Rh6DG267000

G3BP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010242
Physical Location & Seq
Forward (+)
45955637 .. 45960264
4628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG267000.1

Sequence Viewer

Length: 1185 bp
ATGGCGTCCCCGGCGGTGCAGCAGCAAGTAGCCCCTACTGCTGATGTGGTTGGCAATGCATTTGTCCTTCAGTACTACCATATCTTGGAGCAGTCTCCTGAGCATGTTTACCGATTTTATCAAGATGATAGTAAGTTTGGTCGCCCCGAGGATAATGGAATGATGAAGACTGTAACCACCATGGATATAATCAACAGGAAAATAGTTGAGAATGGGAAGCTCAGTGCAAATGTTGTAACTGTGGATGCTCAAGAATCTTTCAATAGGGGTGTATTTGTCCTTGTGACTGGGTTTATAATTGGAAAGGACAATTTGAGGAAAAAATTTACCCAGAGCTTTTTCTTGGCACCACAAGAGAAAGGTGGCTTCTATGTTTTGAATGATGTTTTCAGATATGTGGATGATTCCATTCACCAAAATACGGACCATGGTTCAGTTGCTGATGTTGAACCTCCTCTTACTTCGGAGCACGATCCTTCTTTTCCAGACAGTCGTGTTTCTGAGCCTGTTACTGCTGTTTCTGAAGACGTCACTGAGGAGGAAGTATATAATCCTCTTGAGAATGGGGAAGTTCCAATTGAAGTAGAGGAAATTCCAGTACCTGAAGTTGTCGATGAAATCCCAGATGATTCAGAGGTAGTGACTGAATCTGGATACTCGGCACCGGTTGTGGCCATGGTGGAATCTGAGAAACCTGCATCGGTGGTGGACGATGCTAAATACTCAGCAACTGTGGTGGCTGAAGCTGGACATTCTGCACCGGTGGTGGCAGAATCTGTACATTCGGCACCGGTGGTGGTCGGATCATCTCCTAAATCAGAAGAAGTGCCTAAGAAGTCATATGCCTCAATTGTTAAGGTTATGAAGGAGAGTGCTTTACCATTTTCTACTCCTGCACATGCTGCTGTGAGAGCTATCCCAAAGCCCCAAGAGCAGCGGGTCATTGCTGCTCCACAACCTGCTTCAGTTTCTGAAACAGTAGTTTCCAGCACAAATGCTAAAGAAGATGGGAACCAACCAGAGGCTGAAGTTGAAGGGCACTCTATCTACATCAAAGGTCTGCCTTTTAATGCCACACCTGCTCTAATAGAGAATGAATTCAAAAAATTTGGACCCATCAAGAATGGTGGTGTACAAGTTAGAACTCAAAAGGTTTGTCCATTCTTAACTTGGCTTATCTTCTGA

Protein Analysis

394

Amino Acids

42.87

Weight (kDa)

