Rh6AG271900

G3BP-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
46608054 .. 46612790
4737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG271900.1

Sequence Viewer

Length: 1290 bp
ATGGCGTCCCCGGCGGTGCAGCAGCAAGTAGCCCCCACTGCCGATGTGGTTGGCAATGCATTTGTCCTTCAGTACTACCATATCTTGGAGCAGTCTCCTGAGCATGTTTACCGATTTTATCAAGATGATAGTAAGTTTGGTCGCCCCGAGGATAATGGGATGATGAAGACTGTAACCACCATGGATATAATCAACAGGAAAATAGTTGAGAATGGGAAGCTCAGTGCAAATGTTGTAACTGTGGATGCTCAAGAATCTTTCAATAGGGGTGTATTTGTCCTTGTGACTGGGTTTATAATTGGAAAGGACAATTTGAGGAAAAAATTTACCCAGAGCTTTTTCTTGGCACCACAAGAGAAAGGTGGCTTCTATGTTTTGAATGATGTTTTCAGATATGTGGATGATTCCATTCACCAAAATACGGACCATGGTTCAGTTGCTGATGTTGAACCTCCTCTTACTTCGGAGCACGATCCTTCTTTTCCAGACAGTCGTGTTTCTGAGCCTGTTACTGCTGTTTCTGAAGATGTCACTGAGGAGGAAGTATATAATCCTCCTGAGAATGGGGAAGTTCCAATTGAAGTAGAGGAAATTCCAGTACCTGAAGTTGTCGATGAAATCCCAGATGATTCAGAGGTAGTGACTGAATCTGGATACTCGGCACCGGTTGTGGCCATGGTGGAATCTGAGAAACCTGCATCGGTGGTGGACGATGCTAAATACTCAGCAACTGTGGTGGCTGAAGCTGGACATTCTGCACCGGTGGTGGCAGAAGCTGTACGTTCGGCACTGGTGGTGGTCGGATCTACTCCTAAATCAGAAGAAGTGCCTAAGAAGTCATATGCCTCAATTGTTAAGGTTATGAAGGAGAGTGCTTTACCATTTTCTACTCCTGCACATGCTTCTGTGAGAGCTATCCCAAAGCCCCAAGAGCAGCGGGTCATTGCTGCTCCACAACCTGCTTCAGTTTCTGAAACAGTAGTTTCCAGCACAAATGCTAAAGAAGATGGGAACCAACCAGAGGCTGAAGTTGAAGGGCACTCTATCTACATCAAGGGTCTGCCTTTTAATGCCACACCTGCTCTAATAGAGAATGAATTCAAAAAATTTGGACCCATCAAGAATGGTGGTGTACAAGTTAGAACTCAAAAGGGCTTTGGTTTTGGGTTTGTGGAATTTGAGGATGCAGGTGCTGTACAAAGTGCACTAGAGGCTTCACCCATCATGATTAATGGACGCCAAGTTGTTGTTGAGGAAAAGAGATCTACGAGTCGAGGTGAGTGGAATTGA

Protein Analysis

429

Amino Acids

46.57

Weight (kDa)

