MD05G1197800.v1.1

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006357
Physical Location & Seq
Reverse (-)
32471810 .. 32474882
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1197800.v1.1.491

Sequence Viewer

Length: 495 bp
ATGAAAATGGATTCAGAAGCTGCGCAAAAAGCGCCGAGCAATAATCCGTCGGTAATGCTCGCTTCTCTTCTGAGCAGGAGAGCCAAGCTTCAAGATGAACTCCGAGGGATTGAAAAACAGGTTAGCCTGTGGCAGGTCTATGATTTGGAGACTAGTTATCTGCAGGATCCAACTCAATGTGGAAATGTATTAAAAGGTTTTGAAGGGTTTCTATCATCATCCAAGAACACTAACCTCTTGAAGCGGTCTAGGAAATTTCAGCCTGAAGATAGGATGTTTTCATTATCTTCTGTCACATCACCAGCAGCTGAGGAACTTGCGGCTGCACGGGATGATGGGAGATCAGACTTTGGTCCAGGTCGGTCCAAAGGCGGTATATATGGGAATGGGCAAGGAAAGCCAAAGAAGGGAAGACCTGCACCGAGGGACGCGAAGAGAATCAGACCTTCAAGCGAACAAGATTACGACTATGAAGATGATGCTGAGATGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

165

Amino Acids

18.17

Weight (kDa)

8.62

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NuA4 PF09340 20 - 101 1.3e-23 Histone acetyltransferase subunit NuA4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 24
Acc36I ACCTGC 2 cut(s) 124, 424
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 244, 320, 372
AclWI GGATC 2 cut(s) 161, 174
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 133, 407
AgsI TTSAA 5 cut(s) 92, 113, 203, 241, 450
AhlI ACTAGT 1 cut(s) 152
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 3 cut(s) 20, 88, 308
AluI AGCT 3 cut(s) 20, 88, 308
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 161, 174
AlwNI CAGNNNCTG 2 cut(s) 20, 308
ApeKI GCWGC 3 cut(s) 20, 305, 323
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 25, 34
AspS9I GGNCC 2 cut(s) 353, 363
AsuHPI GGTGA 1 cut(s) 291
AvaII GGWCC 2 cut(s) 353, 363
BamHI GGATCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 7, 310, 317
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 143
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 2 cut(s) 153, 249
BfmI CTRYAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 2 cut(s) 124, 424
BisI GCNGC 4 cut(s) 21, 306, 321, 324
BlsI GCNGC 4 cut(s) 22, 307, 322, 325
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 353, 363
BmgT120I GGNCC 2 cut(s) 353, 363
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 469
BoxI GACNNNNGTC 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 418
Bpu10I CCTNAGC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 103, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 407
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 103, 422
BseGI GGATG 3 cut(s) 218, 279, 337
BseLI CCNNNNNNNGG 2 cut(s) 133, 407
BseMII CTCAG 3 cut(s) 62, 300, 474
BseXI GCAGC 3 cut(s) 7, 310, 317
BsgI GTGCAG 2 cut(s) 309, 402
Bsh1236I CGCG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 133, 407
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 166, 341
BspACI CCGC 3 cut(s) 244, 320, 372
BspCNI CTCAG 3 cut(s) 63, 301, 475
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 165
BspMI ACCTGC 2 cut(s) 124, 424
BspPI GGATC 2 cut(s) 161, 174
BssECI CCNNGG 2 cut(s) 103, 422
BssMI GATC 2 cut(s) 166, 341
Bst2UI CCWGG 1 cut(s) 357
Bst6I CTCTTC 2 cut(s) 72, 428
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 71, 309, 483
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 218, 279, 337
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 25, 34
BstKTI GATC 2 cut(s) 169, 344
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 166, 341
BstMWI GCNNNNNNNGC 3 cut(s) 29, 31, 397
BstNI CCWGG 1 cut(s) 357
BstPAI GACNNNNGTC 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 161
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 7, 310, 317
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtsCI GGATG 3 cut(s) 218, 279, 337
BveI ACCTGC 2 cut(s) 124, 424
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 2 cut(s) 20, 308
CfoI GCGC 2 cut(s) 25, 34
Cfr13I GGNCC 2 cut(s) 353, 363
CseI GACGC 1 cut(s) 437
CviJI RGCY 8 cut(s) 20, 83, 88, 126, 262, 308, 323, 400
CviKI_1 RGCY 8 cut(s) 20, 83, 88, 126, 262, 308, 323, 400
DdeI CTNAG 3 cut(s) 71, 309, 483
DpnI GATC 2 cut(s) 168, 343
DpnII GATC 2 cut(s) 166, 341
Eam1104I CTCTTC 2 cut(s) 72, 428
EarI CTCTTC 2 cut(s) 72, 428
Eco47I GGWCC 2 cut(s) 353, 363
Eco57I CTGAAG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 355
FaiI YATR 6 cut(s) 141, 377, 379, 381, 471, 493
FaqI GGGAC 1 cut(s) 440
Fnu4HI GCNGC 4 cut(s) 21, 306, 321, 324
FokI GGATG 3 cut(s) 205, 286, 344
Fsp4HI GCNGC 4 cut(s) 21, 306, 321, 324
FspBI CTAG 2 cut(s) 153, 249
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 2 cut(s) 24, 33
GluI GCNGC 4 cut(s) 21, 306, 321, 324
HaeII RGCGCY 1 cut(s) 35
HgaI GACGC 1 cut(s) 437
HhaI GCGC 2 cut(s) 25, 34
Hin6I GCGC 2 cut(s) 23, 32
HinP1I GCGC 2 cut(s) 23, 32
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 2 cut(s) 11, 438
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 5 cut(s) 16, 72, 104, 346, 443
Hpy188III TCNNGA 2 cut(s) 92, 238
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 197, 400, 456
HpyCH4V TGCA 3 cut(s) 163, 326, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 31, 397
HpyF3I CTNAG 3 cut(s) 71, 309, 483
HspAI GCGC 2 cut(s) 23, 32
Kzo9I GATC 2 cut(s) 166, 341
Lsp1109I GCAGC 3 cut(s) 7, 310, 317
LweI GCATC 1 cut(s) 469
MaeI CTAG 2 cut(s) 153, 249
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 168, 343
MboI GATC 2 cut(s) 166, 341
MboII GAAGA 6 cut(s) 59, 278, 279, 423, 445, 485
MflI RGATCY 1 cut(s) 166
MluCI AATT 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 4 cut(s) 98, 245, 304, 417
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 29, 31, 397
NdeII GATC 2 cut(s) 166, 341
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 11, 438
PkrI GCNGC 4 cut(s) 22, 307, 322, 325
PshAI GACNNNNGTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 353, 363
PstI CTGCAG 1 cut(s) 165
PstNI CAGNNNCTG 2 cut(s) 20, 308
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 4 cut(s) 21, 306, 321, 324
Sau3AI GATC 2 cut(s) 166, 341
Sau96I GGNCC 2 cut(s) 353, 363
ScrFI CCNGG 1 cut(s) 357
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 161
SinI GGWCC 2 cut(s) 353, 363
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 1 cut(s) 254
SsiI CCGC 3 cut(s) 244, 320, 372
SspMI CTAG 2 cut(s) 153, 249
StyD4I CCNGG 1 cut(s) 355
TaqII GACCGA 1 cut(s) 351
TasI AATT 1 cut(s) 254
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 2 cut(s) 11, 438
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 3 cut(s) 20, 305, 323
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 17, 111, 270, 486
TspGWI ACGGA 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 353, 363
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 2 cut(s) 153, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.