MD10G1158600.v1.1

G3BP-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
24830722 .. 24834705
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1158600.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGGTGCAGCAAGCCCCAGCTGCAAGCCTCACTCCTACTGCCAACGTTGTCGGTAATGCCTTTGTTCTTCAGTACTACAATATCTTGGAACAATCCCCTGAGCTTGTTCATCGATTTTACCAAGATATTAGTAAGCTTGGTCGTCCGGGAGATGATGGGATCATGAGCATTACAACCACCATGGAGGAAATCAACAAGAAGATACTTGATTACGGAGAGCTCAGTGCAAATATCAAAACTGTGGATGCTCAGGAATCTTACAATGGAGGAGTATTTGTTCTTGTCACTGGGTATTTAACTGGAAAGGACCTTGTAAGGAAGAAATTTACTCAAAGTTTTTTCTTGGCACCACAAGACGTAGGCTACTTTGTTTTGAACGATGTCTTTAGATATGTTGAAGATTCCACCCCTGAAAATGAGGACAATGGATTGGTTGTTGACGTTGAAGTTGAACCTCCTATTACCCCCAAACATGATGCTCCTGCTTTGCAGGACAATCATGTCCCAGAGCCTGTGATTGCAGTGTCTGAGGATGTTGCCAAGGAGGAAGTAATCAAACCTTCTGAAAATGGAGTAGTTTCAGTTGAAGAGGAAGCAGTACCAGAACCTGAAGTTGTCAATGAAATTCCTGATGATTTGCAATTGGTGGTTAAAGTCGAAGCTGAATCTTACTCAAAAGTCGAAGCTGAATCCAACCCCAAAGTTGAGGCTGAGTTCAACTCCAAAGTTGAAGCTGAATCTAACTCTAAAGTTGAAGCACCGAAGAAGTCGTATGCCTCAATTCTTAAGAGCATGAAGGAGGGTACTGTCCCATTTTCTACTCCGGCACCCGTGAGGTCTGTCCCAAAGAAGCAGGAGCATCAAGCGACTGCTGCTCCAATATCTGCTTCAGTTTCAGAAACAGTATCCAGCACCAATGCCAGAGAAAATGGGAATTTAGAGCCCGAAGCTGAAGGTTACTCTATCTACATTAAAGGTCTGCCAATGGATTGTACAAATACTGTAATTGAGAATGAGTTCAAGAAATTCGGACAGATCAAGAAGAATGGTGTGCAAGTTAGAATCCTAAGGGGGTTCTGTTTTGGCTTTGTGGAATTTGAGGCTGCAAGTTCTGTGCAAAGTGCGATGGAGGCTTCACCCATCGTGATTGGTGGACGCCAAGTTTTTGTTGAGGAAAAGCGATCTACTCGAGGGAGGGGACGGTTTTCTGGAAGGGGAAACGGAAACGGGTACAGGACTGAGGGACCAAGAGGACGTGGAGGCTATGGAGGTGGTAGGGCTTATGGTCGTGGCGATTTCAATGGTGGTCGTGGCGATTTCAAGTCTGATTATGGAAGTAGGAGTAGCAATAGGGGAGGATCATCGGGCCGTGGAGGAGATGGATATCAGAGGTCTGACAATGGTGGTCGTGTGAATCGTTCTGGTGGGGTAGCGGTTAATGCAGCAGCGAAAACCACAGCACCACAGGTGTCTGCCTCAGCTTGA

Protein Analysis

495

Amino Acids

53.19

Weight (kDa)

