Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010242

Physical Location & Seq

Genomic Coordinates Forward (+)

29988727 .. 29995686

Gene Structure 6960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1170400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGAGAATTGCTGGTATTAATGGGACTGGCAGGCTTACATTTTTTGCATTCGTCGTGTGTAAAGCTGCTAATCTAACTGTGATTAACGTACAGTTAACCTTTTTAGATCAGAAATTCCTGTACGTGATCTATCGCCTGAACAGTCAAGACAGGCTAGGCTACAGGGTGTTGATGGAGGGCCCAAAGAGAGATGATTGGGTGCCCCGACTATTGATGTTTTTGGGCTCACACGATAGTGCGGGAGCAAGAATGTTACACGCACTCAAAGATCCGCTCAAAACCCTAGAAACCGCCAAACGCCGCCGAGAGGAGGTGAGAGAAGTCGCCGAGCTCTCCGCCTACCTTTTCTTCTTCTCTCACCTCACTTCCGCCGATCCGCGCTCAGAGATGGCAACGATGGTGCAGCAAGCCCCAGTTGCGAGTCTCGCTCCTACTGCCGACGTTGTTGGCAATGCCTTTGTTCTTCAGTACTACAATATCTTGGAACAATCTCCTGAGCTTGTTCATCGTTTTTACCAAGATATCAGTAAGCTTGGTCGTCCGGGAGATGATGGGATCATGAGCATTACAACCACCATGGAGGAAATCAACAAGAAGATACTTGATTATGGAGAGCTCAGTGCAAATATCAAAACTGTGGATGCTCAAGAATCTTACAATGGGGGAGTATTTGTTCTTGTCACTGGGTATTTAACTGGAAAGGACCTTTTAAGGAAGACATTTACTCAAAGTTTTTTCTTGGCGCCACAAGACGTAGGCTACTTTGTTTTGAACGATGTCTTTAGATATGTTGAAGATTCCAACCCTGAAAACGAGGACAATGGATTGGTTGTTGATGTTGAAGTTGAACCTCCTATTACTCCCAAACATGATGCTACTGCTTTGCAGGACAATCATGTCCCAGAGCCTGTGATTTCAGTGTCTGAGGACGTTGTCAAGGAGGAACTGTTCAAACCTTCTGAAAATGGAGTAGTTTCTGTTGAAGAGAAGGAAGTACCAGAACCTGAAGTCGTCAACGATATTCCTGATGATTCCCAAGTAGTGAATAAAGTTGAAGCTGAATCATTCATAAAAGTTGAAGCTGAATCCAAACCCAAAGTTGAGGTTGAGTCTAATTCTAAAGTTGAAGCTGAATCTAACTCTAAAGTTGAAGCTGAATCTAACTCTAAAGTTGAAGCACCAAAGAAGTCATATGCCTCAATTCTTAAGAGCATGAAGGAGGGTACTGCCCCATTTTCTACTCCAGCACCTGTGAGGTCTGTCCCAAAGAAGCAGGAGAACCAAGTGGCTACTGCTCCAATATCTGCTCCAGTTTCAGAAACAGTATCCAGCACAAATGCTAGAGAAAATGGGAATTTAGAGCCCGAAGCTGAAGGTCACTCTATCTACATTAAAGGTCTGCCAATGGATTGTACAAATACTGTAATCGAGACTGAGTTTAAGAAATTCGGACAGATCAAGAAGAATGGTGTTCAAGTTAGAATGCTAAGGGGGTTCTGTTTTGGCTTCGTGGAATTTGAGGCTGCAAGTTCTGTGCAAAGTGCGATGGAGGCTTCACCCATCGAGATCAGTGGACAGCAAGTTTATGTTGAGGAAAAGAGATCTACTCGAGGGAGGGGACGGTTTTCTGGGAAGGGCAATGGGAACGGGTACAGGACTGAGGGACCAAGAGGACGTGGAGGCTATGGAGGTGGTAGGGCTTATGGCCGTGGCGATTTCAATGGTGGTCGTGGTGATTTCAAGTCTGATTATGGAAGTAGGAGTAGCAATAGGGGAGGATCATTGGGCCGTGGAGGAGATGGATATCAGAGGTCTGACAATGGTGGTCGTGTGAATCGTGCTGGTGGGGTGGCGGTTAATGCAGCAGCAAAAGGCACAGCACCACAGGTGTCTGCCTCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

635

Amino Acids

69.22

Weight (kDa)

5.49

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	149 - 263	3e-28	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	462 - 518	1e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25150 AT3G25150
fragaria_vesca	FvH4_2g18460 FvH4_2g18460 FvH4_2g18460
malus_domestica	MD05G1170400.v1.1 MD10G1158600.v1.1
prunus_persica	Prupe.8G197600_v2.0.a1
