Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010242

Physical Location & Seq

Genomic Coordinates Forward (+)

17165546 .. 17168456

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13710.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGCAACGATGGTGCAGCAAGCCCCAGCTGCAAGCCTCACTCCTACTGCCGATGTTGTCGGTAATGCCTTTGTTCTTCAGTACTACAATATCTTGCAACAATCCCCAGAGCTTGTTCATCGATTTTACCAAGATATTAGTAAGCTTGGTCGTCCGGGAGATGGTGGGATCATGAGCATTACTACCACCATGGAGGAAATCAACAAGAAGATACTTGATTACGGAGAGCTCAGTGCAAATATCAAGACTGTGGATGCTCAGGAATCTTACAATGGAGGAGTATTTGTTCTTGTCACTGGATATGTTGAAGATTCCACCCCTGAAAATGAGGACAATGGATTGGTTGTTGATGTTGAAGTTGAACCTCCTATTACCCCCAAACATGATGCTCCTGCTTTGCAGGACAATCATGTCCCAGAGCCTGTGATTGCAGTGTCTGAGGATGTTGCCAAGGAGGAAGTAATCAAACCTTCTGAAAATGGAGTAGTTTCAGTTGAAGAGGAAGCAGTACCAGAACCTGAAGTTGTCAATGAAATTCCTGATGATTTGCAATCGGTGGTTAAAGTCGAAGCTGAATCTTACTCAAAAGTTGAAGATGAATCCAACCCCAAAGTTGAGGCTGAGTTCAACTCCAAAGTTGAAGCTGAATCTAACTCTAAAGTTGAAGCACCGAAGAAGTCTTATGCCTCAATTCTTAAGAGCATTAAGGAGGGTACTGTCCCATTTTCTACTCCGGCACCCATGAGGTTTGTCCCAAAGAAGCAGGAGCACCAAGTGACTGCTGCTCCAATATCTGCTCCAGTTTCAGAAACAGTATCCAGCACCAATGCCAGAGAAAATGGGAATTTAGAGCCCGAAGCTGAAGGTTACTCTATCTACATTAAAGGTCTGCCAATGGATTGTACAAATACTGTAATTGAGAATGAGTTTAAGAAATTTGGACAGATCAAGAAGAATGGTGTGCAAGTTAGAATCCTAAGGGGGTTCTGTTTTGGCTTCGTGGAATTTGAGGCTGCAAGTTCTGTGCAAAGTGCGATGGAGGCTTCACCCATCGTGATTGGTGGACGCCAAGTTTTTGTTGAGGAAAAGCGATCAACTCGAGGGAGGGGACGGTTTTCCGGAAGGGGAAATGGGAACGGGTACAGGACTGAGGGACCAAGAGGACGTGGAGGCTATGGAGGTGGTAGGGCTTATGGTCGTGGCGATTTCAATGGTGGTCGTGGCGATTTCAAGTCTGATTATGGAAGTAGGAGTAGCAATAGGGGAGGATCATCGGGCCGTGGAGGAGATGGATATCAGAGGTCTGACAATGGTGCTCGTGTGAATCGTTCTGGTGGGGTAGCGGTTAATGCAGCAGCGAAAAGCACAGTACCACAGGTGTCTGCGTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

465

Amino Acids

49.7

Weight (kDa)

