Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8503373.1

Orthogroup ID

OG0008060

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3084

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8503373.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgttgcggttaagagctttccggccgacgaacgacaagatcgtcaagattcagttgcatccaacgcatccatggctcgtcaccgccgatgcctccgatcacgtctccgtttggaattgggaacatcgccaggtgatttacgagctcaaagctggcggtgtcgatcaccggcgtttggtcggagccaagttggagaagctcgccgagggtgaaacagactccaaggggaaacccactgaagccattcgtggagggagtgttaagcaggtaaacttctatgatgatgacgtgcgcttttggcaactttggcgtaaccgttctgcagctgctgaggctccatcggctgtcaataatgtagcatcaccatttaattctcccgctccaacaaccaaaggaagacactttcttgtcatctgttgtgaaaacaaagccatatttttggacttggtgacaatgcgtggccgtgatgtaccaaagcaggaacttgacaacaaatcacttctctgtatggaatttctctctagatctgctgttggtgatgttcctcttgttgcttttggtggatcagatggtgttattagagtactttcaatgatgacatggaagcttgtaagaagatacaccggaggtcataaaggatccatagcttgtttgatgacatttgtgtcctcttcgggtgaggctcttttggtctcggggggtaatgatggtttgcttgtagtttggagtgcagatcatgctcaagattcaagagaactcgtacccaagctcagtataaaggcacatgatggtggggttgtcgctgttgaactttctagagtgatcggagcagctcctcagcttatctcaattggtgcagataagacattagctatatgggacacaatttcttttaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

299

Amino Acids

32.78

Weight (kDa)

