MD05G1171500.v1.1

Mitochondrial import inner membrane translocase subunit Tim17 Tim22 Tim23 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015193
Physical Location & Seq
Forward (+)
30058117 .. 30059963
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1171500.v1.1.491

Sequence Viewer

Length: 588 bp
ATGGCTTCCGACGATCCCAAAGCCGTAGAAGCAGAGCCACCGCCGTCGTCTTGGAAGGAGCGCATCGTCTTTCCCACTCTCCTAGCTGGGATTCTCGGTGGAGGAGCTGGGTTGGTCTCCAAGCATCGAAAAGTCGTGGGTCTCCCGACCAGTTGCGCCACTTATGCTGCCAATTTCGCCATTGTTACGGCTTGTTACTGCGGGGCTCGTGAATATGTGGGAGTAACTCGAAAAACTGGACCTAATGATCTGGTGAACTCTGCAATTGCTGGGTTTGGCACTGGTGCTATTCTTGGGCGTCTTCAGGGGGGTCGAATTGGTGCTGTCCGCTACTCAATCATCTTTACTCTTGTTGGGACAACTGTGGATTATGCTACGATTAGACTAAGACCTGTGTTAAAGAGCTACAAAAAATCTATGCTTGGGAGTAATGACGGGTCACAGAAGAATGACGGTTGGTTGAAAATGCCCGACTGGTCTCCTATCAAAGTACTTGACGAGGAAGCGCTCGCTGCAAAACATGCTCGCGAACAAAAGATGTACGCACAGAGGGCAGCACTTGGTAACCTAAGCAAAAAAGAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

196

Amino Acids

20.79

Weight (kDa)

