MD10G1180300.v1.1

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012657
Physical Location & Seq
Reverse (-)
27364263 .. 27365397
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1180300.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGCAGGATCAGGAACTGTTTTCGCTTCTGCTCTGGAAGGGATGAACCACGTTAAATCCGACTCCGGCGAGATGCTTGCCAAGCCTTTCTTGGATGTCTGCAACCACTTGCTGCCTGTTTTAGATAAGTTTGGAGCTGCCTGCGCACCTGTGAAATCTGATATTGGTAATAACATATCGAGGTTGGATTCTAAGTATTCGTCGAGCCCGTCAGAGTTTAACCTCTTGTACAGCATAGTTCGAGTTGAGATTGAAGCGAAAACTGCGAAATGCTCATCTAGTTGCACAAATGCTCTACTCTGGCTAACAAGGGCTATGGATTACTTGGTGGAGCTGTTTCGCAATCTGCATGATAATCCGGACTGGCCAATGTCGAAGGCTTGTAACGAAGCGTACGGCAAGACGCTGAAGAAATGGCACAACTGGCTGGCTAGCTCAAGTTTTAGTGTTGGGATTAAGCTTGCTCCGGAGAGGAAGAAATTCATGGACATATTAGGTGGTGAAACTCCTGAATTAAACTCTGATATGGGGAAATTCTGCAGGAACTTCTCTCCGCTCCTCGAAGAAAATCATAAGTTCTTGGACTCTGTTGGATTGGACAGTTTGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

205

Amino Acids

22.53

Weight (kDa)

6.52

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 27 - 166 2.9e-44 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 145
AccBSI CCGCTC 1 cut(s) 556
AccIII TCCGGA 2 cut(s) 358, 466
AciI CCGC 1 cut(s) 554
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 2 cut(s) 479, 533
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 230, 395
AgsI TTSAA 2 cut(s) 254, 607
AluBI AGCT 5 cut(s) 137, 334, 435, 460, 611
AluI AGCT 5 cut(s) 137, 334, 435, 460, 611
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 17
Aor13HI TCCGGA 2 cut(s) 358, 466
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 112, 137
ApoI RAATTY 2 cut(s) 479, 533
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 512
AsuNHI GCTAGC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 367
BanII GRGCYC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 99, 124
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BfaI CTAG 2 cut(s) 279, 432
BfmI CTRYAG 1 cut(s) 538
BisI GCNGC 2 cut(s) 113, 138
BlsI GCNGC 2 cut(s) 114, 139
BmsI GCATC 1 cut(s) 63
BmtI GCTAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 421
BsaWI WCCGGW 2 cut(s) 358, 466
Bse1I ACTGG 2 cut(s) 368, 428
BseAI TCCGGA 2 cut(s) 358, 466
BseGI GGATG 2 cut(s) 48, 100
BseNI ACTGG 2 cut(s) 368, 428
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 2 cut(s) 99, 124
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 3 cut(s) 66, 359, 467
BsiWI CGTACG 1 cut(s) 393
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 2 cut(s) 358, 466
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 1 cut(s) 554
BspANI GGCC 1 cut(s) 367
BspEI TCCGGA 2 cut(s) 358, 466
BspMAI CTGCAG 1 cut(s) 542
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 368, 428
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 19, 602
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 5 cut(s) 78, 142, 429, 433, 462
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 48, 100
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 4 cut(s) 82, 143, 263, 424
BstSFI CTRYAG 1 cut(s) 538
BstV1I GCAGC 2 cut(s) 99, 124
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 48, 100
Cac8I GCNNGC 5 cut(s) 78, 142, 429, 433, 462
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 146
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 229, 394
CviAII CATG 2 cut(s) 350, 484
CviQI GTAC 2 cut(s) 229, 394
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 2 cut(s) 353, 487
FaiI YATR 8 cut(s) 176, 236, 317, 351, 485, 491, 527, 573
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 2 cut(s) 349, 483
Fnu4HI GCNGC 2 cut(s) 113, 138
FokI GGATG 2 cut(s) 55, 107
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 113, 138
FspBI CTAG 2 cut(s) 279, 432
FspI TGCGCA 1 cut(s) 145
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 113, 138
HaeIII GGCC 1 cut(s) 367
HapII CCGG 3 cut(s) 66, 359, 467
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 353, 487
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 2 cut(s) 458, 609
HinfI GANTC 3 cut(s) 62, 188, 584
HpaII CCGG 3 cut(s) 66, 359, 467
HphI GGTGA 1 cut(s) 512
Hpy188I TCNGA 4 cut(s) 61, 160, 214, 523
Hpy188III TCNNGA 5 cut(s) 12, 35, 359, 467, 509
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 32, 370
HpyCH4III ACNGT 2 cut(s) 19, 602
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 102, 285, 349, 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 143, 263, 424
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 353, 487
HspAI GCGC 1 cut(s) 144
Kpn2I TCCGGA 2 cut(s) 358, 466
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 134, 331, 469, 561
Lsp1109I GCAGC 2 cut(s) 99, 124
LweI GCATC 1 cut(s) 63
MaeI CTAG 2 cut(s) 279, 432
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 383
MalI GATC 1 cut(s) 10
MbiI CCGCTC 1 cut(s) 556
MboI GATC 1 cut(s) 8
MboII GAAGA 3 cut(s) 421, 487, 575
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 3 cut(s) 479, 512, 533
MluNI TGGCCA 1 cut(s) 367
MlyI GAGTC 2 cut(s) 56, 578
MmeI TCCRAC 3 cut(s) 84, 165, 571
MnlI CCTC 4 cut(s) 174, 233, 465, 569
Mox20I TGGCCA 1 cut(s) 367
MroI TCCGGA 2 cut(s) 358, 466
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 367
MseI TTAA 4 cut(s) 54, 219, 456, 515
Msp20I TGGCCA 1 cut(s) 367
MspI CCGG 3 cut(s) 66, 359, 467
MwoI GCNNNNNNNGC 4 cut(s) 82, 143, 263, 424
NdeII GATC 1 cut(s) 8
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 2 cut(s) 353, 487
NsbI TGCGCA 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 206
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 188
Pfl23II CGTACG 1 cut(s) 393
PkrI GCNGC 2 cut(s) 114, 139
PleI GAGTC 2 cut(s) 56, 578
PpsI GAGTC 2 cut(s) 56, 578
PspLI CGTACG 1 cut(s) 393
PstI CTGCAG 1 cut(s) 542
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 230, 395
RsaNI GTAC 2 cut(s) 229, 394
SaqAI TTAA 4 cut(s) 54, 219, 456, 515
SatI GCNGC 2 cut(s) 113, 138
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 2 cut(s) 56, 578
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 3 cut(s) 479, 512, 533
SsiI CCGC 1 cut(s) 554
SspMI CTAG 2 cut(s) 279, 432
TaaI ACNGT 2 cut(s) 19, 602
TaiI ACGT 1 cut(s) 54
TaqI TCGA 5 cut(s) 179, 203, 241, 374, 561
TasI AATT 3 cut(s) 479, 512, 533
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 4 cut(s) 54, 219, 456, 515
Tru9I TTAA 4 cut(s) 54, 219, 456, 515
TseI GCWGC 2 cut(s) 112, 137
TspDTI ATGAA 2 cut(s) 59, 472
XapI RAATTY 2 cut(s) 479, 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 2 cut(s) 279, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.