9.01

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24710
fragaria_vesca	FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560
malus_domestica	MD05G1154700.v1.1 MD10G1148800.v1.1 MD10G1149000.v1.1
prunus_persica	Prupe.8G187800_v2.0.a1
pyrus_communis	pycom05g14830 pycom10g12860
rosa_chinensis	RchiOBHm_Chr6g0282501
rosa_laevigata	RLG00000012889
rosa_multiflora	Rmu_co8503373.1_g000001 Rmu_sc0005697.1_g000031
rosa_roxburghii	Rroxscaffold_7G00186310
rosa_rugosa	Rorug06G0146900
rosa_samantha	Rh6AG260300 Rh6BG263400 Rh6CG262500 Rh6DG254300
rosa_wichuraiana	Rw6G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	41, 664
Acc36I	ACCTGC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	4 cut(s)	7, 84, 156, 378
AclWI	GGATC	3 cut(s)	571, 633, 646
AcoI	YGGCCR	2 cut(s)	23, 460
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	3 cut(s)	471, 585, 762
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	591, 750, 809
AjiI	CACGTC	2 cut(s)	103, 289
AjnI	CCWGG	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	109, 697
AlwI	GGATC	3 cut(s)	571, 633, 646
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	23, 460
ApeKI	GCWGC	3 cut(s)	323, 326, 830
ApoI	RAATTY	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	8 cut(s)	73, 145, 158, 221, 354, 460, 548, 689
AvaI	CYCGRG	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	2 cut(s)	330, 837
BbvI	GCAGC	3 cut(s)	313, 335, 842
BccI	CCATC	4 cut(s)	346, 563, 701, 782
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	109, 697
BfaI	CTAG	2 cut(s)	522, 816
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	524
BisI	GCNGC	3 cut(s)	324, 327, 831
BlsI	GCNGC	3 cut(s)	325, 328, 832
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	694
BmgBI	CACGTC	2 cut(s)	103, 289
BmiI	GGNNCC	3 cut(s)	184, 336, 640
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	4 cut(s)	67, 76, 79, 368
BpiI	GAAGAC	1 cut(s)	403
Bpu10I	CCTNAGC	2 cut(s)	330, 837
BpuEI	CTTGAG	1 cut(s)	726
BsaI	GGTCTC	1 cut(s)	697
BsaJI	CCNNGG	3 cut(s)	71, 204, 222
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	71, 204, 222
BseGI	GGATG	2 cut(s)	58, 67
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	321, 784, 851
BseRI	GAGGAG	1 cut(s)	825
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	313, 335, 842
BsgI	GTGCAG	2 cut(s)	750, 876
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	25, 462
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	3 cut(s)	22, 169, 624
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	109, 697
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	2 cut(s)	25, 462
Bso31I	GGTCTC	1 cut(s)	697
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	4 cut(s)	7, 84, 156, 378
BspANI	GGCC	2 cut(s)	25, 462
BspCNI	CTCAG	3 cut(s)	322, 783, 850
BspLI	GGNNCC	3 cut(s)	184, 336, 640
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	3 cut(s)	571, 633, 646
BspTNI	GGTCTC	1 cut(s)	697
BsrBI	CCGCTC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	71, 204, 222
BssMI	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
BssT1I	CCWWGG	2 cut(s)	71, 222
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	676
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	154, 201
BstDEI	CTNAG	3 cut(s)	330, 770, 837
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	58, 67
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	8 cut(s)	42, 100, 166, 527, 566, 641, 736, 825
BstMAI	GTCTC	2 cut(s)	109, 697
BstMBI	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 73, 298, 307, 332, 341, 737
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	313, 335, 842
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	2 cut(s)	524, 638
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	2 cut(s)	524, 638
BstZI	CGGCCG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	25, 462
BtgI	CCRYGG	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	110
BtrI	CACGTC	2 cut(s)	103, 289
BtsCI	GGATG	2 cut(s)	58, 67
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	154, 201
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	470, 584, 761
CviAII	CATG	4 cut(s)	72, 600, 737, 785
CviQI	GTAC	3 cut(s)	470, 584, 761
DdeI	CTNAG	3 cut(s)	330, 770, 837
DpnI	GATC	8 cut(s)	41, 99, 165, 526, 565, 640, 735, 824
DpnII	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
DrdI	GACNNNNNNGTC	2 cut(s)	41, 664
DseDI	GACNNNNNNGTC	2 cut(s)	41, 664
EaeI	YGGCCR	2 cut(s)	23, 460
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	145
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	71, 222
Eco24I	GRGCYC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	697
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	694
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	2 cut(s)	71, 222
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	71, 222
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	4 cut(s)	75, 603, 740, 788
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	4 cut(s)	71, 599, 736, 784
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	324, 327, 831
FokI	GGATG	2 cut(s)	45, 54
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	3 cut(s)	324, 327, 831
FspBI	CTAG	2 cut(s)	522, 816
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	324, 327, 831
HaeIII	GGCC	2 cut(s)	25, 462
HapII	CCGG	3 cut(s)	22, 169, 624
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	75, 603, 740, 788
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	3 cut(s)	49, 218, 746
HpaII	CCGG	3 cut(s)	22, 169, 624
HphI	GGTGA	8 cut(s)	73, 145, 158, 221, 354, 460, 548, 689
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	97, 182, 568, 827
Hpy188III	TCNNGA	5 cut(s)	46, 522, 743, 750, 816
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	102, 288
HpyCH4V	TGCA	4 cut(s)	58, 323, 731, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 73, 298, 307, 332, 341, 737
HpyF3I	CTNAG	3 cut(s)	330, 770, 837
HpySE526I	ACGT	2 cut(s)	102, 288
Hsp92II	CATG	4 cut(s)	75, 603, 740, 788
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
LmnI	GCTCC	5 cut(s)	182, 340, 385, 827, 838
LpnPI	CCDG	8 cut(s)	35, 116, 138, 143, 182, 251, 464, 637
Lsp1109I	GCAGC	3 cut(s)	313, 335, 842
LweI	GCATC	4 cut(s)	67, 76, 79, 368
MaeI	CTAG	2 cut(s)	522, 816
MaeII	ACGT	2 cut(s)	102, 288
MaeIII	GTNAC	3 cut(s)	79, 311, 448
MalI	GATC	8 cut(s)	41, 99, 165, 526, 565, 640, 735, 824
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
MboII	GAAGA	3 cut(s)	408, 627, 663
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	2 cut(s)	524, 638
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	5 cut(s)	115, 370, 512, 849, 885
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	4 cut(s)	86, 160, 171, 407
MnlI	CCTC	9 cut(s)	103, 199, 245, 325, 555, 620, 673, 679, 846
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	11, 261, 369, 894
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	22, 169, 624
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	7 cut(s)	64, 73, 298, 307, 332, 341, 737
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
NlaIII	CATG	4 cut(s)	75, 603, 740, 788
NlaIV	GGNNCC	3 cut(s)	184, 336, 640
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	79, 448
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 84
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	49, 746
PkrI	GCNGC	3 cut(s)	325, 328, 832
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	184, 336, 640
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	524, 638
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	471, 585, 762
RsaNI	GTAC	3 cut(s)	470, 584, 761
RseI	CAYNNNNRTG	1 cut(s)	789
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	11, 261, 369, 894
SatI	GCNGC	3 cut(s)	324, 327, 831
Sau3AI	GATC	8 cut(s)	39, 97, 163, 524, 563, 638, 733, 822
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	4 cut(s)	67, 76, 79, 368
SfcI	CTRYAG	1 cut(s)	321
SgrAI	CRCCGGYG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
Sse9I	AATT	5 cut(s)	115, 370, 512, 849, 885
SsiI	CCGC	4 cut(s)	7, 84, 156, 378
SspMI	CTAG	2 cut(s)	522, 816
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	71, 222
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	105, 291
TaqI	TCGA	1 cut(s)	162
TasI	AATT	5 cut(s)	115, 370, 512, 849, 885
TatI	WGTACW	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	49, 746
Tru1I	TTAA	4 cut(s)	11, 261, 369, 894
Tru9I	TTAA	4 cut(s)	11, 261, 369, 894
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	79, 448
TseI	GCWGC	3 cut(s)	323, 326, 830
Tsp45I	GTSAC	2 cut(s)	79, 448
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	512
XbaI	TCTAGA	2 cut(s)	521, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	522, 816
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.