9.63

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 48 - 116 1e-05 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25120
fragaria_vesca FvH4_2g18530
malus_domestica MD05G1171500.v1.1 MD10G1159700.v1.1
prunus_persica Prupe.8G198800_v2.0.a1
pyrus_communis pycom05g15820 pycom10g13790
rosa_chinensis RchiOBHm_Chr6g0284091
rosa_laevigata RLG00000012770
rosa_roxburghii Rroxscaffold_7G00184940
rosa_rugosa Rorug06G0160600
rosa_samantha Rh6AG273400 Rh6BG274100 Rh6CG275500 Rh6DG268600
rosa_wichuraiana Rw6G023530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 528
AciI CCGC 3 cut(s) 41, 201, 328
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 2 cut(s) 492, 542
AfeI AGCGCT 1 cut(s) 507
AgsI TTSAA 1 cut(s) 463
AluBI AGCT 3 cut(s) 86, 107, 405
AluI AGCT 3 cut(s) 86, 107, 405
Alw26I GTCTC 3 cut(s) 121, 146, 483
AlwI GGATC 1 cut(s) 8
Aor51HI AGCGCT 1 cut(s) 507
ApeKI GCWGC 3 cut(s) 167, 512, 554
AspLEI GCGC 3 cut(s) 63, 158, 508
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 208
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 154, 499, 566
BceAI ACGGC 3 cut(s) 8, 28, 204
BcoDI GTCTC 3 cut(s) 121, 146, 483
BfaI CTAG 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 509
BisI GCNGC 3 cut(s) 168, 513, 555
BlsI GCNGC 3 cut(s) 169, 514, 556
BmcAI AGTACT 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmsI GCATC 2 cut(s) 72, 133
BpiI GAAGAC 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 298
BsaI GGTCTC 3 cut(s) 121, 146, 483
Bse1I ACTGG 4 cut(s) 150, 241, 286, 479
BseNI ACTGG 4 cut(s) 150, 241, 286, 479
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 154, 499, 566
BseYI CCCAGC 3 cut(s) 86, 107, 269
Bsh1236I CGCG 1 cut(s) 528
BslFI GGGAC 1 cut(s) 370
BsmAI GTCTC 3 cut(s) 121, 146, 483
BsmFI GGGAC 1 cut(s) 370
Bso31I GGTCTC 3 cut(s) 121, 146, 483
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 13, 247
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 3 cut(s) 41, 201, 328
BspFNI CGCG 1 cut(s) 528
BspPI GGATC 1 cut(s) 8
BspTNI GGTCTC 3 cut(s) 121, 146, 483
BsrI ACTGG 4 cut(s) 150, 241, 286, 479
BssMI GATC 2 cut(s) 13, 247
BssNI GRCGYC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 364, 455
BstACI GRCGYC 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 510, 526
BstDEI CTNAG 2 cut(s) 386, 569
BstEII GGTNACC 1 cut(s) 563
BstFNI CGCG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 3 cut(s) 63, 158, 508
BstKTI GATC 2 cut(s) 16, 250
BstMAI GTCTC 3 cut(s) 121, 146, 483
BstMBI GATC 2 cut(s) 13, 247
BstMWI GCNNNNNNNGC 6 cut(s) 29, 164, 176, 512, 521, 551
BstNSI RCATGY 1 cut(s) 524
BstPI GGTNACC 1 cut(s) 563
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 154, 499, 566
BstV2I GAAGAC 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 279
BtuMI TCGCGA 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 510, 526
CfoI GCGC 3 cut(s) 63, 158, 508
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 491, 541
CviAII CATG 1 cut(s) 521
CviJI RGCY 8 cut(s) 5, 23, 37, 86, 107, 191, 206, 405
CviKI_1 RGCY 8 cut(s) 5, 23, 37, 86, 107, 191, 206, 405
CviQI GTAC 2 cut(s) 491, 541
DdeI CTNAG 2 cut(s) 386, 569
DpnI GATC 2 cut(s) 15, 249
DpnII GATC 2 cut(s) 13, 247
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 3 cut(s) 121, 146, 483
Eco47I GGWCC 1 cut(s) 239
Eco47III AGCGCT 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 287
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 1 cut(s) 524
FaiI YATR 5 cut(s) 165, 216, 372, 419, 522
FaqI GGGAC 1 cut(s) 370
FatI CATG 1 cut(s) 520
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 168, 513, 555
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 168, 513, 555
FspBI CTAG 1 cut(s) 83
GlaI GCGC 3 cut(s) 62, 157, 507
GluI GCNGC 3 cut(s) 168, 513, 555
GsaI CCCAGC 3 cut(s) 90, 111, 273
HaeII RGCGCY 1 cut(s) 509
HgaI GACGC 1 cut(s) 287
HhaI GCGC 3 cut(s) 63, 158, 508
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 3 cut(s) 61, 156, 506
HinP1I GCGC 3 cut(s) 61, 156, 506
HinfI GANTC 2 cut(s) 91, 581
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 145, 209, 527
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 2 cut(s) 14, 49
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 364, 455
HpyCH4V TGCA 2 cut(s) 263, 515
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 164, 176, 512, 521, 551
HpyF3I CTNAG 2 cut(s) 386, 569
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 3 cut(s) 61, 156, 506
Kzo9I GATC 2 cut(s) 13, 247
LmnI GCTCC 2 cut(s) 58, 104
Lsp1109I GCAGC 3 cut(s) 154, 499, 566
LweI GCATC 2 cut(s) 72, 133
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 5 cut(s) 184, 194, 223, 438, 563
MalI GATC 2 cut(s) 15, 249
MboI GATC 2 cut(s) 13, 247
MboII GAAGA 2 cut(s) 293, 457
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 172, 264, 315
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 95, 493, 543
MseI TTAA 1 cut(s) 398
MunI CAATTG 1 cut(s) 264
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 6 cut(s) 29, 164, 176, 512, 521, 551
NdeII GATC 2 cut(s) 13, 247
NlaIII CATG 1 cut(s) 524
NmuCI GTSAC 1 cut(s) 438
NruI TCGCGA 1 cut(s) 528
NspI RCATGY 1 cut(s) 524
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 169, 514, 556
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 3 cut(s) 86, 107, 269
PspPI GGNCC 1 cut(s) 239
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 2 cut(s) 492, 542
RsaNI GTAC 2 cut(s) 491, 541
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 3 cut(s) 168, 513, 555
Sau3AI GATC 2 cut(s) 13, 247
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 492
SduI GDGCHC 1 cut(s) 208
SetI ASST 6 cut(s) 88, 109, 244, 394, 407, 570
SfaNI GCATC 2 cut(s) 72, 133
SinI GGWCC 1 cut(s) 239
Sse9I AATT 3 cut(s) 172, 264, 315
SsiI CCGC 3 cut(s) 41, 201, 328
SspMI CTAG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 364, 455
TaqI TCGA 3 cut(s) 127, 229, 313
TasI AATT 3 cut(s) 172, 264, 315
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 3 cut(s) 167, 512, 554
Tsp45I GTSAC 1 cut(s) 438
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 239
XceI RCATGY 1 cut(s) 524
XspI CTAG 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.