4.69

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 17 - 132 1.2e-27 Nuclear transport factor 2 (NTF2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25150 AT3G25150
fragaria_vesca FvH4_2g18460 FvH4_2g18460 FvH4_2g18460
malus_domestica MD05G1170400.v1.1 MD10G1158600.v1.1
prunus_persica Prupe.8G197600_v2.0.a1
pyrus_communis pycom05g15760 pycom10g13710
rosa_chinensis RchiOBHm_Chr6g0283941
rosa_laevigata RLG00000012785
rosa_multiflora Rmu_ssc0000442.1_g000025
rosa_roxburghii Rroxscaffold_7G00185040
rosa_rugosa Rorug06G0158600 Rorug06G0158700
rosa_samantha Rh6AG271900 Rh6BG272800 Rh6CG274000 Rh6DG267000
rosa_wichuraiana Rw6G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AarI CACCTGC 1 cut(s) 1087
AatII GACGTC 1 cut(s) 531
Acc36I ACCTGC 3 cut(s) 703, 967, 1087
AccB1I GGYRCC 3 cut(s) 346, 661, 787
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 2 cut(s) 14, 937
AclWI GGATC 2 cut(s) 467, 811
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 4 cut(s) 323, 591, 1097, 1106
AcuI CTGAAG 6 cut(s) 53, 543, 624, 762, 948, 1047
AcyI GRCGYC 2 cut(s) 5, 528
AfaI GTAC 4 cut(s) 74, 600, 780, 1134
AfiI CCNNNNNNNGG 3 cut(s) 85, 421, 1021
AgeI ACCGGT 3 cut(s) 664, 760, 790
AgsI TTSAA 6 cut(s) 262, 379, 449, 581, 1034, 1102
AluBI AGCT 4 cut(s) 220, 336, 746, 914
AluI AGCT 4 cut(s) 220, 336, 746, 914
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 2 cut(s) 467, 811
AlwNI CAGNNNCTG 6 cut(s) 440, 602, 731, 776, 971, 1025
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 5 cut(s) 19, 22, 902, 934, 947
ApoI RAATTY 4 cut(s) 323, 591, 1097, 1106
ArsI GACNNNNNNTTYG 2 cut(s) 1141, 1173
AsiGI ACCGGT 3 cut(s) 664, 760, 790
Asp700I GAANNNNTTC 1 cut(s) 1097
AspS9I GGNCC 2 cut(s) 424, 1112
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 424, 1112
BaeGI GKGCMC 1 cut(s) 1041
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 3 cut(s) 346, 661, 787
BbsI GAAGAC 2 cut(s) 173, 531
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 5 cut(s) 31, 34, 889, 934, 946
BccI CCATC 2 cut(s) 1001, 1124
BciVI GTATCC 1 cut(s) 647
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 99
BfuAI ACCTGC 3 cut(s) 703, 967, 1087
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 5 cut(s) 20, 23, 903, 935, 948
BlsI GCNGC 5 cut(s) 21, 24, 904, 936, 949
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 424, 1112
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 424, 1112
BmiI GGNNCC 5 cut(s) 348, 663, 789, 1013, 1114
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 235, 703, 707
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 173, 531
Bpu10I CCTNAGC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 234, 578
BpuMI CCSGG 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 5, 528
BsaJI CCNNGG 5 cut(s) 9, 147, 180, 427, 675
BsaWI WCCGGW 3 cut(s) 664, 760, 790
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 421, 1021
Bse118I RCCGGY 3 cut(s) 664, 760, 790
Bse1I ACTGG 2 cut(s) 292, 596
Bse3DI GCAATG 2 cut(s) 61, 942
BseDI CCNNGG 5 cut(s) 9, 147, 180, 427, 675
BseGI GGATG 2 cut(s) 250, 406
BseLI CCNNNNNNNGG 3 cut(s) 85, 421, 1021
BseMI GCAATG 2 cut(s) 61, 942
BseMII CTCAG 6 cut(s) 90, 235, 492, 525, 678, 738
BseNI ACTGG 2 cut(s) 292, 596
BseRI GAGGAG 2 cut(s) 444, 551
BseSI GKGCMC 1 cut(s) 1041
BseXI GCAGC 5 cut(s) 31, 34, 889, 934, 946
BsgI GTGCAG 3 cut(s) 38, 741, 879
BshFI GGCC 1 cut(s) 674