pyrus_communis	pycom05g15760 pycom10g13710
rosa_chinensis	RchiOBHm_Chr6g0283941
rosa_laevigata	RLG00000012785
rosa_multiflora	Rmu_ssc0000442.1_g000025
rosa_roxburghii	Rroxscaffold_7G00185040
rosa_rugosa	Rorug06G0158600 Rorug06G0158700
rosa_samantha	Rh6AG271900 Rh6BG272800 Rh6CG274000 Rh6DG267000
rosa_wichuraiana	Rw6G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	896
AccB1I	GGYRCC	2 cut(s)	199, 742
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	1 cut(s)	379
AciI	CCGC	8 cut(s)	239, 272, 291, 301, 336, 369, 377, 1853
AclWI	GGATC	4 cut(s)	263, 368, 563, 1786
AcoI	YGGCCR	1 cut(s)	1705
AcsI	RAATTY	4 cut(s)	113, 1354, 1445, 1514
AcuI	CTGAAG	3 cut(s)	449, 1026, 1392
AcyI	GRCGYC	1 cut(s)	743
AfaI	GTAC	7 cut(s)	90, 122, 470, 996, 1225, 1414, 1652
AfiI	CCNNNNNNNGG	2 cut(s)	307, 310
AflII	CTTAAG	1 cut(s)	1205
AjiI	CACGTC	1 cut(s)	1676
AleI	CACNNNNGTG	1 cut(s)	234
AloI	GAACNNNNNNTCC	4 cut(s)	657, 689, 932, 964
Alw21I	GWGCWC	2 cut(s)	333, 618
Alw26I	GTCTC	2 cut(s)	428, 1424
AlwI	GGATC	4 cut(s)	263, 368, 563, 1786
AlwNI	CAGNNNCTG	4 cut(s)	908, 923, 1004, 1250
Ama87I	CYCGRG	1 cut(s)	1608
AoxI	GGCC	3 cut(s)	178, 1705, 1786
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	5 cut(s)	65, 403, 1523, 1862, 1865
ApoI	RAATTY	4 cut(s)	113, 1354, 1445, 1514
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	381, 745
AspS9I	GGNCC	5 cut(s)	178, 179, 703, 1664, 1786
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	4 cut(s)	325, 350, 1548, 1745
AvaI	CYCGRG	1 cut(s)	1608
AvaII	GGWCC	2 cut(s)	703, 1664
BaeGI	GKGCMC	2 cut(s)	182, 204
BanI	GGYRCC	2 cut(s)	199, 742
BanII	GRGCYC	5 cut(s)	182, 227, 333, 618, 1365
BbsI	GAAGAC	1 cut(s)	722
Bbv12I	GWGCWC	2 cut(s)	333, 618
BbvI	GCAGC	5 cut(s)	52, 415, 1510, 1874, 1877
BccI	CCATC	7 cut(s)	166, 382, 391, 545, 1540, 1568, 1793
BceAI	ACGGC	2 cut(s)	1692, 1773
BciVI	GTATCC	1 cut(s)	1336
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	428, 1424
BfaI	CTAG	3 cut(s)	155, 284, 1341
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	746
BfrI	CTTAAG	1 cut(s)	1205
BfuI	GTATCC	1 cut(s)	1336
BglII	AGATCT	1 cut(s)	1601
BisI	GCNGC	6 cut(s)	66, 301, 404, 1524, 1863, 1866
BlsI	GCNGC	6 cut(s)	67, 302, 405, 1525, 1864, 1867
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	703, 1664
BmeT110I	CYCGRG	1 cut(s)	1608
BmgBI	CACGTC	1 cut(s)	1676
BmgT120I	GGNCC	5 cut(s)	178, 179, 703, 1664, 1786
BmiI	GGNNCC	4 cut(s)	180, 201, 744, 1665
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	2 cut(s)	407, 693
BmsI	GCATC	2 cut(s)	631, 862
BmuI	ACTGGG	2 cut(s)	407, 693
BpiI	GAAGAC	1 cut(s)	722
BplI	GAGNNNNNCTC	4 cut(s)	412, 444, 1591, 1623
BpmI	CTGGAG	2 cut(s)	1227, 1293