4.67

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 17 - 132 1.5e-27 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 349 - 414 2.9e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010242)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AarI CACCTGC 2 cut(s) 1087, 1178
Acc36I ACCTGC 4 cut(s) 703, 967, 1087, 1178
AccB1I GGYRCC 2 cut(s) 346, 661
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 2 cut(s) 14, 937
AclWI GGATC 2 cut(s) 467, 811
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 5 cut(s) 323, 591, 1097, 1106, 1175
AcuI CTGAAG 6 cut(s) 53, 543, 624, 762, 948, 1047
AcyI GRCGYC 2 cut(s) 5, 1237
AfaI GTAC 5 cut(s) 74, 600, 780, 1134, 1197
AfiI CCNNNNNNNGG 4 cut(s) 85, 421, 563, 1021
AgeI ACCGGT 2 cut(s) 664, 760
AgsI TTSAA 6 cut(s) 262, 379, 449, 581, 1034, 1102
AluBI AGCT 5 cut(s) 220, 336, 746, 776, 914
AluI AGCT 5 cut(s) 220, 336, 746, 776, 914
Alw21I GWGCWC 2 cut(s) 471, 1207
Alw26I GTCTC 1 cut(s) 99
Alw44I GTGCAC 1 cut(s) 1203
AlwI GGATC 2 cut(s) 467, 811
AlwNI CAGNNNCTG 7 cut(s) 440, 602, 731, 776, 971, 1025, 1193
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 672
ApaLI GTGCAC 1 cut(s) 1203
ApeKI GCWGC 4 cut(s) 19, 22, 934, 947
ApoI RAATTY 5 cut(s) 323, 591, 1097, 1106, 1175
AseI ATTAAT 1 cut(s) 1230
AsiGI ACCGGT 2 cut(s) 664, 760
Asp700I GAANNNNTTC 1 cut(s) 1097
AspS9I GGNCC 2 cut(s) 424, 1112
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 404, 1209, 1289
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 424, 1112
BaeGI GKGCMC 2 cut(s) 1041, 1207
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 2 cut(s) 346, 661
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 471, 1207
BbvI GCAGC 4 cut(s) 31, 34, 934, 946
BccI CCATC 3 cut(s) 1001, 1124, 1229
BciVI GTATCC 1 cut(s) 647
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 1208
BfuAI ACCTGC 4 cut(s) 703, 967, 1087, 1178
BfuI GTATCC 1 cut(s) 647
BglII AGATCT 1 cut(s) 1262
BisI GCNGC 4 cut(s) 20, 23, 935, 948
BlsI GCNGC 4 cut(s) 21, 24, 936, 949
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 424, 1112
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 424, 1112
BmiI GGNNCC 4 cut(s) 348, 663, 1013, 1114
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 4 cut(s) 235, 703, 707, 1174
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 5, 1237
BsaJI CCNNGG 5 cut(s) 9, 147, 180, 427, 675
BsaWI WCCGGW 2 cut(s) 664, 760
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 421, 563, 1021
Bse118I RCCGGY 2 cut(s) 664, 760
Bse1I ACTGG 3 cut(s) 292, 596, 795
Bse3DI GCAATG 2 cut(s) 61, 942
BseDI CCNNGG 5 cut(s) 9, 147, 180, 427, 675
BseGI GGATG 4 cut(s) 165, 250, 406, 1189
BseLI CCNNNNNNNGG 4 cut(s) 85, 421, 563, 1021
BseMI GCAATG 2 cut(s) 61, 942
BseMII CTCAG 7 cut(s) 90, 235, 492, 525, 549, 678, 738
BseNI ACTGG 3 cut(s) 292, 596, 795
BseRI GAGGAG 2 cut(s) 444, 551
BseSI GKGCMC 2 cut(s) 1041, 1207
BseXI GCAGC 4 cut(s) 31, 34, 934, 946
BsgI GTGCAG 3 cut(s) 38, 741, 879
BshFI GGCC 1 cut(s) 674
BshNI GGYRCC 2 cut(s) 346, 661
BshTI ACCGGT 2 cut(s) 664, 760
BsiHKAI GWGCWC 2 cut(s) 471, 1207
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 3 cut(s) 11, 665, 761
BslI CCNNNNNNNGG 4 cut(s) 85, 421, 563, 1021
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 3 cut(s) 471, 1041, 1207
Bsp1407I TGTACA 2 cut(s) 1132, 1195
Bsp143I GATC 3 cut(s) 472, 803, 1262
Bsp19I CCATGG 3 cut(s) 180, 427, 675
BspACI CCGC 2 cut(s) 14, 937
