Rroxscaffold_7G00181380

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012657
Physical Location & Seq
Forward (+)
20524898 .. 20526599
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181380.1

Sequence Viewer

Length: 522 bp
ATGGCGGTATCTGTTTTCACTTCCGCTTTGGAAGGGATGAAGCATGTTAAATCTGAAAATGGAGAGATGCTCACCAAGCCTTTCTTGGATGTATGCAAACAATTATTACCCGTTTTAGATAAGTTTGGAGCAGCACTTTCACCCGTCAAATCTGATGTTGCTAACAATATATCGAGGCTGGAAACCAAGTACTCTTCCAACCCATCAGAATTCAATCTATTGGGTATGGACTACTTGGTGGAGCTGTTTCGAAATCTACATGATAATCCAGACTGGCCACTGTCAAAAGCTTGCACAGAAGCCTACAACAAGACATTGAAAAAATGGCATAATTGGATAGCTAGCTCTGGTTTTAGTGTTGGAATTAAGCTTGCTCCTGAGAGGAAGAAATTCATGGAGATAATAGGCGAAACGGCTGATTTGACTTCTGACATTCAGAAGTTCTGCACAAATTTCTCTCCACTTCTCGAAGAGAATCATAAGTTCCTTGACTCTGTGGGAATGGACAATCTCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

6.09

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 24 - 74 4.5e-11 Glycolipid transfer protein (GLTP)
GLTP PF08718 75 - 136 1.7e-17 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 24
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 3 cut(s) 209, 389, 451
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 214, 319
AluBI AGCT 6 cut(s) 244, 290, 341, 345, 370, 518
AluI AGCT 6 cut(s) 244, 290, 341, 345, 370, 518
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 3 cut(s) 209, 389, 451
Asp700I GAANNNNTTC 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 64, 132
AsuII TTCGAA 1 cut(s) 250
AsuNHI GCTAGC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 277
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 429
BfaI CTAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 191
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu14I TTCGAA 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 42, 94
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 430
BshFI GGCC 1 cut(s) 277
BsnI GGCC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 250
BspACI CCGC 2 cut(s) 5, 24
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 370
BspOI GCTAGC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 2 cut(s) 199, 465
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 3 cut(s) 292, 343, 372
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 42, 94
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 42, 94
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 3 cut(s) 292, 343, 372
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 44, 260, 394
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 199, 465
EarI CTCTTC 2 cut(s) 199, 465
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 3 cut(s) 47, 263, 397
FaiI YATR 8 cut(s) 45, 94, 170, 227, 261, 330, 395, 480
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 3 cut(s) 43, 259, 393
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 49, 101
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 277
Hin1II CATG 3 cut(s) 47, 263, 397
HindIII AAGCTT 3 cut(s) 288, 368, 516
HinfI GANTC 2 cut(s) 475, 491
HphI GGTGA 2 cut(s) 64, 132
Hpy188I TCNGA 5 cut(s) 55, 154, 208, 430, 438
Hpy188III TCNNGA 3 cut(s) 269, 377, 467
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 96, 294, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 3 cut(s) 47, 263, 397
LmnI GCTCC 3 cut(s) 128, 241, 379
LpnPI CCDG 5 cut(s) 164, 259, 282, 333, 390
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 342
MboII GAAGA 3 cut(s) 186, 397, 482
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 6 cut(s) 101, 209, 331, 363, 389, 451
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 222, 340
MnlI CCTC 2 cut(s) 168, 375
Mox20I TGGCCA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 1 cut(s) 277
MseI TTAA 2 cut(s) 48, 366
Msp20I TGGCCA 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 76
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 3 cut(s) 47, 263, 397
NspI RCATGY 1 cut(s) 47
NspV TTCGAA 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 48, 366
SatI GCNGC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 485
SetI ASST 6 cut(s) 246, 292, 343, 347, 372, 520
SfaNI GCATC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 250
Sse9I AATT 6 cut(s) 101, 209, 331, 363, 389, 451
SsiI CCGC 2 cut(s) 5, 24
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 282
TaqI TCGA 3 cut(s) 173, 250, 468
TasI AATT 6 cut(s) 101, 209, 331, 363, 389, 451
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 2 cut(s) 48, 366
Tru9I TTAA 2 cut(s) 48, 366
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 53, 382
TspRI CASTG 1 cut(s) 285
XapI RAATTY 3 cut(s) 209, 389, 451
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.