MD05G1193600.v1.1

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012657
Physical Location & Seq
Reverse (-)
32159766 .. 32160507
742 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1193600.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGCAGGATCAGGAACTGTTTTCTCTTCTGCTTTGGAAGGGATGAATCATGTTAAATCCAAATCCGGCGAGATGCTTGCCAAACCTTTCTTGGATGTGTGCAAACACTTGCTGCCTGTTTTAGACAAGTTTGGAGCTGCCTTTGCCCCTGTGAAATCTGATATTGGTAATAACATATCGAGGTTGGATTCTAAGTATTCGTCGAGCCCGTCAGAATTTAACCTCTTGTATAGCATAGTTCGAGTTGAGATTGAAGCGAAAACTGCGAAATCCTCATCTAGTTGCACAAATGCTCTACTCTGGTTAACAAGGTATGGCTATGGATTACTTGGTGGAGCTGTTTCGGAATCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

119

Amino Acids

12.55

Weight (kDa)

8.58

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 27 - 104 1.6e-21 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 215
AgsI TTSAA 1 cut(s) 254
AluBI AGCT 2 cut(s) 137, 338
AluI AGCT 2 cut(s) 137, 338
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 112, 137
ApoI RAATTY 1 cut(s) 215
BanII GRGCYC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 99, 124
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BfaI CTAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 113, 138
BlsI GCNGC 2 cut(s) 114, 139
BmsI GCATC 1 cut(s) 63
BseGI GGATG 2 cut(s) 48, 100
BseXI GCAGC 2 cut(s) 99, 124
BsiSI CCGG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 8
BspPI GGATC 1 cut(s) 16
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 48, 100
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 143, 263
BstV1I GCAGC 2 cut(s) 99, 124
BtsCI GGATG 2 cut(s) 48, 100
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 17
CviAII CATG 2 cut(s) 50, 354
CviJI RGCY 4 cut(s) 137, 207, 318, 338
CviKI_1 RGCY 4 cut(s) 137, 207, 318, 338
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 2 cut(s) 53, 357
FaiI YATR 7 cut(s) 51, 176, 231, 236, 315, 321, 355
FatI CATG 2 cut(s) 49, 353
Fnu4HI GCNGC 2 cut(s) 113, 138
FokI GGATG 2 cut(s) 55, 107
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 113, 138
FspBI CTAG 1 cut(s) 279
GluI GCNGC 2 cut(s) 113, 138
HapII CCGG 1 cut(s) 66
Hin1II CATG 2 cut(s) 53, 357
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 3 cut(s) 46, 188, 347
HpaI GTTAAC 1 cut(s) 306
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 3 cut(s) 160, 214, 346
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 102, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 263
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 2 cut(s) 53, 357
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 134, 335
LpnPI CCDG 4 cut(s) 79, 129, 162, 286
Lsp1109I GCAGC 2 cut(s) 99, 124
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 279
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 174, 233, 283
MseI TTAA 3 cut(s) 54, 219, 305
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 143, 263
NdeII GATC 1 cut(s) 8
NlaIII CATG 2 cut(s) 53, 357
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 3 cut(s) 46, 188, 347
PkrI GCNGC 2 cut(s) 114, 139
PstNI CAGNNNCTG 1 cut(s) 17
SaqAI TTAA 3 cut(s) 54, 219, 305
SatI GCNGC 2 cut(s) 113, 138
Sau3AI GATC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 209
SetI ASST 6 cut(s) 88, 139, 185, 225, 314, 340
SfaNI GCATC 1 cut(s) 63
Sse9I AATT 1 cut(s) 215
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 3 cut(s) 179, 203, 241
TasI AATT 1 cut(s) 215
TfiI GAWTC 3 cut(s) 46, 188, 347
Tru1I TTAA 3 cut(s) 54, 219, 305
Tru9I TTAA 3 cut(s) 54, 219, 305
TseI GCWGC 2 cut(s) 112, 137
TspDTI ATGAA 1 cut(s) 59
XapI RAATTY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.