Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008060

Physical Location & Seq

Genomic Coordinates Reverse (-)

23629666 .. 23630772

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1149000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTGCGGTTACGAGCATTCCGGCCGACGAATGAGAAGATCGTCAAGATTCAGTTGCATCCCACGCATCCATGGCTGGTCACCGCCGACGCCTCCGATCACGTCTCCGTTTGGAATTGGGAACGCCGTCAGGTGATTTACGAGCTCAAAGCTGGCAGCGTCGATCAGAGGCGTTTGGTTGGCGCCAAGTTGGAGAAGCTCGCGGAGGGGGAATCAGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

75

Amino Acids

8.53

Weight (kDa)

9.69

Isoelectric Point (pI)

19.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24710
fragaria_vesca	FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560 FvH4_2g17560
malus_domestica	MD05G1154700.v1.1 MD10G1148800.v1.1 MD10G1149000.v1.1
prunus_persica	Prupe.8G187800_v2.0.a1
pyrus_communis	pycom05g14830 pycom10g12860
rosa_chinensis	RchiOBHm_Chr6g0282501
rosa_laevigata	RLG00000012889
rosa_multiflora	Rmu_co8503373.1_g000001 Rmu_sc0005697.1_g000031
rosa_roxburghii	Rroxscaffold_7G00186310
rosa_rugosa	Rorug06G0146900
rosa_samantha	Rh6AG260300 Rh6BG263400 Rh6CG262500 Rh6DG254300
rosa_wichuraiana	Rw6G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	1 cut(s)	203
AciI	CCGC	3 cut(s)	7, 84, 203
AcoI	YGGCCR	1 cut(s)	23
AcyI	GRCGYC	2 cut(s)	90, 183
AfaI	GTAC	1 cut(s)	220
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	3 cut(s)	145, 152, 199
AluI	AGCT	3 cut(s)	145, 152, 199
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	73, 145
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	186
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	2 cut(s)	67, 76
BsaHI	GRCGYC	2 cut(s)	90, 183
BsaJI	CCNNGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	58, 67
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	39, 97, 163
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	3 cut(s)	7, 84, 203
BspANI	GGCC	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	3 cut(s)	39, 97, 163
BssNI	GRCGYC	2 cut(s)	90, 183
BssT1I	CCWWGG	1 cut(s)	71
BstACI	GRCGYC	2 cut(s)	90, 183
BstC8I	GCNNGC	2 cut(s)	154, 201
BstDSI	CCRYGG	1 cut(s)	71
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	58, 67
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	42, 100, 166
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	39, 97, 163
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 73
BstPI	GGTNACC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	168
BstZI	CGGCCG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	58, 67
Cac8I	GCNNGC	2 cut(s)	154, 201
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	2 cut(s)	98, 148
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	5 cut(s)	25, 76, 145, 152, 199
CviKI_1	RGCY	5 cut(s)	25, 76, 145, 152, 199
CviQI	GTAC	1 cut(s)	219
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	3 cut(s)	41, 99, 165
DpnII	GATC	3 cut(s)	39, 97, 163
EaeI	YGGCCR	1 cut(s)	23
EagI	CGGCCG	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	145
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	147
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	1 cut(s)	75
FaiI	YATR	1 cut(s)	73
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	45, 54
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	157
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	2 cut(s)	98, 148
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	90, 183
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	49, 212
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	2 cut(s)	73, 145
Hpy188I	TCNGA	2 cut(s)	97, 168
Hpy188III	TCNNGA	1 cut(s)	46
Hpy99I	CGWCG	3 cut(s)	31, 92, 164
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 73
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	2 cut(s)	90, 183
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	183
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	39, 97, 163
LpnPI	CCDG	5 cut(s)	35, 62, 116, 138, 201
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	67, 76
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	9, 79
MalI	GATC	3 cut(s)	41, 99, 165
MboI	GATC	3 cut(s)	39, 97, 163
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	115
Mly113I	GGCGCC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	103, 162, 199
MseI	TTAA	1 cut(s)	223
MspI	CCGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	17
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	64, 73
NarI	GGCGCC	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	3 cut(s)	39, 97, 163
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	49, 212
PkrI	GCNGC	1 cut(s)	158
PluTI	GGCGCC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	223
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	3 cut(s)	39, 97, 163
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	105, 135, 147, 154, 201, 220
SfaNI	GCATC	2 cut(s)	67, 76
SfoI	GGCGCC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	3 cut(s)	7, 84, 203
SspDI	GGCGCC	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	71
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	49, 212
Tru1I	TTAA	1 cut(s)	223
Tru9I	TTAA	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.