATGGCTTTTCTTCTCACAAGTCTCCAGCTGAGGCTACACCCCAAAACTTTCAGCTATATAGTTGGGAAACTTTTCAACCTGTTGGTGGTCTACTTCCTCAGCCAGAATGGACAGCATGGGATCAAACGGTTGAGTATTGCGCTTTTGCATATCAGAAATACATCGTCATATCTTCTTTGCGCCCACAATATAGATACCTGGGCGATGTTGCAATTCCTTATGCTACTGGTGCTGTATGGCATCGGCGACAGTTGTTTGTTGTTACCCCAACCACCATCGAATGTGTTTTTGTGGATGCTGGAGTTGCAGCGATTGATATCGAAACAAAAAAGAGGAAAGAGGAGATGATGCTGAAGGAGGTACAAGCAAAAGCCCTTGCTGAGCATGGTGATTTGGCACTAATTGCGGTTGATGGTCCTCAATCTGCTACCCAGGAAAGGATAGCATTGAGGCCCCCAATGCTACAGGTGGTGCGATTAGCCTCATTTCAGCATGCTCCATCTGTGCCCCCATTCTTAACCTTGTCAAAGCAATCTAGAGTTGATGGGGATGATTCTGGGATTGCAGAAGAAAGAAAGGTTAACGAGGTGGCTGTTGGTGGTGGAGGGGTCTCAGTTGCAGTTACTCGTTTTCCATTAGAGCAGAAACGACCTGTAGGACCTCTGGTTGTGGTGGGTGTCAAAGATGGTGTTCTTTGGCTAATTGATAGATACATGAGTGCTCATGCCTTATCCCTCAGCCACCCTGGTATCCGCTGCCGGTGCCTTGCTGCTTATGGAGATGCTGTTAGTGCTGTGAAATGGGCAAGTAGGCTTGGTAGAGAACATCATGATGATTTAGCCCAGTTTTTGCTAGGGATGGGTTATGCTACTGAGGCACTTCATTTGCCTGGAATCTCTAAGAGGTTGGAGTTTGATTTGGCCATGCAGAGCAGTGATTTGAAAAGAGCTCTCCAGTGCCTTCTCACAATGAGCAACAGCAGGGACTTGGGGCAAGATAATTCAGGATTTGATTTGAAGGACATTCTTACTATAACAACTAAGAAAGAGAATATATTGGAAGCTGTCCAAGGAATAGTGAAATTTACAAAGGAGTTTTTGGATCTTATTGATGCCGCAGATGCTACTGGACAGGCTGAAATTGCTCGGGAGGCTCTGAAGAGGTTGGCTGCTGCGGCTTCTGTGAAAGGAGCTTTACAGGGTCATGAATTAAGAGGACAAGCTCTTCGGTTAGCCAATCATGGAGAGTTGACACGGCTTAGTAATTTGGTAAACAATTTAATATCCATTGGTGCTGGACGGGAAGCAGCATTCGCAGCTGCAGTTTTGGGAGACAATGCCCTCATGGAGAAGGCTTGGCAGGATACTGGAATGCTTGCTGAGGCTGTGCTTCATGCCCATGCTCATGGGAGACCAACATTGAAGAACTTGGTTCAGGCATGGAATAAAATGCTGCAAAAGGAGGTTGAGCACACCCCATTAGAAAAAACGGATGCTGCTGCTGCAGCATTTTTGGCTTCTCTGGAGGAACCCAAGCTTACAAGTTTAGCAGATGCTGCCAAGAAACCACCAATTGAAATTCTTCCTCCAGGGATGCCATCTCTTACAGTTGCTATGGCTGTTCAAAAGAAACCGCCTCCAGGGGCCCAGAATTCACAGCAGCAACCGGGCAAGCCACTGCTGTTAGAAGCAGCCCCTGCTACCACACCAGCCCCTTCAAGTGTGCCACAACAATCTGAATCAGGTGAACCAACTTCAGACAATAATCCCCCTGTTTCATCAACAGACAGTAATCCAGCTCCAGTTGCTTCTGGAGAAAGTGTCCCGGAAAATTCTAAGAATGATGTGGCACCATCAGACACGCCATCAGATGCGCCACCTCAAACCTCACAATCTGATGCCGCATCCCAAGGCCCACAACCTGATGCAACCCCATCCGAAGCGCCACAACCTGATGCCCCATCCCAGGCGCCGCTACCTGATGCCCCATCCCAGGCGCCGCTACCAGAAGCCCCATCCCAAGCGCCGCAACCAGAGGCCCCATCCCAGGCGCCGCTACCAGAAGCCCCATCCCAAGCGCCGCAACCAGAGGCCCCATCCCAGGCGCCGCAACCAGAGGCCTCATCTCAAGTGCCACAACCACAGGTCCCAATCCAGACACCACCATTACAAACCCAACCCCAGGTGCCAGCGATTCAGGAAACCAAACAAGCAAGATTGCCAATAAGTGATGATTGGCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

1400

Amino Acids

150.32

Weight (kDa)

6.54