5.02

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25150 AT3G25150
fragaria_vesca	FvH4_2g18460 FvH4_2g18460 FvH4_2g18460
malus_domestica	MD05G1170400.v1.1 MD10G1158600.v1.1
prunus_persica	Prupe.8G197600_v2.0.a1
pyrus_communis	pycom05g15760 pycom10g13710
rosa_chinensis	RchiOBHm_Chr6g0283941
rosa_laevigata	RLG00000012785
rosa_multiflora	Rmu_ssc0000442.1_g000025
rosa_roxburghii	Rroxscaffold_7G00185040
rosa_rugosa	Rorug06G0158600 Rorug06G0158700
rosa_samantha	Rh6AG271900 Rh6BG272800 Rh6CG274000 Rh6DG267000
rosa_wichuraiana	Rw6G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	736
AccIII	TCCGGA	1 cut(s)	1118
AciI	CCGC	1 cut(s)	1343
AclWI	GGATC	2 cut(s)	176, 1276
AcsI	RAATTY	4 cut(s)	534, 844, 935, 1004
AcuI	CTGAAG	3 cut(s)	62, 540, 882
AcyI	GRCGYC	1 cut(s)	1066
AdeI	CACNNNGTG	1 cut(s)	775
AfaI	GTAC	6 cut(s)	83, 510, 715, 904, 1142, 1371
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflII	CTTAAG	1 cut(s)	695
AjiI	CACGTC	1 cut(s)	1166
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	8 cut(s)	29, 112, 145, 229, 572, 644, 860, 1391
AluI	AGCT	8 cut(s)	29, 112, 145, 229, 572, 644, 860, 1391
Alw21I	GWGCWC	3 cut(s)	231, 771, 1318
AlwI	GGATC	2 cut(s)	176, 1276
AlwNI	CAGNNNCTG	3 cut(s)	422, 437, 518
Ama87I	CYCGRG	1 cut(s)	1098
Aor13HI	TCCGGA	1 cut(s)	1118
AoxI	GGCC	1 cut(s)	1276
ApeKI	GCWGC	6 cut(s)	16, 29, 782, 1013, 1352, 1355
ApoI	RAATTY	4 cut(s)	534, 844, 935, 1004
AspS9I	GGNCC	2 cut(s)	1154, 1276
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	1038
AvaI	CYCGRG	1 cut(s)	1098
AvaII	GGWCC	1 cut(s)	1154
AxyI	CCTNAGG	1 cut(s)	977
BanI	GGYRCC	1 cut(s)	736
BanII	GRGCYC	2 cut(s)	231, 855
BauI	CACGAG	1 cut(s)	1317
Bbv12I	GWGCWC	3 cut(s)	231, 771, 1318
BbvI	GCAGC	6 cut(s)	16, 28, 769, 1000, 1364, 1367
BccI	CCATC	5 cut(s)	4, 155, 1030, 1058, 1283
BceAI	ACGGC	1 cut(s)	1263
BciVI	GTATCC	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	826
BisI	GCNGC	6 cut(s)	17, 30, 783, 1014, 1353, 1356
BlsI	GCNGC	6 cut(s)	18, 31, 784, 1015, 1354, 1357
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	1154
BmeT110I	CYCGRG	1 cut(s)	1098
BmgBI	CACGTC	1 cut(s)	1166
BmgT120I	GGNCC	2 cut(s)	1154, 1276
BmiI	GGNNCC	2 cut(s)	738, 1155
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	244, 376
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	1293
BsaHI	GRCGYC	1 cut(s)	1066
BsaJI	CCNNGG	3 cut(s)	189, 450, 1279
BsaWI	WCCGGW	1 cut(s)	1118
BsaXI	ACNNNNNCTCC	4 cut(s)	270, 300, 769, 799
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	301, 800
Bse21I	CCTNAGG	1 cut(s)	977
Bse8I	GATNNNNATC	1 cut(s)	1293
BseAI	TCCGGA	1 cut(s)	1118
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	3 cut(s)	189, 450, 1279
BseGI	GGATG	2 cut(s)	259, 448
BseJI	GATNNNNATC	1 cut(s)	1293
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	5 cut(s)	244, 272, 429, 612, 1140
BseNI	ACTGG	2 cut(s)	301, 800
BseRI	GAGGAG	2 cut(s)	291, 1299
BseXI	GCAGC	6 cut(s)	16, 28, 769, 1000, 1364, 1367
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	1278
BshNI	GGYRCC	1 cut(s)	736
BshVI	ATCGAT	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	231, 771, 1318
BsiHKCI	CYCGRG	1 cut(s)	1098
BsiSI	CCGG	3 cut(s)	155, 734, 1119
BslFI	GGGAC	5 cut(s)	398, 704, 737, 1122, 1167
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	5 cut(s)	398, 704, 737, 1122, 1167
BsnI	GGCC	1 cut(s)	1278
BsoBI	CYCGRG	1 cut(s)	1098
