Rh6CG303800

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012657
Physical Location & Seq
Forward (+)
48400979 .. 48403207
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG303800.1

Sequence Viewer

Length: 465 bp
ATGGCGGGATCTGTTTTCACTTCTGCTTTGGAAGGAATGAAGCATGTTAAATCTGAAAATGGAGAGATGCTCACCAAGCATTTCTTGGATGTATGCAAACAGTTACTACCCGTTTTAGATAAGTTTGGAGCAGCACTTTCACCCGTCAAATCTGATGTTGCTAACAATATATCGAGGCTGGAAACCAAGTACTCTTCCAACCCATCAGAATTCAATCTATTGTACAGTCTAGTTCGGCCTGAGATTGAAGCCAAAACCGCTAAATCCTCATCCAGTTGCACAAATGCGCTACTCTGGCTAACTAGGGGTATGGACTACTTGGTGGAGCTGTTTCGAAATCTACATGATAATCCAGACTGGCCACTGTCAAAAGCTTGCACAGAAGCCTACAACAAGACATTGAAAAAATGGCATAATTGGATAGCTAGCTCTGGTTTTAGTGTAAGGAATCACAATCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

154

Amino Acids

17.34

Weight (kDa)

8.76

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 24 - 148 3.9e-41 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 258
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 2 cut(s) 191, 224
AgsI TTSAA 3 cut(s) 214, 248, 403
AluBI AGCT 4 cut(s) 328, 374, 425, 429
AluI AGCT 4 cut(s) 328, 374, 425, 429
AlwI GGATC 1 cut(s) 16
AoxI GGCC 2 cut(s) 236, 359
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 64, 132
AsuII TTCGAA 1 cut(s) 334
AsuNHI GCTAGC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 361
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 211
BfaI CTAG 3 cut(s) 230, 303, 426
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 191
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu14I TTCGAA 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 273, 362
BseGI GGATG 2 cut(s) 94, 269
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 273, 362
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 2 cut(s) 238, 361
BsnI GGCC 2 cut(s) 238, 361
Bsp119I TTCGAA 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 2 cut(s) 5, 258
BspANI GGCC 2 cut(s) 238, 361
BspCNI CTCAG 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 2 cut(s) 273, 362
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 3 cut(s) 102, 227, 366
Bst6I CTCTTC 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 376, 427
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 94, 269
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 3 cut(s) 76, 257, 295
BstNSI RCATGY 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 2 cut(s) 238, 361
BtsCI GGATG 2 cut(s) 94, 269
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 2 cut(s) 376, 427
CfoI GCGC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 190, 223
CviAII CATG 2 cut(s) 44, 344
CviQI GTAC 2 cut(s) 190, 223
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 2 cut(s) 47, 347
FaiI YATR 6 cut(s) 45, 94, 170, 311, 345, 414
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 2 cut(s) 43, 343
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 101, 256
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 3 cut(s) 230, 303, 426
GlaI GCGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 238, 361
HhaI GCGC 1 cut(s) 289
Hin1II CATG 2 cut(s) 47, 347
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 1 cut(s) 448
HphI GGTGA 2 cut(s) 64, 132
Hpy188I TCNGA 3 cut(s) 55, 154, 208
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 102, 227, 366
HpyCH4V TGCA 3 cut(s) 96, 279, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 257, 295
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 2 cut(s) 47, 347
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 128, 325
LpnPI CCDG 7 cut(s) 164, 252, 280, 286, 343, 366, 417
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 230, 303, 426
MaeIII GTNAC 1 cut(s) 102
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 186
MflI RGATCY 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 2 cut(s) 209, 415
MluNI TGGCCA 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 2 cut(s) 168, 277
Mox20I TGGCCA 1 cut(s) 361
MscI TGGCCA 1 cut(s) 361
MseI TTAA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 361
MwoI GCNNNNNNNGC 3 cut(s) 76, 257, 295
NdeII GATC 1 cut(s) 8
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 2 cut(s) 47, 347
NspI RCATGY 1 cut(s) 47
NspV TTCGAA 1 cut(s) 334
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 2 cut(s) 191, 224
RsaNI GTAC 2 cut(s) 190, 223
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 191
SetI ASST 4 cut(s) 330, 376, 427, 431
SfaNI GCATC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 334
Sse9I AATT 2 cut(s) 209, 415
SsiI CCGC 2 cut(s) 5, 258
SspMI CTAG 3 cut(s) 230, 303, 426
TaaI ACNGT 3 cut(s) 102, 227, 366
TaqI TCGA 2 cut(s) 173, 334
TasI AATT 2 cut(s) 209, 415
TatI WGTACW 2 cut(s) 189, 222
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 369
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 369
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 3 cut(s) 230, 303, 426
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.