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 181 - 296 2.9e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 182 - 312 7.2e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 189 - 293 3.3e-06 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 228 - 305 9e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 41, 664
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 9 cut(s) 954, 1757, 2718, 3805, 3925, 3952, 4006, 4060, 4141
AccB7I CCANNNNNTGG 3 cut(s) 943, 1011, 1328
AccBSI CCGCTC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 2047
AclWI GGATC 9 cut(s) 571, 633, 646, 1069, 1158, 1171, 1773, 2085, 3066
AcoI YGGCCR 4 cut(s) 23, 460, 1490, 2877
AcsI RAATTY 7 cut(s) 512, 1190, 1623, 3038, 3534, 3607, 3787
AcuI CTGAAG 5 cut(s) 258, 1304, 2330, 3134, 3696
AcyI GRCGYC 5 cut(s) 159, 3926, 3953, 4007, 4061
AfaI GTAC 6 cut(s) 471, 585, 762, 1420, 1731, 2319
AflIII ACRYGT 2 cut(s) 1084, 1390
AgeI ACCGGT 1 cut(s) 1801
AjiI CACGTC 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 1791, 1823
AleI CACNNNNGTG 1 cut(s) 963
Alw21I GWGCWC 5 cut(s) 147, 970, 2680, 2908, 3429
Alw26I GTCTC 7 cut(s) 109, 697, 1346, 1983, 2572, 3282, 3361
AlwI GGATC 9 cut(s) 571, 633, 646, 1069, 1158, 1171, 1773, 2085, 3066
AlwNI CAGNNNCTG 4 cut(s) 329, 1874, 3512, 3653
Ama87I CYCGRG 2 cut(s) 694, 3102
ApaI GGGCCC 1 cut(s) 3604
ApoI RAATTY 7 cut(s) 512, 1190, 1623, 3038, 3534, 3607, 3787
ArsI GACNNNNNNTTYG 2 cut(s) 3165, 3197
AsiGI ACCGGT 1 cut(s) 1801
Asp700I GAANNNNTTC 3 cut(s) 243, 2028, 3537
AsuC2I CCSGG 2 cut(s) 3624, 3782
AvaI CYCGRG 2 cut(s) 694, 3102
AvaII GGWCC 4 cut(s) 1533, 2372, 2615, 4102
BaeGI GKGCMC 3 cut(s) 1828, 2466, 3604
BaeI ACNNNNGTAYC 4 cut(s) 2659, 2689, 2692, 2722
BalI TGGCCA 2 cut(s) 1492, 2879
BamHI GGATCC 2 cut(s) 638, 1163
BanI GGYRCC 9 cut(s) 954, 1757, 2718, 3805, 3925, 3952, 4006, 4060, 4141
BanII GRGCYC 3 cut(s) 147, 2908, 3604
BauI CACGAG 1 cut(s) 963
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 5 cut(s) 147, 970, 2680, 2908, 3429
BbvCI CCTCAGC 6 cut(s) 330, 837, 1986, 2055, 2693, 3336
BceAI ACGGC 4 cut(s) 447, 1036, 1566, 3227
BciVI GTATCC 3 cut(s) 1567, 2717, 3313
BcnI CCSGG 2 cut(s) 3624, 3782
BcoDI GTCTC 7 cut(s) 109, 697, 1346, 1983, 2572, 3282, 3361
BfaI CTAG 4 cut(s) 522, 816, 2493, 2810
BfoI RGCGCY 7 cut(s) 3902, 3929, 3956, 3983, 4010, 4037, 4064
BfuAI ACCTGC 1 cut(s) 256
BfuI GTATCC 3 cut(s) 1567, 2717, 3313
BglII AGATCT 2 cut(s) 524, 1202
BlpI GCTNAGC 1 cut(s) 2337
BmcAI AGTACT 1 cut(s) 585
Bme18I GGWCC 4 cut(s) 1533, 2372, 2615, 4102
BmeT110I CYCGRG 2 cut(s) 694, 3102
BmgBI CACGTC 1 cut(s) 103