Bsp1286I	GDGCHC	4 cut(s)	231, 771, 855, 1318
Bsp13I	TCCGGA	1 cut(s)	1118
Bsp1407I	TGTACA	1 cut(s)	902
Bsp143I	GATC	4 cut(s)	168, 945, 1091, 1268
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	1343
BspANI	GGCC	1 cut(s)	1278
BspCNI	CTCAG	5 cut(s)	243, 271, 430, 613, 1141
BspDI	ATCGAT	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	1118
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	738, 1155
BspPI	GGATC	2 cut(s)	176, 1276
BspT107I	GGYRCC	1 cut(s)	736
BspTI	CTTAAG	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	902
BsrI	ACTGG	2 cut(s)	301, 800
BssECI	CCNNGG	3 cut(s)	189, 450, 1279
BssMI	GATC	4 cut(s)	168, 945, 1091, 1268
BssNI	GRCGYC	1 cut(s)	1066
BssSI	CACGAG	1 cut(s)	1317
BssT1I	CCWWGG	2 cut(s)	189, 450
Bst2BI	CACGAG	1 cut(s)	1317
Bst4CI	ACNGT	6 cut(s)	250, 718, 814, 913, 1113, 1369
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	1066
BstAFI	CTTAAG	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	21, 34
BstDEI	CTNAG	6 cut(s)	230, 258, 438, 621, 977, 1149
BstDSI	CCRYGG	2 cut(s)	189, 1279
BstF5I	GGATG	2 cut(s)	259, 448
BstKTI	GATC	4 cut(s)	171, 948, 1094, 1271
BstMBI	GATC	4 cut(s)	168, 945, 1091, 1268
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 1040, 1349
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	6 cut(s)	16, 28, 769, 1000, 1364, 1367
Bsu15I	ATCGAT	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	977
BsuI	GTATCC	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	1278
BsuTUI	ATCGAT	1 cut(s)	121
BtgI	CCRYGG	2 cut(s)	189, 1279
BtgZI	GCGATG	1 cut(s)	1049
BtrI	CACGTC	1 cut(s)	1166
BtsCI	GGATG	2 cut(s)	259, 448
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	238, 294, 438
Cac8I	GCNNGC	2 cut(s)	21, 34
CaiI	CAGNNNCTG	3 cut(s)	422, 437, 518
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	1154, 1276
ClaI	ATCGAT	1 cut(s)	121
CseI	GACGC	2 cut(s)	1074, 1374
Csp6I	GTAC	6 cut(s)	82, 509, 714, 903, 1141, 1370
CviAII	CATG	5 cut(s)	172, 190, 383, 410, 742
CviQI	GTAC	6 cut(s)	82, 509, 714, 903, 1141, 1370
DdeI	CTNAG	6 cut(s)	230, 258, 438, 621, 977, 1149
DpnI	GATC	4 cut(s)	170, 947, 1093, 1270
DpnII	GATC	4 cut(s)	168, 945, 1091, 1268
DraIII	CACNNNGTG	1 cut(s)	775
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	189, 450
Eco24I	GRGCYC	2 cut(s)	231, 855
Eco32I	GATATC	1 cut(s)	1295
Eco47I	GGWCC	1 cut(s)	1154
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	3 cut(s)	62, 540, 882
Eco81I	CCTNAGG	1 cut(s)	977
Eco88I	CYCGRG	1 cut(s)	1098
EcoICRI	GAGCTC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	1295
EcoT14I	CCWWGG	2 cut(s)	189, 450
EcoT38I	GRGCYC	2 cut(s)	231, 855
ErhI	CCWWGG	2 cut(s)	189, 450
FaeI	CATG	5 cut(s)	175, 193, 386, 413, 745
FaqI	GGGAC	5 cut(s)	398, 704, 737, 1122, 1167
FatI	CATG	5 cut(s)	171, 189, 382, 409, 741
Fnu4HI	GCNGC	6 cut(s)	17, 30, 783, 1014, 1353, 1356
FokI	GGATG	2 cut(s)	266, 455
FriOI	GRGCYC	2 cut(s)	231, 855
Fsp4HI	GCNGC	6 cut(s)	17, 30, 783, 1014, 1353, 1356
GluI	GCNGC	6 cut(s)	17, 30, 783, 1014, 1353, 1356
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	1278
HapII	CCGG	3 cut(s)	155, 734, 1119
HgaI	GACGC	2 cut(s)	1074, 1374
Hin1I	GRCGYC	1 cut(s)	1066
Hin1II	CATG	5 cut(s)	175, 193, 386, 413, 745
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	7 cut(s)	263, 311, 575, 599, 647, 972, 1324
HpaII	CCGG	3 cut(s)	155, 734, 1119
HphI	GGTGA	1 cut(s)	1038
Hpy166II	GTNNAC	1 cut(s)	1064
