Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006357

Physical Location & Seq

Genomic Coordinates Reverse (-)

20213330 .. 20216347

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G224100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATTCAGAAGGGCAGAAAACGGCTAACAACCCATCAGTAATGCTTGCTTCTCTTCTGAGTAGGAGAGCCAAGCTTCAAGACGAACTCCGGGGCATTGAAAAACAGGTTTATGATTTGGAGACGAGTTATCTGCAGGATCCAACTCAATGTGGCAATGTATTAAAAGGTTTTGAAGGGTTTCTATCCTCATCCAAGAACACTAACTTCTTGAAGCGATCAAGGAAATTTCAGCCTGAAGATAGGATGTTCTCATTATCTTCTGTCACATCACCAGCAGCTGAAGAACTTGCAGCCGCACGAGATGATGGGAGATCAGACTTTGGTCCAGGTCGTTCTAAAGGTGGTATATATGCGAACGGGCAAGGAAAACCAAAGAAGGGAAGACCAGCGCCGAGGGATGTGAAGAGAATCAGGCCTTCAAGTGAACAAGATTATGACTATGAAGATGATGCGGACATGACACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NuA4

Protein Analysis

157

Amino Acids

17.32

Weight (kDa)

7.77

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385
malus_domestica	MD05G1197800.v1.1 MD10G1184400.v1.1
prunus_persica	Prupe.8G224100_v2.0.a1 Prupe.8G224100_v2.0.a1 Prupe.8G224100_v2.0.a1
pyrus_communis	pycom10g15970
rosa_chinensis	RchiOBHm_Chr6g0288171
rosa_laevigata	RLG00000012432
rosa_multiflora	Rmu_co8436877.1_g000001 Rmu_sc0002207.1_g000008 Rmu_sc0031243.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180420
rosa_rugosa	Rorug06G0194700
rosa_samantha	Rh6AG305100 Rh6CG319100 Rh6DG304200
rosa_wichuraiana	Rw0G014440 Rw6G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	297, 455
AclWI	GGATC	2 cut(s)	134, 147
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	2 cut(s)	258, 303
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	5 cut(s)	80, 101, 176, 214, 423
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	76, 281
AluI	AGCT	2 cut(s)	76, 281
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	134, 147
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	278, 293
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	290, 305
BccI	CCATC	2 cut(s)	43, 302
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	395
BisI	GCNGC	3 cut(s)	279, 294, 297
BlsI	GCNGC	3 cut(s)	280, 295, 298
Bme1390I	CCNGG	2 cut(s)	92, 330
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	92, 330
BmsI	GCATC	1 cut(s)	442
BoxI	GACNNNNGTC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	91, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	91, 395
BseGI	GGATG	3 cut(s)	191, 252, 406
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	290, 305
BshFI	GGCC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	139, 218, 314
BspACI	CCGC	2 cut(s)	297, 455
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	134, 147
BsrDI	GCAATG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	91, 395
BssMI	GATC	3 cut(s)	139, 218, 314
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	60, 401
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	191, 252, 406
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	3 cut(s)	142, 221, 317
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	139, 218, 314
BstNI	CCWGG	1 cut(s)	330
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	90, 328
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	290, 305
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	191, 252, 406
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	7 cut(s)	26, 71, 76, 235, 281, 296, 418
CviKI_1	RGCY	7 cut(s)	26, 71, 76, 235, 281, 296, 418
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	3 cut(s)	141, 220, 316
DpnII	GATC	3 cut(s)	139, 218, 314
Eam1104I	CTCTTC	2 cut(s)	60, 401
EarI	CTCTTC	2 cut(s)	60, 401
Eco147I	AGGCCT	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	258, 303
EcoRII	CCWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	1 cut(s)	463
FaiI	YATR	7 cut(s)	114, 350, 352, 354, 438, 444, 461
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	279, 294, 297
FokI	GGATG	3 cut(s)	178, 259, 413
Fsp4HI	GCNGC	3 cut(s)	279, 294, 297
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	3 cut(s)	279, 294, 297
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	1 cut(s)	91
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	5, 411
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	264
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	10, 60, 319
Hpy188III	TCNNGA	2 cut(s)	80, 211
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	5, 170, 373, 429
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	136, 293
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	139, 218, 314
LpnPI	CCDG	9 cut(s)	92, 104, 122, 249, 288, 315, 342, 400, 402
Lsp1109I	GCAGC	2 cut(s)	290, 305
LweI	GCATC	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	141, 220, 316
MboI	GATC	3 cut(s)	139, 218, 314
MboII	GAAGA	7 cut(s)	47, 251, 252, 296, 396, 418, 458
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	199, 390
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	92, 330
MvaI	CCWGG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	3 cut(s)	139, 218, 314
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	5, 411
PkrI	GCNGC	3 cut(s)	280, 295, 298
PshAI	GACNNNNGTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	279, 294, 297
Sau3AI	GATC	3 cut(s)	139, 218, 314
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	92, 330
SetI	ASST	6 cut(s)	78, 111, 172, 283, 334, 346
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	1 cut(s)	227
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	297, 455
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	2 cut(s)	90, 328
TaaI	ACNGT	1 cut(s)	468
TasI	AATT	1 cut(s)	227
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	5, 411
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	278, 293
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.