Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012657

Physical Location & Seq

Genomic Coordinates Forward (+)

30306491 .. 30307439

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0189100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAATGCTGTGGAGATTATGGATGAGTCTCCAGCCCATTTGCTTGGTTCTGCAAACAGTAAGTCAGACAATGGGCTTAAGAAACCAGATTGTCAAGGAATCCTAGATATCATGACATCCGAAAGTATTTCAATGGAGCCACCTATCAGCCTTAAGAATCTCTCTGCCTGCTCTAGTCTGGCTTCTAAGAGAAAGCACCAACAAATGGGGCCAGAGACTGCAGCTCAAAGCACGGAAAAAGGTGTAGCTAAAGCTGGCCAAGCAAATGAAAACTGTAGTCAAAGTACTTTCCGTAGTGTTACTGAGATTTCTTCGGTAATGATAGTTTTATACTCATCTTACCATGGTAAAGCAATGAAAGGAATGGGCGCCCTTGAATCCTCAATCGCTACTGGTTTACCTGCTAATTCTTCTGAAAGATGTGCAGATCCTTCATCAACTGGTTTTGGGAACTTTTGCTTGCCTGGTGGCAAGGTTCCTCTGGATTTTACTTTGAAAATGAGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

169

Amino Acids

17.71

Weight (kDa)

6.29

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012657)

Species	Orthologous Gene IDs
malus_domestica	MD05G1193600.v1.1 MD10G1180300.v1.1
prunus_persica	Prupe.8G220300_v2.0.a1 Prupe.8G220300_v2.0.a1
pyrus_communis	pycom05g18100 pycom10g15630
rosa_chinensis	RchiOBHm_Chr6g0287551
rosa_laevigata	RLG00000012485
rosa_multiflora	Rmu_sc0004974.1_g000007 Rmu_sc0007029.1_g000009
rosa_roxburghii	Rroxscaffold_7G00180950 Rroxscaffold_7G00181380
rosa_rugosa	Rorug06G0189000 Rorug06G0189100
rosa_samantha	Rh6AG300300 Rh6BG305700 Rh6CG303800 Rh6CG314100
rosa_wichuraiana	Rw6G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	205
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	2 cut(s)	77, 152
AgsI	TTSAA	3 cut(s)	132, 377, 496
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	3 cut(s)	224, 248, 254
AluI	AGCT	3 cut(s)	224, 248, 254
Alw26I	GTCTC	2 cut(s)	33, 209
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	209, 256
ApeKI	GCWGC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	33, 209
BfaI	CTAG	2 cut(s)	104, 174
BfmI	CTRYAG	2 cut(s)	219, 274
BfoI	RGCGCY	1 cut(s)	372
BfrI	CTTAAG	2 cut(s)	77, 152
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	4 cut(s)	138, 210, 370, 477
BmrFI	CCNGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	397, 445
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	28, 116
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	397, 445
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	211, 258
BshNI	GGYRCC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	33, 209
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	211, 258
Bsp143I	GATC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	343
BspANI	GGCC	2 cut(s)	211, 258
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	138, 210, 370, 477
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	2 cut(s)	77, 152
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	397, 445
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	1 cut(s)	427
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	59, 275
BstACI	GRCGYC	1 cut(s)	369
BstAFI	CTTAAG	2 cut(s)	77, 152
BstC8I	GCNNGC	3 cut(s)	169, 256, 461
BstDEI	CTNAG	2 cut(s)	186, 303
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	28, 116
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	33, 209
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	2 cut(s)	219, 274
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	211, 258
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	28, 116
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	169, 256, 461
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	2 cut(s)	112, 344
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	186, 303
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	115, 347
FaiI	YATR	5 cut(s)	20, 113, 331, 345, 506
FatI	CATG	2 cut(s)	111, 343
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	35, 103
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	104, 174
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	211, 258
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	115, 347
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	4 cut(s)	26, 99, 157, 377
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	3 cut(s)	67, 121, 415
Hpy188III	TCNNGA	2 cut(s)	112, 482
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	2 cut(s)	59, 275
HpyCH4V	TGCA	3 cut(s)	53, 221, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	186, 303
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	115, 347
HspAI	GCGC	1 cut(s)	369
KasI	GGCGCC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	104, 174
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	2 cut(s)	303, 402
MflI	RGATCY	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	1 cut(s)	406
MluNI	TGGCCA	1 cut(s)	258
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	391, 489
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	2 cut(s)	78, 153
Msp20I	TGGCCA	1 cut(s)	258
MspCI	CTTAAG	2 cut(s)	77, 152
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	260
NarI	GGCGCC	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	115, 347
NlaIV	GGNNCC	4 cut(s)	138, 210, 370, 477
PagI	TCATGA	1 cut(s)	111
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	99, 157, 377
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	34
PluTI	GGCGCC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	4 cut(s)	138, 210, 370, 477
PspPI	GGNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	78, 153
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	7 cut(s)	145, 226, 244, 250, 256, 403, 477
SfcI	CTRYAG	2 cut(s)	219, 274
SfoI	GGCGCC	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	77, 152
SmoI	CTYRAG	2 cut(s)	77, 152
Sse9I	AATT	1 cut(s)	406
SspDI	GGCGCC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	104, 174
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	59, 275
TasI	AATT	1 cut(s)	406
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	3 cut(s)	99, 157, 377
Tru1I	TTAA	2 cut(s)	78, 153
Tru9I	TTAA	2 cut(s)	78, 153
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	17, 282, 371, 423
TspGWI	ACGGA	2 cut(s)	248, 281
Van91I	CCANNNNNTGG	1 cut(s)	205
Vha464I	CTTAAG	2 cut(s)	77, 152
XspI	CTAG	2 cut(s)	104, 174
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.