Bpu10I	CCTNAGC	2 cut(s)	495, 1487
BpuEI	CTTGAG	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	1803
BsaHI	GRCGYC	1 cut(s)	743
BsaJI	CCNNGG	4 cut(s)	576, 1708, 1789, 1896
BsaXI	ACNNNNNCTCC	4 cut(s)	657, 687, 932, 962
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 310
Bse1I	ACTGG	5 cut(s)	31, 413, 688, 700, 1310
Bse3DI	GCAATG	2 cut(s)	457, 1645
Bse8I	GATNNNNATC	1 cut(s)	1803
BseDI	CCNNGG	4 cut(s)	576, 1708, 1789, 1896
BseGI	GGATG	1 cut(s)	646
BseJI	GATNNNNATC	1 cut(s)	1803
BseLI	CCNNNNNNNGG	2 cut(s)	307, 310
BseMI	GCAATG	2 cut(s)	457, 1645
BseMII	CTCAG	6 cut(s)	396, 486, 631, 915, 1425, 1650
BseNI	ACTGG	5 cut(s)	31, 413, 688, 700, 1310
BseRI	GAGGAG	2 cut(s)	323, 1809
BseSI	GKGCMC	2 cut(s)	182, 204
BseXI	GCAGC	5 cut(s)	52, 415, 1510, 1874, 1877
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	180, 1707, 1788
BshNI	GGYRCC	2 cut(s)	199, 742
BsiHKAI	GWGCWC	2 cut(s)	333, 618
BsiHKCI	CYCGRG	1 cut(s)	1608
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	5 cut(s)	37, 884, 1247, 1632, 1677
BslI	CCNNNNNNNGG	2 cut(s)	307, 310
BsmAI	GTCTC	2 cut(s)	428, 1424
BsmFI	GGGAC	5 cut(s)	37, 884, 1247, 1632, 1677
BsmI	GAATGC	2 cut(s)	47, 1488
BsnI	GGCC	3 cut(s)	180, 1707, 1788
BsoBI	CYCGRG	1 cut(s)	1608
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	6 cut(s)	182, 204, 227, 333, 618, 1365
Bsp1407I	TGTACA	1 cut(s)	1412
Bsp143I	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	8 cut(s)	239, 272, 291, 301, 336, 369, 377, 1853
BspANI	GGCC	3 cut(s)	180, 1707, 1788
BspCNI	CTCAG	6 cut(s)	395, 487, 630, 916, 1426, 1651
BspFNI	CGCG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	180, 201, 744, 1665
BspPI	GGATC	4 cut(s)	263, 368, 563, 1786
BspT107I	GGYRCC	2 cut(s)	199, 742
BspTI	CTTAAG	1 cut(s)	1205
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	457, 1645
BsrGI	TGTACA	1 cut(s)	1412
BsrI	ACTGG	5 cut(s)	31, 413, 688, 700, 1310
BssECI	CCNNGG	4 cut(s)	576, 1708, 1789, 1896
BssMI	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
BssNI	GRCGYC	1 cut(s)	743
BssT1I	CCWWGG	1 cut(s)	576
Bst4CI	ACNGT	8 cut(s)	79, 93, 143, 637, 948, 1324, 1423, 1623
Bst6I	CTCTTC	1 cut(s)	978
BstACI	GRCGYC	1 cut(s)	743
BstAFI	CTTAAG	1 cut(s)	1205
BstAUI	TGTACA	1 cut(s)	1412
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	32, 408
BstDEI	CTNAG	7 cut(s)	382, 495, 617, 924, 1434, 1487, 1659
BstDSI	CCRYGG	3 cut(s)	576, 1708, 1789
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	2 cut(s)	381, 745
BstKTI	GATC	9 cut(s)	109, 129, 271, 376, 558, 1458, 1569, 1604, 1781
BstMAI	GTCTC	2 cut(s)	428, 1424
BstMBI	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