BmrI ACTGGG 2 cut(s) 1862, 2794
BmuI ACTGGG 2 cut(s) 1862, 2794
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 8 cut(s) 1965, 2277, 2894, 3500, 3528, 3579, 3741, 3789
Bpu10I CCTNAGC 7 cut(s) 330, 837, 1364, 1986, 2055, 2693, 3336
Bpu1102I GCTNAGC 1 cut(s) 2337
BpuEI CTTGAG 2 cut(s) 726, 4068
BpuMI CCSGG 2 cut(s) 3624, 3782
BsaBI GATNNNNATC 1 cut(s) 2273
BsaHI GRCGYC 5 cut(s) 159, 3926, 3953, 4007, 4061
BsaI GGTCTC 3 cut(s) 697, 2572, 3361
BsaWI WCCGGW 2 cut(s) 623, 1801
BsaXI ACNNNNNCTCC 6 cut(s) 243, 273, 2727, 2757, 3762, 3792
Bse118I RCCGGY 3 cut(s) 168, 1801, 2715
Bse3DI GCAATG 1 cut(s) 1610
Bse8I GATNNNNATC 1 cut(s) 2273
BseJI GATNNNNATC 1 cut(s) 2273
BseMI GCAATG 1 cut(s) 1610
BseRI GAGGAG 3 cut(s) 825, 1608, 2312
BseSI GKGCMC 3 cut(s) 1828, 2466, 3604
BseX3I CGGCCG 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 750, 876
Bsh1285I CGRYCG 1 cut(s) 26
BshNI GGYRCC 9 cut(s) 954, 1757, 2718, 3805, 3925, 3952, 4006, 4060, 4141
BshTI ACCGGT 1 cut(s) 1801
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 5 cut(s) 147, 970, 2680, 2908, 3429
BsiHKCI CYCGRG 2 cut(s) 694, 3102
BsiSI CCGG 7 cut(s) 22, 169, 624, 1802, 2716, 3623, 3782
BslFI GGGAC 4 cut(s) 893, 2954, 3764, 4088
BsmAI GTCTC 7 cut(s) 109, 697, 1346, 1983, 2572, 3282, 3361
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 4 cut(s) 893, 2954, 3764, 4088
BsmI GAATGC 3 cut(s) 1252, 3266, 3333
Bso31I GGTCTC 3 cut(s) 697, 2572, 3361
BsoBI CYCGRG 2 cut(s) 694, 3102
Bsp120I GGGCCC 1 cut(s) 3600
Bsp1286I GDGCHC 8 cut(s) 147, 970, 1828, 2466, 2680, 2908, 3429, 3604
Bsp1407I TGTACA 1 cut(s) 1729
Bsp1720I GCTNAGC 1 cut(s) 2337
Bsp19I CCATGG 1 cut(s) 71
BspHI TCATGA 2 cut(s) 2785, 3160
BspMAI CTGCAG 7 cut(s) 325, 1678, 1684, 1702, 1723, 3280, 3463
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 9 cut(s) 571, 633, 646, 1069, 1158, 1171, 1773, 2085, 3066
BspQI GCTCTTC 1 cut(s) 3186
BspT107I GGYRCC 9 cut(s) 954, 1757, 2718, 3805, 3925, 3952, 4006, 4060, 4141
BspTNI GGTCTC 3 cut(s) 697, 2572, 3361
BsrBI CCGCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 1610
BsrFI RCCGGY 3 cut(s) 168, 1801, 2715
BsrGI TGTACA 1 cut(s) 1729
BssAI RCCGGY 3 cut(s) 168, 1801, 2715
BssNI GRCGYC 5 cut(s) 159, 3926, 3953, 4007, 4061
BssSI CACGAG 1 cut(s) 963
BssT1I CCWWGG 4 cut(s) 71, 222, 3025, 3865
Bst2BI CACGAG 1 cut(s) 963
Bst4CI ACNGT 6 cut(s) 317, 1121, 2086, 2208, 3565, 3746
Bst6I CTCTTC 4 cut(s) 676, 1212, 3110, 3186
BstACI GRCGYC 5 cut(s) 159, 3926, 3953, 4007, 4061
