Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012657

Physical Location & Seq

Genomic Coordinates Reverse (-)

20018339 .. 20020401

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAGGATCAGGAACTGTTTTCACTTCTGCTTTGGAAGGGACGAACCATGTTAAATCCGAAACGGGAGAGATGCTCACCAAGCCTTTCTTGGATGTATGCAAACACTTGCTGCCCGTTTTAGATAAGTTTGGAGCTGCCTTTGCGCCTGTGAAATCTGATATTGGTAACAACATATCGAGATTGGATTCTAAGTATTCGTCGAACCCGTCAGAATTCAACCTCTTGTACAGTCTAGTCCAGGTTGAGATTGAAGCCAAAAATGCAAAATCCTCATCCAGTTGCACAAATGCTCTACTCTGGCTAACAAGGGCCATGGACTACTTGGTGGAGCTGTTCCGGAATCTGCATGATAATCCAGACTGGCCAATGTCCAAGGCTTGTTCCGAGGCCTACGGCAAGACCTTGAAAAAATGGCATAACTGGCTAGCTAGCTCAAGTTTTAGTGTTGGAATTAAGCTTGCACCAGATAGGAAGAAATTTATGGACATATTAGGTGGTGAAACACCTGATTTGAATTCTGACATTGGTAAATTCTGCACAAACTTCTCTCCACTGCTCCAAGAGAATCATAAGTTCTTGGACTCTGTTGGAATGGACAATGTGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

205

Amino Acids

22.55

Weight (kDa)

6.51

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012657)

Species	Orthologous Gene IDs
malus_domestica	MD05G1193600.v1.1 MD10G1180300.v1.1
prunus_persica	Prupe.8G220300_v2.0.a1 Prupe.8G220300_v2.0.a1
pyrus_communis	pycom05g18100 pycom10g15630
rosa_chinensis	RchiOBHm_Chr6g0287551
rosa_laevigata	RLG00000012485
rosa_multiflora	Rmu_sc0004974.1_g000007 Rmu_sc0007029.1_g000009
rosa_roxburghii	Rroxscaffold_7G00180950 Rroxscaffold_7G00181380
rosa_rugosa	Rorug06G0189000 Rorug06G0189100
rosa_samantha	Rh6AG300300 Rh6BG305700 Rh6CG303800 Rh6CG314100
rosa_wichuraiana	Rw6G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	339
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	4 cut(s)	215, 479, 517, 533
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	220, 254, 409, 517
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	6 cut(s)	137, 334, 431, 435, 460, 611
AluI	AGCT	6 cut(s)	137, 334, 431, 435, 460, 611
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	3 cut(s)	312, 365, 390
ApeKI	GCWGC	2 cut(s)	112, 137
ApoI	RAATTY	4 cut(s)	215, 479, 517, 533
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	70, 512
AsuNHI	GCTAGC	2 cut(s)	427, 431
BalI	TGGCCA	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	99, 124
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	236, 428, 432
BisI	GCNGC	2 cut(s)	113, 138
BlsI	GCNGC	2 cut(s)	114, 139
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	63
BmtI	GCTAGC	2 cut(s)	431, 435
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpuEI	CTTGAG	1 cut(s)	421
BsaJI	CCNNGG	3 cut(s)	315, 375, 387
BsaWI	WCCGGW	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	279, 368, 428
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	315, 375, 387
BseGI	GGATG	2 cut(s)	100, 275
BseNI	ACTGG	3 cut(s)	279, 368, 428
BseXI	GCAGC	2 cut(s)	99, 124
BsgI	GTGCAG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	314, 367, 392
BsiSI	CCGG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	314, 367, 392
Bsp13I	TCCGGA	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	315
BspANI	GGCC	3 cut(s)	314, 367, 392
BspEI	TCCGGA	1 cut(s)	339
BspOI	GCTAGC	2 cut(s)	431, 435
BspPI	GGATC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	279, 368, 428
BssECI	CCNNGG	3 cut(s)	315, 375, 387
BssMI	GATC	1 cut(s)	8
BssT1I	CCWWGG	2 cut(s)	315, 375
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	19, 233
BstAUI	TGTACA	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	429, 433, 462
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	100, 275
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 143, 263, 424
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	99, 124
BsuRI	GGCC	3 cut(s)	314, 367, 392
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	100, 275
BtsI	GCAGTG	1 cut(s)	554
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	3 cut(s)	429, 433, 462
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	50, 316, 350
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
EaeI	YGGCCR	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	315, 375
Eco147I	AGGCCT	1 cut(s)	392
EcoRI	GAATTC	2 cut(s)	215, 517
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	315, 375
ErhI	CCWWGG	2 cut(s)	315, 375
FaeI	CATG	3 cut(s)	53, 319, 353
FaiI	YATR	9 cut(s)	51, 100, 176, 317, 351, 420, 485, 491, 573
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	49, 315, 349
Fnu4HI	GCNGC	2 cut(s)	113, 138
FokI	GGATG	2 cut(s)	107, 262
Fsp4HI	GCNGC	2 cut(s)	113, 138
FspBI	CTAG	3 cut(s)	236, 428, 432
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	113, 138
HaeIII	GGCC	3 cut(s)	314, 367, 392
HapII	CCGG	1 cut(s)	340
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	53, 319, 353
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	2 cut(s)	458, 609
HinfI	GANTC	4 cut(s)	188, 343, 568, 584
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	2 cut(s)	70, 512
Hpy188I	TCNGA	5 cut(s)	61, 160, 214, 388, 523
Hpy188III	TCNNGA	4 cut(s)	12, 180, 340, 359
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	19, 233
HpyCH4V	TGCA	6 cut(s)	102, 266, 285, 349, 464, 540
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 143, 263, 424
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	53, 319, 353
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	339
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	134, 331, 564
Lsp1109I	GCAGC	2 cut(s)	99, 124
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	3 cut(s)	236, 428, 432
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	1 cut(s)	487
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	5 cut(s)	215, 453, 479, 517, 533
MluNI	TGGCCA	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	430, 571
MnlI	CCTC	3 cut(s)	233, 283, 382
Mox20I	TGGCCA	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	2 cut(s)	54, 456
Msp20I	TGGCCA	1 cut(s)	367
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	82, 143, 263, 424
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	8
NheI	GCTAGC	2 cut(s)	427, 431
NlaIII	CATG	3 cut(s)	53, 319, 353
PceI	AGGCCT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	188, 343, 568
PkrI	GCNGC	2 cut(s)	114, 139
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	54, 456
SatI	GCNGC	2 cut(s)	113, 138
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	5 cut(s)	215, 453, 479, 517, 533
SseBI	AGGCCT	1 cut(s)	392
SspMI	CTAG	3 cut(s)	236, 428, 432
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	315, 375
TaaI	ACNGT	2 cut(s)	19, 233
TaqI	TCGA	2 cut(s)	179, 203
TasI	AATT	5 cut(s)	215, 453, 479, 517, 533
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	188, 343, 568
Tru1I	TTAA	2 cut(s)	54, 456
Tru9I	TTAA	2 cut(s)	54, 456
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	2 cut(s)	112, 137
TspRI	CASTG	1 cut(s)	561
XapI	RAATTY	4 cut(s)	215, 479, 517, 533
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 322
XspI	CTAG	3 cut(s)	236, 428, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.