BshNI GGYRCC 3 cut(s) 346, 661, 787
BshTI ACCGGT 3 cut(s) 664, 760, 790
BsiHKAI GWGCWC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 4 cut(s) 11, 665, 761, 791
BslI CCNNNNNNNGG 3 cut(s) 85, 421, 1021
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 471, 1041
Bsp1407I TGTACA 2 cut(s) 778, 1132
Bsp143I GATC 2 cut(s) 472, 803
Bsp19I CCATGG 3 cut(s) 180, 427, 675
BspACI CCGC 2 cut(s) 14, 937
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 6 cut(s) 91, 234, 493, 526, 679, 737
BspLI GGNNCC 5 cut(s) 348, 663, 789, 1013, 1114
BspMI ACCTGC 3 cut(s) 703, 967, 1087
BspPI GGATC 2 cut(s) 467, 811
BspT107I GGYRCC 3 cut(s) 346, 661, 787
BsrDI GCAATG 2 cut(s) 61, 942
BsrFI RCCGGY 3 cut(s) 664, 760, 790
BsrGI TGTACA 2 cut(s) 778, 1132
BsrI ACTGG 2 cut(s) 292, 596
BssAI RCCGGY 3 cut(s) 664, 760, 790
BssECI CCNNGG 5 cut(s) 9, 147, 180, 427, 675
BssMI GATC 2 cut(s) 472, 803
BssNI GRCGYC 2 cut(s) 5, 528
BssT1I CCWWGG 3 cut(s) 180, 427, 675
Bst4CI ACNGT 5 cut(s) 172, 241, 491, 733, 979
BstACI GRCGYC 2 cut(s) 5, 528
BstAPI GCANNNNNTGC 1 cut(s) 902
BstAUI TGTACA 2 cut(s) 778, 1132
BstDEI CTNAG 7 cut(s) 99, 221, 501, 534, 687, 724, 831
BstDSI CCRYGG 3 cut(s) 180, 427, 675
BstF5I GGATG 2 cut(s) 250, 406
BstKTI GATC 2 cut(s) 475, 806
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 472, 803
BstMWI GCNNNNNNNGC 6 cut(s) 11, 38, 902, 911, 931, 1079
BstNSI RCATGY 2 cut(s) 107, 902
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 1041
BstV1I GCAGC 5 cut(s) 31, 34, 889, 934, 946
BstV2I GAAGAC 2 cut(s) 173, 531
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 1 cut(s) 674
BtgI CCRYGG 3 cut(s) 180, 427, 675
BtsCI GGATG 2 cut(s) 250, 406
BtsIMutI CAGTG 2 cut(s) 229, 531
BveI ACCTGC 3 cut(s) 703, 967, 1087
CaiI CAGNNNCTG 6 cut(s) 440, 602, 731, 776, 971, 1025
Cfr10I RCCGGY 3 cut(s) 664, 760, 790
Cfr13I GGNCC 2 cut(s) 424, 1112
Csp6I GTAC 4 cut(s) 73, 599, 779, 1133
CspAI ACCGGT 3 cut(s) 664, 760, 790
CspCI CAANNNNNGTGG 4 cut(s) 717, 752, 1108, 1143
CviAII CATG 5 cut(s) 104, 181, 428, 676, 899
CviQI GTAC 4 cut(s) 73, 599, 779, 1133
DdeI CTNAG 7 cut(s) 99, 221, 501, 534, 687, 724, 831
DpnI GATC 2 cut(s) 474, 805
DpnII GATC 2 cut(s) 472, 803
EaeI YGGCCR 1 cut(s) 672
Eco130I CCWWGG 3 cut(s) 180, 427, 675
Eco47I GGWCC 2 cut(s) 424, 1112
Eco57I CTGAAG 6 cut(s) 53, 543, 624, 762, 948, 1047
Eco88I CYCGRG 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 1097
EcoT14I CCWWGG 3 cut(s) 180, 427, 675
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 3 cut(s) 180, 427, 675
FaeI CATG 5 cut(s) 107, 184, 431, 679, 902
FatI CATG 5 cut(s) 103, 180, 427, 675, 898
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 841
Fnu4HI GCNGC 5 cut(s) 20, 23, 903, 935, 948
FokI GGATG 2 cut(s) 257, 413
Fsp4HI GCNGC 5 cut(s) 20, 23, 903, 935, 948
GluI GCNGC 5 cut(s) 20, 23, 903, 935, 948
HaeIII GGCC 1 cut(s) 674
HapII CCGG 4 cut(s) 11, 665, 761, 791
Hin1I GRCGYC 2 cut(s) 5, 528
Hin1II CATG 5 cut(s) 107, 184, 431, 679, 902
HinfI GANTC 6 cut(s) 254, 404, 629, 647, 683, 773
HpaII CCGG 4 cut(s) 11, 665, 761, 791
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 109, 709, 1133
Hpy188III TCNNGA 7 cut(s) 98, 122, 251, 485, 557, 651, 1120
Hpy8I GTNNAC 3 cut(s) 109, 709, 1133
HpyAV CCTTC 4 cut(s) 77, 486, 859, 1028
HpyCH4III ACNGT 5 cut(s) 172, 241, 491, 733, 979
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 6 cut(s) 19, 59, 227, 698, 758, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 38, 902, 911, 931, 1079