BstAPI GCANNNNNTGC 6 cut(s) 737, 1691, 1712, 2360, 3512, 3653
BstAUI TGTACA 1 cut(s) 1729
BstC8I GCNNGC 8 cut(s) 154, 201, 934, 1814, 2451, 3333, 3629, 4146
BstDSI CCRYGG 1 cut(s) 71
BstH2I RGCGCY 7 cut(s) 3902, 3929, 3956, 3983, 4010, 4037, 4064
BstMAI GTCTC 7 cut(s) 109, 697, 1346, 1983, 2572, 3282, 3361
BstMCI CGRYCG 1 cut(s) 26
BstNSI RCATGY 4 cut(s) 1088, 1394, 1581, 2453
BstSLI GKGCMC 3 cut(s) 1828, 2466, 3604
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 6 cut(s) 524, 638, 1163, 1202, 1778, 3058
BstXI CCANNNNNNTGG 2 cut(s) 439, 3362
BstYI RGATCY 6 cut(s) 524, 638, 1163, 1202, 1778, 3058
BstZI CGGCCG 1 cut(s) 23
BsuI GTATCC 3 cut(s) 1567, 2717, 3313
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 2 cut(s) 110, 2175
BtrI CACGTC 1 cut(s) 103
BtsI GCAGTG 4 cut(s) 1558, 1801, 2896, 3632
BtsIMutI CAGTG 7 cut(s) 234, 1192, 1558, 1801, 2896, 2918, 3632
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 8 cut(s) 154, 201, 934, 1814, 2451, 3333, 3629, 4146
CaiI CAGNNNCTG 4 cut(s) 329, 1874, 3512, 3653
CciI TCATGA 2 cut(s) 2785, 3160
Cfr10I RCCGGY 3 cut(s) 168, 1801, 2715
CseI GACGC 1 cut(s) 148
CsiI ACCWGGT 1 cut(s) 1149
Csp6I GTAC 6 cut(s) 470, 584, 761, 1419, 1730, 2318
CspAI ACCGGT 1 cut(s) 1801
CviQI GTAC 6 cut(s) 470, 584, 761, 1419, 1730, 2318
DinI GGCGCC 4 cut(s) 3927, 3954, 4008, 4062
DrdI GACNNNNNNGTC 2 cut(s) 41, 664
DseDI GACNNNNNNGTC 2 cut(s) 41, 664
EaeI YGGCCR 4 cut(s) 23, 460, 1490, 2877
EagI CGGCCG 1 cut(s) 23
Eam1104I CTCTTC 4 cut(s) 676, 1212, 3110, 3186
EarI CTCTTC 4 cut(s) 676, 1212, 3110, 3186
Ecl136II GAGCTC 2 cut(s) 145, 2906
EclXI CGGCCG 1 cut(s) 23
Eco130I CCWWGG 4 cut(s) 71, 222, 3025, 3865
Eco147I AGGCCT 1 cut(s) 4076
Eco24I GRGCYC 3 cut(s) 147, 2908, 3604
Eco31I GGTCTC 3 cut(s) 697, 2572, 3361
Eco32I GATATC 2 cut(s) 1498, 2275
Eco47I GGWCC 4 cut(s) 1533, 2372, 2615, 4102
Eco52I CGGCCG 1 cut(s) 23
Eco53kI GAGCTC 2 cut(s) 145, 2906
Eco57I CTGAAG 5 cut(s) 258, 1304, 2330, 3134, 3696
Eco88I CYCGRG 2 cut(s) 694, 3102
EcoICRI GAGCTC 2 cut(s) 145, 2906
EcoO109I RGGNCCY 6 cut(s) 2409, 2615, 3600, 3994, 4048, 4102
EcoRI GAATTC 2 cut(s) 1623, 3607
EcoRV GATATC 2 cut(s) 1498, 2275
EcoT14I CCWWGG 4 cut(s) 71, 222, 3025, 3865
EcoT38I GRGCYC 3 cut(s) 147, 2908, 3604
EgeI GGCGCC 4 cut(s) 3927, 3954, 4008, 4062
EheI GGCGCC 4 cut(s) 3927, 3954, 4008, 4062
ErhI CCWWGG 4 cut(s) 71, 222, 3025, 3865
Esp3I CGTCTC 1 cut(s) 109
FaqI GGGAC 4 cut(s) 893, 2954, 3764, 4088
FauI CCCGC 1 cut(s) 385
FblI GTMKAC 1 cut(s) 2047