5.14

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 17 - 131 2.3e-29 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 322 - 386 6.8e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010242)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 500
AccB1I GGYRCC 2 cut(s) 346, 826
AciI CCGC 1 cut(s) 1433
AclI AACGTT 1 cut(s) 45
AclWI GGATC 2 cut(s) 167, 1366
AcsI RAATTY 5 cut(s) 323, 624, 934, 1025, 1094
AcuI CTGAAG 4 cut(s) 53, 630, 873, 972
AcyI GRCGYC 1 cut(s) 1156
AfaI GTAC 5 cut(s) 74, 600, 805, 994, 1232
AflII CTTAAG 1 cut(s) 785
AjiI CACGTC 1 cut(s) 1256
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 9 cut(s) 20, 103, 136, 220, 662, 686, 734, 950, 1481
AluI AGCT 9 cut(s) 20, 103, 136, 220, 662, 686, 734, 950, 1481
Alw21I GWGCWC 1 cut(s) 222
AlwI GGATC 2 cut(s) 167, 1366
AlwNI CAGNNNCTG 3 cut(s) 512, 527, 608
Ama87I CYCGRG 1 cut(s) 1188
AoxI GGCC 1 cut(s) 1366
ApeKI GCWGC 6 cut(s) 7, 20, 872, 1103, 1442, 1445
ApoI RAATTY 5 cut(s) 323, 624, 934, 1025, 1094
Asp700I GAANNNNTTC 1 cut(s) 1016
AspS9I GGNCC 3 cut(s) 307, 1244, 1366
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 1128
AvaI CYCGRG 1 cut(s) 1188
AvaII GGWCC 2 cut(s) 307, 1244
AxyI CCTNAGG 1 cut(s) 1067
BanI GGYRCC 2 cut(s) 346, 826
BanII GRGCYC 2 cut(s) 222, 945
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 1477
BbvI GCAGC 6 cut(s) 7, 19, 859, 1090, 1454, 1457
BccI CCATC 4 cut(s) 149, 1120, 1148, 1373
BceAI ACGGC 1 cut(s) 1353
BciVI GTATCC 1 cut(s) 916
BcnI CCSGG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 785
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 6 cut(s) 8, 21, 873, 1104, 1443, 1446
BlsI GCNGC 6 cut(s) 9, 22, 874, 1105, 1444, 1447
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 2 cut(s) 307, 1244
BmeT110I CYCGRG 1 cut(s) 1188
BmgBI CACGTC 1 cut(s) 1256
BmgT120I GGNCC 3 cut(s) 307, 1244, 1366
BmiI GGNNCC 3 cut(s) 348, 828, 1245
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 235, 466, 868
BmuI ACTGGG 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 704, 736
Bpu10I CCTNAGC 3 cut(s) 99, 249, 1477
BpuMI CCSGG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 1383
BsaHI GRCGYC 1 cut(s) 1156
BsaJI CCNNGG 3 cut(s) 180, 540, 1369
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 859, 889
Bse1I ACTGG 2 cut(s) 292, 304
Bse21I CCTNAGG 1 cut(s) 1067
Bse8I GATNNNNATC 1 cut(s) 1383
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 180, 540, 1369
BseGI GGATG 2 cut(s) 250, 538
BseJI GATNNNNATC 1 cut(s) 1383
BseMII CTCAG 6 cut(s) 90, 235, 263, 519, 702, 1230
BseNI ACTGG 2 cut(s) 292, 304
BseRI GAGGAG 2 cut(s) 282, 1389
BseXI GCAGC 6 cut(s) 7, 19, 859, 1090, 1454, 1457
BseYI CCCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 1368
BshNI GGYRCC 2 cut(s) 346, 826
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 1188
BsiSI CCGG 2 cut(s) 146, 824
BslFI GGGAC 5 cut(s) 488, 794, 827, 1212, 1257
BsmFI GGGAC 5 cut(s) 488, 794, 827, 1212, 1257
BsnI GGCC 1 cut(s) 1368
BsoBI CYCGRG 1 cut(s) 1188
Bsp1286I GDGCHC 2 cut(s) 222, 945
Bsp1407I TGTACA 1 cut(s) 992
Bsp143I GATC 4 cut(s) 159, 1035, 1181, 1358
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 1 cut(s) 1433
BspANI GGCC 1 cut(s) 1368
BspCNI CTCAG 6 cut(s) 91, 234, 262, 520, 703, 1231
BspDI ATCGAT 1 cut(s) 112