HpyF3I CTNAG 7 cut(s) 99, 221, 501, 534, 687, 724, 831
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 2 cut(s) 5, 528
Hsp92II CATG 5 cut(s) 107, 184, 431, 679, 902
Kzo9I GATC 2 cut(s) 472, 803
LmnI GCTCC 3 cut(s) 88, 466, 955
Lsp1109I GCAGC 5 cut(s) 31, 34, 889, 934, 946
LweI GCATC 3 cut(s) 235, 703, 707
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 6 cut(s) 172, 235, 283, 508, 529, 640
MalI GATC 2 cut(s) 474, 805
MboI GATC 2 cut(s) 472, 803
MboII GAAGA 5 cut(s) 178, 536, 833, 1016, 1171
MfeI CAATTG 2 cut(s) 576, 849
MhlI GDGCHC 2 cut(s) 471, 1041
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 8 cut(s) 297, 310, 323, 576, 591, 849, 1097, 1106
MluNI TGGCCA 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 781
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 1097
MscI TGGCCA 1 cut(s) 674
MseI TTAA 3 cut(s) 855, 1068, 1166
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 937
MspI CCGG 4 cut(s) 11, 665, 761, 791
MspR9I CCNGG 1 cut(s) 11
MunI CAATTG 2 cut(s) 576, 849
MwoI GCNNNNNNNGC 6 cut(s) 11, 38, 902, 911, 931, 1079
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 3 cut(s) 180, 427, 675
NdeI CATATG 1 cut(s) 841
NdeII GATC 2 cut(s) 472, 803
NlaIII CATG 5 cut(s) 107, 184, 431, 679, 902
NlaIV GGNNCC 5 cut(s) 348, 663, 789, 1013, 1114
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 3 cut(s) 283, 529, 640
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 2 cut(s) 107, 902
PaqCI CACCTGC 1 cut(s) 1087
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 6 cut(s) 254, 404, 629, 647, 683, 773
PflMI CCANNNNNTGG 1 cut(s) 85
PinAI ACCGGT 3 cut(s) 664, 760, 790
PkrI GCNGC 5 cut(s) 21, 24, 904, 936, 949
PsiI TTATAA 1 cut(s) 296
PspN4I GGNNCC 5 cut(s) 348, 663, 789, 1013, 1114
PspPI GGNCC 2 cut(s) 424, 1112
PstNI CAGNNNCTG 6 cut(s) 440, 602, 731, 776, 971, 1025
RsaI GTAC 4 cut(s) 74, 600, 780, 1134
RsaNI GTAC 4 cut(s) 73, 599, 779, 1133
SaqAI TTAA 3 cut(s) 855, 1068, 1166
SatI GCNGC 5 cut(s) 20, 23, 903, 935, 948
Sau3AI GATC 2 cut(s) 472, 803
Sau96I GGNCC 2 cut(s) 424, 1112
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 471, 1041
SfaNI GCATC 3 cut(s) 235, 703, 707
SgrAI CRCCGGYG 2 cut(s) 760, 790
SinI GGWCC 2 cut(s) 424, 1112
SmlI CTYRAG 2 cut(s) 249, 557
SmoI CTYRAG 2 cut(s) 249, 557
Sse9I AATT 8 cut(s) 297, 310, 323, 576, 591, 849, 1097, 1106
SsiI CCGC 2 cut(s) 14, 937
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 3 cut(s) 180, 427, 675
TaaI ACNGT 5 cut(s) 172, 241, 491, 733, 979
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 612
TasI AATT 8 cut(s) 297, 310, 323, 576, 591, 849, 1097, 1106
TatI WGTACW 3 cut(s) 72, 778, 1132
TfiI GAWTC 6 cut(s) 254, 404, 629, 647, 683, 773
Tru1I TTAA 3 cut(s) 855, 1068, 1166
Tru9I TTAA 3 cut(s) 855, 1068, 1166
TscAI CASTG 2 cut(s) 229, 538
TseFI GTSAC 3 cut(s) 283, 529, 640
TseI GCWGC 5 cut(s) 19, 22, 902, 934, 947
Tsp45I GTSAC 3 cut(s) 283, 529, 640
TspDTI ATGAA 4 cut(s) 179, 630, 878, 1110
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 2 cut(s) 229, 538
Van91I CCANNNNNTGG 1 cut(s) 85
VpaK11BI GGWCC 2 cut(s) 424, 1112
XapI RAATTY 4 cut(s) 323, 591, 1097, 1106
XceI RCATGY 2 cut(s) 107, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 1167
XmnI GAANNNNTTC 1 cut(s) 1097
ZraI GACGTC 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.