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 7 cut(s) 91, 234, 493, 526, 550, 679, 737
BspHI TCATGA 1 cut(s) 1224
BspLI GGNNCC 4 cut(s) 348, 663, 1013, 1114
BspMI ACCTGC 4 cut(s) 703, 967, 1087, 1178
BspPI GGATC 2 cut(s) 467, 811
BspT107I GGYRCC 2 cut(s) 346, 661
BsrDI GCAATG 2 cut(s) 61, 942
BsrFI RCCGGY 2 cut(s) 664, 760
BsrGI TGTACA 2 cut(s) 1132, 1195
BsrI ACTGG 3 cut(s) 292, 596, 795
BssAI RCCGGY 2 cut(s) 664, 760
BssECI CCNNGG 5 cut(s) 9, 147, 180, 427, 675
BssMI GATC 3 cut(s) 472, 803, 1262
BssNI GRCGYC 2 cut(s) 5, 1237
BssT1I CCWWGG 3 cut(s) 180, 427, 675
Bst4CI ACNGT 5 cut(s) 172, 241, 491, 733, 979
BstACI GRCGYC 2 cut(s) 5, 1237
BstAUI TGTACA 2 cut(s) 1132, 1195
BstDEI CTNAG 8 cut(s) 99, 221, 501, 534, 558, 687, 724, 831
BstDSI CCRYGG 3 cut(s) 180, 427, 675
BstF5I GGATG 4 cut(s) 165, 250, 406, 1189
BstKTI GATC 3 cut(s) 475, 806, 1265
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 472, 803, 1262
BstMWI GCNNNNNNNGC 5 cut(s) 11, 38, 931, 1079, 1211
BstNSI RCATGY 2 cut(s) 107, 902
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 1041, 1207
BstV1I GCAGC 4 cut(s) 31, 34, 934, 946
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 2 cut(s) 803, 1262
BstYI RGATCY 2 cut(s) 803, 1262
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 1 cut(s) 674
BtgI CCRYGG 3 cut(s) 180, 427, 675
BtsCI GGATG 4 cut(s) 165, 250, 406, 1189
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 36, 229, 531, 788
BveI ACCTGC 4 cut(s) 703, 967, 1087, 1178
CaiI CAGNNNCTG 7 cut(s) 440, 602, 731, 776, 971, 1025, 1193
CciI TCATGA 1 cut(s) 1224
Cfr10I RCCGGY 2 cut(s) 664, 760
Cfr13I GGNCC 2 cut(s) 424, 1112
CseI GACGC 1 cut(s) 1245
Csp6I GTAC 5 cut(s) 73, 599, 779, 1133, 1196
CspAI ACCGGT 2 cut(s) 664, 760
CspCI CAANNNNNGTGG 4 cut(s) 717, 752, 1108, 1143
CviAII CATG 6 cut(s) 104, 181, 428, 676, 899, 1225
CviQI GTAC 5 cut(s) 73, 599, 779, 1133, 1196
DdeI CTNAG 8 cut(s) 99, 221, 501, 534, 558, 687, 724, 831
DpnI GATC 3 cut(s) 474, 805, 1264
DpnII GATC 3 cut(s) 472, 803, 1262
EaeI YGGCCR 1 cut(s) 672
Eco130I CCWWGG 3 cut(s) 180, 427, 675
Eco47I GGWCC 2 cut(s) 424, 1112
Eco57I CTGAAG 6 cut(s) 53, 543, 624, 762, 948, 1047
Eco88I CYCGRG 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 1097
EcoT14I CCWWGG 3 cut(s) 180, 427, 675
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 3 cut(s) 180, 427, 675
FaeI CATG 6 cut(s) 107, 184, 431, 679, 902, 1228
FatI CATG 6 cut(s) 103, 180, 427, 675, 898, 1224
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 841
Fnu4HI GCNGC 4 cut(s) 20, 23, 935, 948
FokI GGATG 4 cut(s) 172, 257, 413, 1196
Fsp4HI GCNGC 4 cut(s) 20, 23, 935, 948
FspBI CTAG 1 cut(s) 1208
GluI GCNGC 4 cut(s) 20, 23, 935, 948
HaeIII GGCC 1 cut(s) 674
HapII CCGG 3 cut(s) 11, 665, 761
HgaI GACGC 1 cut(s) 1245
Hin1I GRCGYC 2 cut(s) 5, 1237
Hin1II CATG 6 cut(s) 107, 184, 431, 679, 902, 1228
HinfI GANTC 6 cut(s) 254, 404, 629, 647, 683, 1270
HpaII CCGG 3 cut(s) 11, 665, 761
HphI GGTGA 3 cut(s) 404, 1209, 1289
Hpy166II GTNNAC 4 cut(s) 109, 709, 1133, 1205
Hpy188I TCNGA 9 cut(s) 392, 466, 502, 523, 634, 688, 803, 820, 973
Hpy188III TCNNGA 8 cut(s) 98, 122, 251, 485, 557, 651, 1120, 1225
Hpy8I GTNNAC 4 cut(s) 109, 709, 1133, 1205
HpyAV CCTTC 4 cut(s) 77, 486, 859, 1028
HpyCH4III ACNGT 5 cut(s) 172, 241, 491, 733, 979
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 8 cut(s) 19, 59, 227, 698, 758, 896, 1187, 1205
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 38, 931, 1079, 1211