BstMWI	GCNNNNNNNGC	5 cut(s)	416, 425, 434, 1550, 1859
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	2 cut(s)	182, 204
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	5 cut(s)	52, 415, 1510, 1874, 1877
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	2 cut(s)	268, 1601
BstYI	RGATCY	2 cut(s)	268, 1601
BsuI	GTATCC	1 cut(s)	1336
BsuRI	GGCC	3 cut(s)	180, 1707, 1788
BtgI	CCRYGG	3 cut(s)	576, 1708, 1789
BtgZI	GCGATG	1 cut(s)	1559
BtrI	CACGTC	1 cut(s)	1676
BtsCI	GGATG	1 cut(s)	646
BtsIMutI	CAGTG	4 cut(s)	625, 681, 924, 1576
Cac8I	GCNNGC	2 cut(s)	32, 408
CaiI	CAGNNNCTG	4 cut(s)	908, 923, 1004, 1250
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	381, 745
Cfr13I	GGNCC	5 cut(s)	178, 179, 703, 1664, 1786
Csp6I	GTAC	7 cut(s)	89, 121, 469, 995, 1224, 1413, 1651
CviAII	CATG	6 cut(s)	559, 577, 869, 896, 1213, 1902
CviQI	GTAC	7 cut(s)	89, 121, 469, 995, 1224, 1413, 1651
DdeI	CTNAG	7 cut(s)	382, 495, 617, 924, 1434, 1487, 1659
DinI	GGCGCC	1 cut(s)	744
DpnI	GATC	9 cut(s)	108, 128, 270, 375, 557, 1457, 1568, 1603, 1780
DpnII	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
DrdI	GACNNNNNNGTC	1 cut(s)	896
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	1705
Eam1104I	CTCTTC	1 cut(s)	978
EarI	CTCTTC	1 cut(s)	978
EciI	GGCGGA	2 cut(s)	325, 358
Ecl136II	GAGCTC	2 cut(s)	331, 616
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	5 cut(s)	182, 227, 333, 618, 1365
Eco32I	GATATC	2 cut(s)	523, 1805
Eco47I	GGWCC	2 cut(s)	703, 1664
Eco53kI	GAGCTC	2 cut(s)	331, 616
Eco57I	CTGAAG	3 cut(s)	449, 1026, 1392
Eco88I	CYCGRG	1 cut(s)	1608
EcoICRI	GAGCTC	2 cut(s)	331, 616
EcoO109I	RGGNCCY	2 cut(s)	178, 703
EcoRV	GATATC	2 cut(s)	523, 1805
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	5 cut(s)	182, 227, 333, 618, 1365
EgeI	GGCGCC	1 cut(s)	744
EheI	GGCGCC	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	6 cut(s)	562, 580, 872, 899, 1216, 1905
FaqI	GGGAC	5 cut(s)	37, 884, 1247, 1632, 1677
FatI	CATG	6 cut(s)	558, 576, 868, 895, 1212, 1901
FauI	CCCGC	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	1192
Fnu4HI	GCNGC	6 cut(s)	66, 301, 404, 1524, 1863, 1866
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	5 cut(s)	182, 227, 333, 618, 1365
Fsp4HI	GCNGC	6 cut(s)	66, 301, 404, 1524, 1863, 1866
FspBI	CTAG	3 cut(s)	155, 284, 1341
GlaI	GCGC	2 cut(s)	380, 744
GluI	GCNGC	6 cut(s)	66, 301, 404, 1524, 1863, 1866
GsuI	CTGGAG	2 cut(s)	1227, 1293
HaeII	RGCGCY	1 cut(s)	746
HaeIII	GGCC	3 cut(s)	180, 1707, 1788
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	381, 745
Hin1I	GRCGYC	1 cut(s)	743
Hin1II	CATG	6 cut(s)	562, 580, 872, 899, 1216, 1905
Hin6I	GCGC	2 cut(s)	379, 743
HinP1I	GCGC	2 cut(s)	379, 743