FriOI GRGCYC 3 cut(s) 147, 2908, 3604
FspBI CTAG 4 cut(s) 522, 816, 2493, 2810
GsuI CTGGAG 8 cut(s) 1965, 2277, 2894, 3500, 3528, 3579, 3741, 3789
HaeII RGCGCY 7 cut(s) 3902, 3929, 3956, 3983, 4010, 4037, 4064
HapII CCGG 7 cut(s) 22, 169, 624, 1802, 2716, 3623, 3782
HgaI GACGC 1 cut(s) 148
Hin1I GRCGYC 5 cut(s) 159, 3926, 3953, 4007, 4061
HincII GTYRAC 2 cut(s) 2539, 3207
HindII GTYRAC 2 cut(s) 2539, 3207
HindIII AAGCTT 2 cut(s) 605, 3491
HpaI GTTAAC 1 cut(s) 2539
HpaII CCGG 7 cut(s) 22, 169, 624, 1802, 2716, 3623, 3782
Hpy166II GTNNAC 9 cut(s) 271, 1061, 1117, 1799, 2048, 2539, 3207, 3229, 3704
Hpy8I GTNNAC 9 cut(s) 271, 1061, 1117, 1799, 2048, 2539, 3207, 3229, 3704
Hpy99I CGWCG 2 cut(s) 31, 164
HpyAV CCTTC 7 cut(s) 1353, 1633, 2305, 2927, 2968, 3301, 3681
HpyCH4III ACNGT 6 cut(s) 317, 1121, 2086, 2208, 3565, 3746
HpyCH4IV ACGT 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 5 cut(s) 159, 3926, 3953, 4007, 4061
KasI GGCGCC 4 cut(s) 3925, 3952, 4006, 4060
KspAI GTTAAC 1 cut(s) 2539
LguI GCTCTTC 1 cut(s) 3186
MabI ACCWGGT 1 cut(s) 1149
MaeI CTAG 4 cut(s) 522, 816, 2493, 2810
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 6 cut(s) 79, 311, 448, 1526, 2218, 2578
MbiI CCGCTC 1 cut(s) 380
MfeI CAATTG 2 cut(s) 849, 3528
MflI RGATCY 6 cut(s) 524, 638, 1163, 1202, 1778, 3058
MhlI GDGCHC 8 cut(s) 147, 970, 1828, 2466, 2680, 2908, 3429, 3604
MlsI TGGCCA 2 cut(s) 1492, 2879
MluNI TGGCCA 2 cut(s) 1492, 2879
Mly113I GGCGCC 4 cut(s) 3926, 3953, 4007, 4061
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 6 cut(s) 86, 160, 171, 407, 1329, 2844
Mox20I TGGCCA 2 cut(s) 1492, 2879
MroXI GAANNNNTTC 3 cut(s) 243, 2028, 3537
MscI TGGCCA 2 cut(s) 1492, 2879
MslI CAYNNNNRTG 6 cut(s) 789, 952, 963, 2787, 3354, 3360
Msp20I TGGCCA 2 cut(s) 1492, 2879
MspA1I CMGCKG 9 cut(s) 326, 1214, 1673, 1679, 1703, 1712, 1985, 2712, 3275
MspI CCGG 7 cut(s) 22, 169, 624, 1802, 2716, 3623, 3782
MunI CAATTG 2 cut(s) 849, 3528
Mva1269I GAATGC 3 cut(s) 1252, 3266, 3333
NarI GGCGCC 4 cut(s) 3926, 3953, 4007, 4061
NciI CCSGG 2 cut(s) 3624, 3782
NcoI CCATGG 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 79, 448, 1526
NspI RCATGY 4 cut(s) 1088, 1394, 1581, 2453
OliI CACNNNNGTG 1 cut(s) 963
PacI TTAATTAA 1 cut(s) 4201
PaeI GCATGC 1 cut(s) 2453
PagI TCATGA 2 cut(s) 2785, 3160
PceI AGGCCT 1 cut(s) 4076
PciI ACATGT 2 cut(s) 1084, 1390
PciSI GCTCTTC 1 cut(s) 3186
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 84
PctI GAATGC 3 cut(s) 1252, 3266, 3333