HpyF3I CTNAG 8 cut(s) 99, 221, 501, 534, 558, 687, 724, 831
HpySE526I ACGT 1 cut(s) 781
Hsp92I GRCGYC 2 cut(s) 5, 1237
Hsp92II CATG 6 cut(s) 107, 184, 431, 679, 902, 1228
Kzo9I GATC 3 cut(s) 472, 803, 1262
LmnI GCTCC 3 cut(s) 88, 466, 955
Lsp1109I GCAGC 4 cut(s) 31, 34, 934, 946
LweI GCATC 4 cut(s) 235, 703, 707, 1174
MaeI CTAG 1 cut(s) 1208
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 6 cut(s) 172, 235, 283, 508, 529, 640
MalI GATC 3 cut(s) 474, 805, 1264
MboI GATC 3 cut(s) 472, 803, 1262
MboII GAAGA 4 cut(s) 178, 536, 833, 1016
MfeI CAATTG 2 cut(s) 576, 849
MflI RGATCY 2 cut(s) 803, 1262
MhlI GDGCHC 3 cut(s) 471, 1041, 1207
MlsI TGGCCA 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 1279
MmeI TCCRAC 1 cut(s) 781
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 1097
MscI TGGCCA 1 cut(s) 674
MseI TTAA 3 cut(s) 855, 1068, 1230
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 937
MspI CCGG 3 cut(s) 11, 665, 761
MspR9I CCNGG 1 cut(s) 11
MunI CAATTG 2 cut(s) 576, 849
MwoI GCNNNNNNNGC 5 cut(s) 11, 38, 931, 1079, 1211
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 3 cut(s) 180, 427, 675
NdeI CATATG 1 cut(s) 841
NdeII GATC 3 cut(s) 472, 803, 1262
NlaIII CATG 6 cut(s) 107, 184, 431, 679, 902, 1228
NlaIV GGNNCC 4 cut(s) 348, 663, 1013, 1114
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 3 cut(s) 283, 529, 640
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 2 cut(s) 107, 902
PagI TCATGA 1 cut(s) 1224
PaqCI CACCTGC 2 cut(s) 1087, 1178
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 5 cut(s) 254, 404, 629, 647, 683
PflMI CCANNNNNTGG 1 cut(s) 85
PinAI ACCGGT 2 cut(s) 664, 760
PkrI GCNGC 4 cut(s) 21, 24, 936, 949
PleI GAGTC 1 cut(s) 1278
PpsI GAGTC 1 cut(s) 1278
PshBI ATTAAT 1 cut(s) 1230
PsiI TTATAA 1 cut(s) 296
PspN4I GGNNCC 4 cut(s) 348, 663, 1013, 1114
PspPI GGNCC 2 cut(s) 424, 1112
PstNI CAGNNNCTG 7 cut(s) 440, 602, 731, 776, 971, 1025, 1193
PsuI RGATCY 2 cut(s) 803, 1262
RsaI GTAC 5 cut(s) 74, 600, 780, 1134, 1197
RsaNI GTAC 5 cut(s) 73, 599, 779, 1133, 1196
SaqAI TTAA 3 cut(s) 855, 1068, 1230
SatI GCNGC 4 cut(s) 20, 23, 935, 948
Sau3AI GATC 3 cut(s) 472, 803, 1262
Sau96I GGNCC 2 cut(s) 424, 1112
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 1 cut(s) 1279
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 3 cut(s) 471, 1041, 1207
SfaNI GCATC 4 cut(s) 235, 703, 707, 1174
SgrAI CRCCGGYG 1 cut(s) 760
SinI GGWCC 2 cut(s) 424, 1112
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
SsiI CCGC 2 cut(s) 14, 937
SspMI CTAG 1 cut(s) 1208
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 3 cut(s) 180, 427, 675
TaaI ACNGT 5 cut(s) 172, 241, 491, 733, 979
TaiI ACGT 1 cut(s) 784
TaqI TCGA 2 cut(s) 612, 1273
TatI WGTACW 3 cut(s) 72, 1132, 1195
TfiI GAWTC 5 cut(s) 254, 404, 629, 647, 683
Tru1I TTAA 3 cut(s) 855, 1068, 1230
Tru9I TTAA 3 cut(s) 855, 1068, 1230
TscAI CASTG 4 cut(s) 43, 229, 538, 795
TseFI GTSAC 3 cut(s) 283, 529, 640
TseI GCWGC 4 cut(s) 19, 22, 934, 947
Tsp45I GTSAC 3 cut(s) 283, 529, 640
TspDTI ATGAA 4 cut(s) 179, 630, 878, 1110
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 4 cut(s) 43, 229, 538, 795
Van91I CCANNNNNTGG 1 cut(s) 85
VneI GTGCAC 1 cut(s) 1203
VpaK11BI GGWCC 2 cut(s) 424, 1112
VspI ATTAAT 1 cut(s) 1230
XapI RAATTY 5 cut(s) 323, 591, 1097, 1106, 1175
XceI RCATGY 2 cut(s) 107, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 1 cut(s) 1208
ZrmI AGTACT 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.