Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012657

Physical Location & Seq

Genomic Coordinates Reverse (-)

18865048 .. 18866179

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAGGAACAGGAACTGTTTTCGCTTCTGCTCTGGAAGGGATGAACCACGTTAAATCCGACTCCAGCGAGATGCTTGCCAAGCCTTTCTTGGATGTCTGCAACCACTTGCTGCCTGTTTTAGATAAGTTTGGAGCTGCCTTCGCACCTGTGAAATCTGATATTGGTAATAACATATCGAGGTTGGATTCGAAGTATTCGTCGAGCCCGTCAGAGTTTAACCATTTGTACAGCATAATTCGAGTTGAGATTGAAGCGAAAACTGCGAAATCCTCATCTAGTTGCACGAATGCTCTACTCTGGCTAACAAGGGCTATGGATTACTTGGTGGAGCTGTTTCGCAATCTGCATGATAATCCGGACTGGCCAATGTCGAAGGCTTGTAACGAAGCGTACGGCAAGACGCTGAAGAAATGGCATAACTGGCTGGCTAGCTCAAGTTTTAGTGTTGGGATTAAGCTTGCTCCGGAGAGGAAGAAATTCATGGACATATTAGGTGGTGAAACTCCTGAATTAAACTCTGATATGGGGAAATTCTGCGCGAACTTCTCTCCGCTCCTCGAAGAGAATCATAGGTTCTTGGACTCTGTTGGATTGGACAGTTTGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

205

Amino Acids

22.58

Weight (kDa)

6.3

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012657)