PdmI GAANNNNTTC 3 cut(s) 243, 2028, 3537
PflMI CCANNNNNTGG 3 cut(s) 943, 1011, 1328
PfoI TCCNGGA 1 cut(s) 3780
PinAI ACCGGT 1 cut(s) 1801
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 4 cut(s) 3929, 3956, 4010, 4064
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 2 cut(s) 2615, 4102
PscI ACATGT 2 cut(s) 1084, 1390
Psp124BI GAGCTC 2 cut(s) 147, 2908
Psp5II RGGWCCY 2 cut(s) 2615, 4102
PspOMI GGGCCC 1 cut(s) 3600
PspPPI RGGWCCY 2 cut(s) 2615, 4102
PstI CTGCAG 7 cut(s) 325, 1678, 1684, 1702, 1723, 3280, 3463
PstNI CAGNNNCTG 4 cut(s) 329, 1874, 3512, 3653
PsuI RGATCY 6 cut(s) 524, 638, 1163, 1202, 1778, 3058
PvuII CAGCTG 8 cut(s) 326, 1214, 1673, 1679, 1703, 1712, 1985, 3275
RsaI GTAC 6 cut(s) 471, 585, 762, 1420, 1731, 2319
RsaNI GTAC 6 cut(s) 470, 584, 761, 1419, 1730, 2318
RseI CAYNNNNRTG 6 cut(s) 789, 952, 963, 2787, 3354, 3360
SacI GAGCTC 2 cut(s) 147, 2908
SapI GCTCTTC 1 cut(s) 3186
ScaI AGTACT 1 cut(s) 585
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 8 cut(s) 147, 970, 1828, 2466, 2680, 2908, 3429, 3604
SexAI ACCWGGT 1 cut(s) 1149
SfoI GGCGCC 4 cut(s) 3927, 3954, 4008, 4062
SgrAI CRCCGGYG 1 cut(s) 168
SinI GGWCC 4 cut(s) 1533, 2372, 2615, 4102
SmiMI CAYNNNNRTG 6 cut(s) 789, 952, 963, 2787, 3354, 3360
SmlI CTYRAG 2 cut(s) 741, 4083
SmoI CTYRAG 2 cut(s) 741, 4083
SphI GCATGC 1 cut(s) 2453
SseBI AGGCCT 1 cut(s) 4076
SspDI GGCGCC 4 cut(s) 3925, 3952, 4006, 4060
SspI AATATT 1 cut(s) 1768
SspMI CTAG 4 cut(s) 522, 816, 2493, 2810
SstI GAGCTC 2 cut(s) 147, 2908
StuI AGGCCT 1 cut(s) 4076
StyI CCWWGG 4 cut(s) 71, 222, 3025, 3865
TaaI ACNGT 6 cut(s) 317, 1121, 2086, 2208, 3565, 3746
TaiI ACGT 1 cut(s) 105
TaqI TCGA 8 cut(s) 162, 1020, 1246, 1621, 1652, 1846, 2235, 2277
TatI WGTACW 2 cut(s) 583, 1729
TscAI CASTG 7 cut(s) 241, 1192, 1558, 1801, 2896, 2918, 3639
TseFI GTSAC 3 cut(s) 79, 448, 1526
Tsp45I GTSAC 3 cut(s) 79, 448, 1526
TspDTI ATGAA 6 cut(s) 1428, 1638, 2828, 3177, 3338, 3723
TspGWI ACGGA 3 cut(s) 97, 1833, 3461
TspRI CASTG 7 cut(s) 241, 1192, 1558, 1801, 2896, 2918, 3639
Van91I CCANNNNNTGG 3 cut(s) 943, 1011, 1328
VpaK11BI GGWCC 4 cut(s) 1533, 2372, 2615, 4102
XapI RAATTY 7 cut(s) 512, 1190, 1623, 3038, 3534, 3607, 3787
XbaI TCTAGA 3 cut(s) 521, 815, 2492
XceI RCATGY 4 cut(s) 1088, 1394, 1581, 2453
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 2047
XmnI GAANNNNTTC 3 cut(s) 243, 2028, 3537
XspI CTAG 4 cut(s) 522, 816, 2493, 2810
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.