Hpy188I	TCNGA	6 cut(s)	439, 475, 808, 1237, 1299, 1306
Hpy188III	TCNNGA	7 cut(s)	172, 244, 260, 539, 949, 1054, 1119
Hpy8I	GTNNAC	1 cut(s)	1064
HpyAV	CCTTC	3 cut(s)	480, 857, 1116
HpyCH4III	ACNGT	6 cut(s)	250, 718, 814, 913, 1113, 1369
HpyCH4IV	ACGT	1 cut(s)	1165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 1040, 1349
HpyF3I	CTNAG	6 cut(s)	230, 258, 438, 621, 977, 1149
HpySE526I	ACGT	1 cut(s)	1165
Hsp92I	GRCGYC	1 cut(s)	1066
Hsp92II	CATG	5 cut(s)	175, 193, 386, 413, 745
Kpn2I	TCCGGA	1 cut(s)	1118
Kzo9I	GATC	4 cut(s)	168, 945, 1091, 1268
LmnI	GCTCC	4 cut(s)	394, 766, 790, 802
Lsp1109I	GCAGC	6 cut(s)	16, 28, 769, 1000, 1364, 1367
LweI	GCATC	2 cut(s)	244, 376
MaeII	ACGT	1 cut(s)	1165
MaeIII	GTNAC	3 cut(s)	292, 775, 866
MalI	GATC	4 cut(s)	170, 947, 1093, 1270
MboI	GATC	4 cut(s)	168, 945, 1091, 1268
MboII	GAAGA	7 cut(s)	68, 220, 320, 509, 605, 685, 964
MhlI	GDGCHC	4 cut(s)	231, 771, 855, 1318
MluCI	AATT	6 cut(s)	534, 690, 844, 915, 935, 1004
MmeI	TCCRAC	1 cut(s)	627
MroI	TCCGGA	1 cut(s)	1118
MseI	TTAA	6 cut(s)	561, 696, 705, 882, 930, 1347
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	3 cut(s)	155, 734, 1119
MspR9I	CCNGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	29, 1040, 1349
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	168, 945, 1091, 1268
NlaIII	CATG	5 cut(s)	175, 193, 386, 413, 745
NlaIV	GGNNCC	2 cut(s)	738, 1155
NmuCI	GTSAC	2 cut(s)	292, 775
PaeR7I	CTCGAG	1 cut(s)	1098
PagI	TCATGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	1324
PfeI	GAWTC	7 cut(s)	263, 311, 575, 599, 647, 972, 1324
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	6 cut(s)	18, 31, 784, 1015, 1354, 1357
Psp124BI	GAGCTC	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	738, 1155
PspPI	GGNCC	2 cut(s)	1154, 1276
PspXI	VCTCGAGB	1 cut(s)	1098
PstNI	CAGNNNCTG	3 cut(s)	422, 437, 518
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	6 cut(s)	83, 510, 715, 904, 1142, 1371
RsaNI	GTAC	6 cut(s)	82, 509, 714, 903, 1141, 1370
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	6 cut(s)	561, 696, 705, 882, 930, 1347
SatI	GCNGC	6 cut(s)	17, 30, 783, 1014, 1353, 1356
Sau3AI	GATC	4 cut(s)	168, 945, 1091, 1268
Sau96I	GGNCC	2 cut(s)	1154, 1276
ScaI	AGTACT	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	4 cut(s)	231, 771, 855, 1318
SfaNI	GCATC	2 cut(s)	244, 376
Sfr274I	CTCGAG	1 cut(s)	1098
SinI	GGWCC	1 cut(s)	1154
SlaI	CTCGAG	1 cut(s)	1098
SmlI	CTYRAG	2 cut(s)	695, 1098
SmoI	CTYRAG	2 cut(s)	695, 1098
Sse9I	AATT	6 cut(s)	534, 690, 844, 915, 935, 1004
SsiI	CCGC	1 cut(s)	1343
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	189, 450
TaaI	ACNGT	6 cut(s)	250, 718, 814, 913, 1113, 1369
TaiI	ACGT	1 cut(s)	1168
TaqI	TCGA	3 cut(s)	121, 567, 1099
TasI	AATT	6 cut(s)	534, 690, 844, 915, 935, 1004
TatI	WGTACW	2 cut(s)	81, 902
TfiI	GAWTC	7 cut(s)	263, 311, 575, 599, 647, 972, 1324
Tru1I	TTAA	6 cut(s)	561, 696, 705, 882, 930, 1347
Tru9I	TTAA	6 cut(s)	561, 696, 705, 882, 930, 1347
TscAI	CASTG	3 cut(s)	238, 301, 438
TseFI	GTSAC	2 cut(s)	292, 775
TseI	GCWGC	6 cut(s)	16, 29, 782, 1013, 1352, 1355
Tsp45I	GTSAC	2 cut(s)	292, 775
TspDTI	ATGAA	3 cut(s)	107, 546, 612
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	3 cut(s)	238, 301, 438
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	1154
XapI	RAATTY	4 cut(s)	534, 844, 935, 1004
XhoI	CTCGAG	1 cut(s)	1098
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.