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 348, 828, 1245
BspPI GGATC 2 cut(s) 167, 1366
BspT107I GGYRCC 2 cut(s) 346, 826
BspTI CTTAAG 1 cut(s) 785
BsrGI TGTACA 1 cut(s) 992
BsrI ACTGG 2 cut(s) 292, 304
BssECI CCNNGG 3 cut(s) 180, 540, 1369
BssMI GATC 4 cut(s) 159, 1035, 1181, 1358
BssNI GRCGYC 1 cut(s) 1156
BssT1I CCWWGG 2 cut(s) 180, 540
Bst4CI ACNGT 5 cut(s) 241, 808, 904, 1003, 1203
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 1156
BstAFI CTTAAG 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 992
BstC8I GCNNGC 2 cut(s) 12, 25
BstDEI CTNAG 8 cut(s) 99, 221, 249, 528, 711, 1067, 1239, 1477
BstDSI CCRYGG 2 cut(s) 180, 1369
BstF5I GGATG 2 cut(s) 250, 538
BstKTI GATC 4 cut(s) 162, 1038, 1184, 1361
BstMBI GATC 4 cut(s) 159, 1035, 1181, 1358
BstMWI GCNNNNNNNGC 4 cut(s) 20, 872, 1130, 1439
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 6 cut(s) 7, 19, 859, 1090, 1454, 1457
Bsu15I ATCGAT 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 1067
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 1 cut(s) 1368
BsuTUI ATCGAT 1 cut(s) 112
BtgI CCRYGG 2 cut(s) 180, 1369
BtgZI GCGATG 1 cut(s) 1139
BtrI CACGTC 1 cut(s) 1256
BtsCI GGATG 2 cut(s) 250, 538
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 229, 285, 528
Cac8I GCNNGC 2 cut(s) 12, 25
CaiI CAGNNNCTG 3 cut(s) 512, 527, 608
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 307, 1244, 1366
ClaI ATCGAT 1 cut(s) 112
CseI GACGC 1 cut(s) 1164
Csp6I GTAC 5 cut(s) 73, 599, 804, 993, 1231
CviAII CATG 5 cut(s) 163, 181, 473, 500, 793
CviQI GTAC 5 cut(s) 73, 599, 804, 993, 1231
DdeI CTNAG 8 cut(s) 99, 221, 249, 528, 711, 1067, 1239, 1477
DpnI GATC 4 cut(s) 161, 1037, 1183, 1360
DpnII GATC 4 cut(s) 159, 1035, 1181, 1358
DrdI GACNNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 180, 540
Eco24I GRGCYC 2 cut(s) 222, 945
Eco32I GATATC 1 cut(s) 1385
Eco47I GGWCC 2 cut(s) 307, 1244
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 4 cut(s) 53, 630, 873, 972
Eco81I CCTNAGG 1 cut(s) 1067
Eco88I CYCGRG 1 cut(s) 1188
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 307
EcoRV GATATC 1 cut(s) 1385
EcoT14I CCWWGG 2 cut(s) 180, 540
EcoT38I GRGCYC 2 cut(s) 222, 945
ErhI CCWWGG 2 cut(s) 180, 540
FaeI CATG 5 cut(s) 166, 184, 476, 503, 796
FaqI GGGAC 5 cut(s) 488, 794, 827, 1212, 1257
FatI CATG 5 cut(s) 162, 180, 472, 499, 792
Fnu4HI GCNGC 6 cut(s) 8, 21, 873, 1104, 1443, 1446
FokI GGATG 2 cut(s) 257, 545
FriOI GRGCYC 2 cut(s) 222, 945
Fsp4HI GCNGC 6 cut(s) 8, 21, 873, 1104, 1443, 1446
GluI GCNGC 6 cut(s) 8, 21, 873, 1104, 1443, 1446
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 1368
HapII CCGG 2 cut(s) 146, 824
HgaI GACGC 1 cut(s) 1164
Hin1I GRCGYC 1 cut(s) 1156
Hin1II CATG 5 cut(s) 166, 184, 476, 503, 796
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 7 cut(s) 254, 401, 665, 689, 737, 1062, 1414
HpaII CCGG 2 cut(s) 146, 824
HphI GGTGA 1 cut(s) 1128
Hpy166II GTNNAC 2 cut(s) 439, 1154
Hpy188I TCNGA 7 cut(s) 529, 565, 898, 1031, 1327, 1389, 1396
Hpy188III TCNNGA 7 cut(s) 163, 251, 629, 1021, 1039, 1144, 1209
Hpy8I GTNNAC 2 cut(s) 439, 1154
HpyAV CCTTC 4 cut(s) 570, 790, 947, 1206
HpyCH4III ACNGT 5 cut(s) 241, 808, 904, 1003, 1203
HpyCH4IV ACGT 4 cut(s) 45, 357, 441, 1255
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 872, 1130, 1439