Species	Orthologous Gene IDs
malus_domestica	MD05G1193600.v1.1 MD10G1180300.v1.1
prunus_persica	Prupe.8G220300_v2.0.a1 Prupe.8G220300_v2.0.a1
pyrus_communis	pycom05g18100 pycom10g15630
rosa_chinensis	RchiOBHm_Chr6g0287551
rosa_laevigata	RLG00000012485
rosa_multiflora	Rmu_sc0004974.1_g000007 Rmu_sc0007029.1_g000009
rosa_roxburghii	Rroxscaffold_7G00180950 Rroxscaffold_7G00181380
rosa_rugosa	Rorug06G0189000 Rorug06G0189100
rosa_samantha	Rh6AG300300 Rh6BG305700 Rh6CG303800 Rh6CG314100
rosa_wichuraiana	Rw6G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	556
AccII	CGCG	1 cut(s)	542
AccIII	TCCGGA	2 cut(s)	358, 466
AciI	CCGC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	479, 533
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	230, 395
AgsI	TTSAA	2 cut(s)	254, 607
AluBI	AGCT	5 cut(s)	137, 334, 435, 460, 611
AluI	AGCT	5 cut(s)	137, 334, 435, 460, 611
AlwNI	CAGNNNCTG	1 cut(s)	17
Aor13HI	TCCGGA	2 cut(s)	358, 466
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	112, 137
ApoI	RAATTY	2 cut(s)	479, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	99, 124
BceAI	ACGGC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BfaI	CTAG	2 cut(s)	279, 432
BisI	GCNGC	2 cut(s)	113, 138
BlsI	GCNGC	2 cut(s)	114, 139
BmsI	GCATC	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	421
BsaWI	WCCGGW	2 cut(s)	358, 466
Bse1I	ACTGG	2 cut(s)	368, 428
BseAI	TCCGGA	2 cut(s)	358, 466
BseGI	GGATG	2 cut(s)	48, 100
BseNI	ACTGG	2 cut(s)	368, 428
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	99, 124
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	359, 467
BsiWI	CGTACG	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	367
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp13I	TCCGGA	2 cut(s)	358, 466
Bsp1407I	TGTACA	1 cut(s)	228
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	367
BspEI	TCCGGA	2 cut(s)	358, 466
BspFNI	CGCG	1 cut(s)	542
BspOI	GCTAGC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	556
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	368, 428
Bst4CI	ACNGT	2 cut(s)	19, 602
Bst6I	CTCTTC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	78, 429, 433, 462
BstF5I	GGATG	2 cut(s)	48, 100
BstFNI	CGCG	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	542
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 143, 263, 424
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	99, 124
BsuRI	GGCC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	48, 100
Cac8I	GCNNGC	4 cut(s)	78, 429, 433, 462
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	542
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	229, 394
CviAII	CATG	2 cut(s)	350, 484
CviQI	GTAC	2 cut(s)	229, 394
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	209
FaeI	CATG	2 cut(s)	353, 487
FaiI	YATR	9 cut(s)	176, 236, 317, 351, 420, 485, 491, 527, 573
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	2 cut(s)	349, 483
Fnu4HI	GCNGC	2 cut(s)	113, 138
FokI	GGATG	2 cut(s)	55, 107
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	113, 138
FspBI	CTAG	2 cut(s)	279, 432
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	2 cut(s)	113, 138
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	359, 467
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	2 cut(s)	353, 487
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HindIII	AAGCTT	2 cut(s)	458, 609
HinfI	GANTC	4 cut(s)	62, 188, 568, 584
HpaII	CCGG	2 cut(s)	359, 467
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	61, 160, 214, 523
Hpy188III	TCNNGA	4 cut(s)	35, 359, 467, 509
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	32, 151, 370
HpyCH4III	ACNGT	2 cut(s)	19, 602
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	102, 285, 349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 143, 263, 424
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	353, 487
HspAI	GCGC	1 cut(s)	540
Kpn2I	TCCGGA	2 cut(s)	358, 466
LmnI	GCTCC	4 cut(s)	134, 331, 469, 561
Lsp1109I	GCAGC	2 cut(s)	99, 124
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	2 cut(s)	279, 432
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	383
MbiI	CCGCTC	1 cut(s)	556
MboII	GAAGA	3 cut(s)	421, 487, 575
MhlI	GDGCHC	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	4 cut(s)	237, 479, 512, 533
MluNI	TGGCCA	1 cut(s)	367
MlyI	GAGTC	2 cut(s)	56, 578
MmeI	TCCRAC	3 cut(s)	84, 165, 571
MnlI	CCTC	4 cut(s)	174, 283, 465, 569
Mox20I	TGGCCA	1 cut(s)	367
MroI	TCCGGA	2 cut(s)	358, 466
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	4 cut(s)	54, 219, 456, 515
Msp20I	TGGCCA	1 cut(s)	367
MspI	CCGG	2 cut(s)	359, 467
Mva1269I	GAATGC	1 cut(s)	295
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	4 cut(s)	82, 143, 263, 424
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	2 cut(s)	353, 487
NspV	TTCGAA	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 197, 206
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	188, 568
Pfl23II	CGTACG	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	114, 139
PleI	GAGTC	2 cut(s)	56, 578
PpsI	GAGTC	2 cut(s)	56, 578
PspLI	CGTACG	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	230, 395
RsaNI	GTAC	2 cut(s)	229, 394
SaqAI	TTAA	4 cut(s)	54, 219, 456, 515
SatI	GCNGC	2 cut(s)	113, 138
SchI	GAGTC	2 cut(s)	56, 578
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	4 cut(s)	237, 479, 512, 533
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	2 cut(s)	279, 432
TaaI	ACNGT	2 cut(s)	19, 602
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	6 cut(s)	179, 191, 203, 241, 374, 561
TasI	AATT	4 cut(s)	237, 479, 512, 533
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	188, 568
Tru1I	TTAA	4 cut(s)	54, 219, 456, 515
Tru9I	TTAA	4 cut(s)	54, 219, 456, 515
TseI	GCWGC	2 cut(s)	112, 137
TspDTI	ATGAA	2 cut(s)	59, 472
XapI	RAATTY	2 cut(s)	479, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	279, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.