HincII	GTYRAC	2 cut(s)	96, 1015
HindII	GTYRAC	2 cut(s)	96, 1015
HindIII	AAGCTT	1 cut(s)	530
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	4 cut(s)	325, 350, 1548, 1745
Hpy166II	GTNNAC	3 cut(s)	96, 1015, 1574
Hpy188I	TCNGA	9 cut(s)	111, 385, 925, 961, 1318, 1451, 1747, 1809, 1816
Hpy188III	TCNNGA	8 cut(s)	146, 494, 559, 647, 1025, 1429, 1459, 1564
Hpy8I	GTNNAC	3 cut(s)	96, 1015, 1574
Hpy99I	CGWCG	2 cut(s)	56, 443
HpyAV	CCTTC	5 cut(s)	966, 982, 1210, 1367, 1627
HpyCH4III	ACNGT	8 cut(s)	79, 93, 143, 637, 948, 1324, 1423, 1623
HpyCH4IV	ACGT	6 cut(s)	87, 123, 441, 753, 930, 1675
HpyCH4V	TGCA	7 cut(s)	47, 403, 623, 886, 1526, 1537, 1862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	416, 425, 434, 1550, 1859
HpyF3I	CTNAG	7 cut(s)	382, 495, 617, 924, 1434, 1487, 1659
HpySE526I	ACGT	6 cut(s)	87, 123, 441, 753, 930, 1675
Hsp92I	GRCGYC	1 cut(s)	743
Hsp92II	CATG	6 cut(s)	562, 580, 872, 899, 1216, 1905
HspAI	GCGC	2 cut(s)	379, 743
KasI	GGCGCC	1 cut(s)	742
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
LmnI	GCTCC	4 cut(s)	242, 433, 1300, 1312
Lsp1109I	GCAGC	5 cut(s)	52, 415, 1510, 1874, 1877
LweI	GCATC	2 cut(s)	631, 862
MaeI	CTAG	3 cut(s)	155, 284, 1341
MaeII	ACGT	6 cut(s)	87, 123, 441, 753, 930, 1675
MaeIII	GTNAC	3 cut(s)	252, 679, 1376
MalI	GATC	9 cut(s)	108, 128, 270, 375, 557, 1457, 1568, 1603, 1780
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
MboII	GAAGA	8 cut(s)	340, 343, 455, 607, 727, 806, 995, 1474
MflI	RGATCY	2 cut(s)	268, 1601
MhlI	GDGCHC	6 cut(s)	182, 204, 227, 333, 618, 1365
MluCI	AATT	7 cut(s)	6, 113, 1114, 1200, 1354, 1445, 1514
Mly113I	GGCGCC	1 cut(s)	743
MlyI	GAGTC	2 cut(s)	430, 1118
MmeI	TCCRAC	1 cut(s)	825
MseI	TTAA	9 cut(s)	18, 84, 95, 692, 710, 1206, 1392, 1440, 1857
MslI	CAYNNNNRTG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	1205
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	2 cut(s)	47, 1488
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	5 cut(s)	416, 425, 434, 1550, 1859
NarI	GGCGCC	1 cut(s)	743
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	1192
NdeII	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
NlaIII	CATG	6 cut(s)	562, 580, 872, 899, 1216, 1905
NlaIV	GGNNCC	4 cut(s)	180, 201, 744, 1665
NmeAIII	GCCGAG	3 cut(s)	329, 352, 1877
NmuCI	GTSAC	2 cut(s)	679, 1376
OliI	CACNNNNGTG	1 cut(s)	234
PaeR7I	CTCGAG	1 cut(s)	1608
PagI	TCATGA	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	1834
PctI	GAATGC	2 cut(s)	47, 1488
PfeI	GAWTC	8 cut(s)	650, 797, 1031, 1061, 1085, 1133, 1157, 1834
PflFI	GACNNNGTC	1 cut(s)	932
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	6 cut(s)	67, 302, 405, 1525, 1864, 1867