HpyF3I CTNAG 8 cut(s) 99, 221, 249, 528, 711, 1067, 1239, 1477
HpySE526I ACGT 4 cut(s) 45, 357, 441, 1255
Hsp92I GRCGYC 1 cut(s) 1156
Hsp92II CATG 5 cut(s) 166, 184, 476, 503, 796
Kzo9I GATC 4 cut(s) 159, 1035, 1181, 1358
LmnI GCTCC 3 cut(s) 484, 856, 880
Lsp1109I GCAGC 6 cut(s) 7, 19, 859, 1090, 1454, 1457
LweI GCATC 3 cut(s) 235, 466, 868
MaeII ACGT 4 cut(s) 45, 357, 441, 1255
MaeIII GTNAC 2 cut(s) 283, 956
MalI GATC 4 cut(s) 161, 1037, 1183, 1360
MboI GATC 4 cut(s) 159, 1035, 1181, 1358
MboII GAAGA 7 cut(s) 59, 211, 331, 410, 599, 775, 1054
MfeI CAATTG 1 cut(s) 641
MhlI GDGCHC 2 cut(s) 222, 945
MluCI AATT 8 cut(s) 323, 624, 641, 780, 934, 1005, 1025, 1094
MmeI TCCRAC 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 1016
MseI TTAA 5 cut(s) 296, 651, 786, 972, 1437
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 2 cut(s) 146, 824
MspR9I CCNGG 1 cut(s) 147
MunI CAATTG 1 cut(s) 641
MwoI GCNNNNNNNGC 4 cut(s) 20, 872, 1130, 1439
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 159, 1035, 1181, 1358
NlaIII CATG 5 cut(s) 166, 184, 476, 503, 796
NlaIV GGNNCC 3 cut(s) 348, 828, 1245
NmuCI GTSAC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 1188
PagI TCATGA 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 1414
PdmI GAANNNNTTC 1 cut(s) 1016
PfeI GAWTC 7 cut(s) 254, 401, 665, 689, 737, 1062, 1414
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 6 cut(s) 9, 22, 874, 1105, 1444, 1447
PpuMI RGGWCCY 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 3 cut(s) 348, 828, 1245
PspPI GGNCC 3 cut(s) 307, 1244, 1366
PspPPI RGGWCCY 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 1188
PstNI CAGNNNCTG 3 cut(s) 512, 527, 608
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 5 cut(s) 74, 600, 805, 994, 1232
RsaNI GTAC 5 cut(s) 73, 599, 804, 993, 1231
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 5 cut(s) 296, 651, 786, 972, 1437
SatI GCNGC 6 cut(s) 8, 21, 873, 1104, 1443, 1446
Sau3AI GATC 4 cut(s) 159, 1035, 1181, 1358
Sau96I GGNCC 3 cut(s) 307, 1244, 1366
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 2 cut(s) 222, 945
SfaNI GCATC 3 cut(s) 235, 466, 868
Sfr274I CTCGAG 1 cut(s) 1188
SinI GGWCC 2 cut(s) 307, 1244
SlaI CTCGAG 1 cut(s) 1188
SmlI CTYRAG 2 cut(s) 785, 1188
SmoI CTYRAG 2 cut(s) 785, 1188
Sse9I AATT 8 cut(s) 323, 624, 641, 780, 934, 1005, 1025, 1094
SsiI CCGC 1 cut(s) 1433
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 2 cut(s) 180, 540
TaaI ACNGT 5 cut(s) 241, 808, 904, 1003, 1203
TaiI ACGT 4 cut(s) 48, 360, 444, 1258
TaqI TCGA 4 cut(s) 112, 657, 681, 1189
TasI AATT 8 cut(s) 323, 624, 641, 780, 934, 1005, 1025, 1094
TatI WGTACW 2 cut(s) 72, 992
TfiI GAWTC 7 cut(s) 254, 401, 665, 689, 737, 1062, 1414
Tru1I TTAA 5 cut(s) 296, 651, 786, 972, 1437
Tru9I TTAA 5 cut(s) 296, 651, 786, 972, 1437
TscAI CASTG 3 cut(s) 229, 292, 528
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 6 cut(s) 7, 20, 872, 1103, 1442, 1445
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 98, 636, 809
TspGWI ACGGA 2 cut(s) 228, 1236
TspRI CASTG 3 cut(s) 229, 292, 528
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 2 cut(s) 307, 1244
XapI RAATTY 5 cut(s) 323, 624, 934, 1025, 1094
XhoI CTCGAG 1 cut(s) 1188
XmnI GAANNNNTTC 1 cut(s) 1016
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.