Rmu_co8436877.1_g000001

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436877.1
OG0006357
Physical Location & Seq
Forward (+)
1 .. 1415
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436877.1_g000001.1.cds

Sequence Viewer

Length: 259 bp
cctgaagcgatctaggaaatttcaacctgaagacaggctcttctcattatcttctgtgacatcaccagcagctgaagaacttacagctggacgagatgatgggagatcagactttggtcccggccgttcaaaagggggtatatacgcgaatgggcaaggaaaaccgaagaaaggaagacctactccaagagatgcaaagagaatcaggccgtcgagtgaacaagattatgactatgaagatgatcctgatatgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

9.05

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 3 cut(s) 24, 49, 94
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 24, 130
AluBI AGCT 2 cut(s) 72, 87
AluI AGCT 2 cut(s) 72, 87
AlwI GGATC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 72
AoxI GGCC 2 cut(s) 122, 207
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 37, 182
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 93
BceAI ACGGC 2 cut(s) 109, 194
BcnI CCSGG 1 cut(s) 121
BfaI CTAG 1 cut(s) 13
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 182
BoxI GACNNNNGTC 1 cut(s) 115
BpiI GAAGAC 2 cut(s) 37, 182
BpuMI CCSGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 171
BseX3I CGGCCG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 124, 209
BsiEI CGRYCG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 121
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 2 cut(s) 124, 209
Bsp143I GATC 3 cut(s) 9, 105, 242
BspANI GGCC 2 cut(s) 124, 209
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 45
BssMI GATC 3 cut(s) 9, 105, 242
Bst6I CTCTTC 1 cut(s) 45
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 3 cut(s) 12, 108, 245
BstMBI GATC 3 cut(s) 9, 105, 242
BstMCI CGRYCG 1 cut(s) 125
BstPAI GACNNNNGTC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 2 cut(s) 37, 182
BstZI CGGCCG 1 cut(s) 122
BsuRI GGCC 2 cut(s) 124, 209
CaiI CAGNNNCTG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 117
CviJI RGCY 5 cut(s) 38, 72, 87, 124, 209
CviKI_1 RGCY 5 cut(s) 38, 72, 87, 124, 209
DpnI GATC 3 cut(s) 11, 107, 244
DpnII GATC 3 cut(s) 9, 105, 242
EaeI YGGCCR 1 cut(s) 122
EagI CGGCCG 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 117
Eco52I CGGCCG 1 cut(s) 122
Eco57I CTGAAG 3 cut(s) 24, 49, 94
FaiI YATR 5 cut(s) 141, 143, 229, 235, 252
FaqI GGGAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 13
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 124, 209
HapII CCGG 1 cut(s) 121
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 215
HpyCH4V TGCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 9, 105, 242
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 15, 20, 40, 73, 79, 134, 191
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 56
MalI GATC 3 cut(s) 11, 107, 244
MboI GATC 3 cut(s) 9, 105, 242
MboII GAAGA 7 cut(s) 32, 42, 43, 87, 179, 187, 249
MluCI AATT 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 72, 87
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 147
NciI CCSGG 1 cut(s) 121
NdeII GATC 3 cut(s) 9, 105, 242
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 71
PshAI GACNNNNGTC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 72
PvuII CAGCTG 2 cut(s) 72, 87
SapI GCTCTTC 1 cut(s) 45
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 3 cut(s) 9, 105, 242
Sau96I GGNCC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 121
SetI ASST 4 cut(s) 29, 74, 89, 182
SfaNI GCATC 1 cut(s) 182
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 119
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 18
TfiI GAWTC 1 cut(s) 202
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 18
XspI CTAG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.