PleI	GAGTC	2 cut(s)	429, 1117
PluTI	GGCGCC	1 cut(s)	746
PpsI	GAGTC	2 cut(s)	429, 1117
Ppu21I	YACGTR	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	2 cut(s)	333, 618
Psp5II	RGGWCCY	1 cut(s)	703
PspN4I	GGNNCC	4 cut(s)	180, 201, 744, 1665
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	5 cut(s)	178, 179, 703, 1664, 1786
PspPPI	RGGWCCY	1 cut(s)	703
PspXI	VCTCGAGB	1 cut(s)	1608
PstNI	CAGNNNCTG	4 cut(s)	908, 923, 1004, 1250
PsuI	RGATCY	2 cut(s)	268, 1601
PsyI	GACNNNGTC	1 cut(s)	932
RsaI	GTAC	7 cut(s)	90, 122, 470, 996, 1225, 1414, 1652
RsaNI	GTAC	7 cut(s)	89, 121, 469, 995, 1224, 1413, 1651
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	2 cut(s)	333, 618
SaqAI	TTAA	9 cut(s)	18, 84, 95, 692, 710, 1206, 1392, 1440, 1857
SatI	GCNGC	6 cut(s)	66, 301, 404, 1524, 1863, 1866
Sau3AI	GATC	9 cut(s)	106, 126, 268, 373, 555, 1455, 1566, 1601, 1778
Sau96I	GGNCC	5 cut(s)	178, 179, 703, 1664, 1786
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	2 cut(s)	430, 1118
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	6 cut(s)	182, 204, 227, 333, 618, 1365
SfaNI	GCATC	2 cut(s)	631, 862
SfcI	CTRYAG	1 cut(s)	160
SfoI	GGCGCC	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	1608
SinI	GGWCC	2 cut(s)	703, 1664
SlaI	CTCGAG	1 cut(s)	1608
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	645, 1205, 1608
SmoI	CTYRAG	3 cut(s)	645, 1205, 1608
Sse9I	AATT	7 cut(s)	6, 113, 1114, 1200, 1354, 1445, 1514
SsiI	CCGC	8 cut(s)	239, 272, 291, 301, 336, 369, 377, 1853
SspDI	GGCGCC	1 cut(s)	742
SspMI	CTAG	3 cut(s)	155, 284, 1341
SstI	GAGCTC	2 cut(s)	333, 618
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	8 cut(s)	79, 93, 143, 637, 948, 1324, 1423, 1623
TaiI	ACGT	6 cut(s)	90, 126, 444, 756, 933, 1678
TaqI	TCGA	3 cut(s)	1428, 1563, 1609
TasI	AATT	7 cut(s)	6, 113, 1114, 1200, 1354, 1445, 1514
TatI	WGTACW	2 cut(s)	468, 1412
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	8 cut(s)	650, 797, 1031, 1061, 1085, 1133, 1157, 1834
Tru1I	TTAA	9 cut(s)	18, 84, 95, 692, 710, 1206, 1392, 1440, 1857
Tru9I	TTAA	9 cut(s)	18, 84, 95, 692, 710, 1206, 1392, 1440, 1857
TscAI	CASTG	4 cut(s)	625, 688, 924, 1576
TseFI	GTSAC	2 cut(s)	679, 1376
TseI	GCWGC	5 cut(s)	65, 403, 1523, 1862, 1865
Tsp45I	GTSAC	2 cut(s)	679, 1376
TspDTI	ATGAA	3 cut(s)	494, 1057, 1229
TspRI	CASTG	4 cut(s)	625, 688, 924, 1576
Tth111I	GACNNNGTC	1 cut(s)	932
Vha464I	CTTAAG	1 cut(s)	1205
VpaK11BI	GGWCC	2 cut(s)	703, 1664
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	4 cut(s)	113, 1354, 1445, 1514
XhoI	CTCGAG	1 cut(s)	1608
XspI	CTAG	3 cut(s)	155, 284, 1341
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.