Rroxscaffold_7G00180420

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006357
Physical Location & Seq
Forward (+)
19808171 .. 19810688
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180420.1

Sequence Viewer

Length: 456 bp
ATGGATTCGGAAGCGCAAAATCCATCACAAGTGCTTGCTACACTCCTCAGTAAGAGAACCAAGCTTCAAGACGAACTCAGAGGAATTGAGAAACAGGTCTATGATCTAGAGACTACGTATCTGCAGGACCCGAGTCAATGTGGCAATGTATTAAAAGGTTTTGAAGGGTTTCTATCTTCATCCAAGAGCACGGCCTTCCTGAAGCGATCTAGGAAATTTCAACCTGAAGACAGGCTCTTCTCATTGTCTTCTGTGACATCACCAGCAGCTGAAGAACTTACAGCTGGGCGAGATGATGGGAGATCAGACTTTGGTCCCGGCCGTTCTAAAGGGGGTATATACGCGAATGGGCAAGGAAAACCGAAGAAAGGAAGACCTACTCCAAGAGATGCAAAGAGAATCAGGCCGTCGAGTGAACAAGATTATGACTATGAAGATGATCCTGATATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

151

Amino Acids

16.8

Weight (kDa)

6.36

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NuA4 PF09340 12 - 88 9e-27 Histone acetyltransferase subunit NuA4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 344
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 3 cut(s) 221, 246, 291
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 3 cut(s) 68, 164, 221
AluBI AGCT 3 cut(s) 64, 269, 284
AluI AGCT 3 cut(s) 64, 269, 284
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 3 cut(s) 192, 319, 404
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 127, 314
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 2 cut(s) 127, 314
BbsI GAAGAC 3 cut(s) 234, 240, 379
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 31, 290
BceAI ACGGC 3 cut(s) 207, 306, 391
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 107, 210
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 127, 314
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 127, 314
BmiI GGNNCC 2 cut(s) 129, 316
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 379
BoxI GACNNNNGTC 2 cut(s) 132, 312
BpiI GAAGAC 3 cut(s) 234, 240, 379
BpuMI CCSGG 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 151
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 61, 91
BseRI GAGGAG 1 cut(s) 35
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 3 cut(s) 194, 321, 406
BsiEI CGRYCG 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 3 cut(s) 194, 321, 406
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 4 cut(s) 103, 206, 302, 439
BspANI GGCC 3 cut(s) 194, 321, 406
BspCNI CTCAG 2 cut(s) 60, 90
BspFNI CGCG 1 cut(s) 344
BspLI GGNNCC 2 cut(s) 129, 316
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 151
BssMI GATC 4 cut(s) 103, 206, 302, 439
Bst6I CTCTTC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 47, 77
BstF5I GGATG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 4 cut(s) 106, 209, 305, 442
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 103, 206, 302, 439
BstMCI CGRYCG 1 cut(s) 322
BstPAI GACNNNNGTC 2 cut(s) 132, 312
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 122
BstSNI TACGTA 1 cut(s) 117
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 3 cut(s) 234, 240, 379
BstZI CGGCCG 1 cut(s) 319
BsuRI GGCC 3 cut(s) 194, 321, 406
BtsCI GGATG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 127, 314
CviJI RGCY 7 cut(s) 64, 194, 235, 269, 284, 321, 406
CviKI_1 RGCY 7 cut(s) 64, 194, 235, 269, 284, 321, 406
DdeI CTNAG 2 cut(s) 47, 77
DpnI GATC 4 cut(s) 105, 208, 304, 441
DpnII GATC 4 cut(s) 103, 206, 302, 439
EaeI YGGCCR 1 cut(s) 319
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 319
Eco105I TACGTA 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 127, 314
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 221, 246, 291
Eco88I CYCGRG 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 127
FaiI YATR 6 cut(s) 102, 338, 340, 426, 432, 449
FaqI GGGAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 107, 210
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 3 cut(s) 194, 321, 406
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 3 cut(s) 5, 133, 399
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 3 cut(s) 10, 80, 307
Hpy188III TCNNGA 4 cut(s) 68, 107, 199, 443
Hpy8I GTNNAC 1 cut(s) 416
Hpy99I CGWCG 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 158, 205
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 124, 392
HpyF3I CTNAG 2 cut(s) 47, 77
HpySE526I ACGT 1 cut(s) 116
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 4 cut(s) 103, 206, 302, 439
LguI GCTCTTC 1 cut(s) 242
LpnPI CCDG 9 cut(s) 80, 110, 212, 217, 237, 270, 276, 331, 388
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 107, 210
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 253
MalI GATC 4 cut(s) 105, 208, 304, 441
MboI GATC 4 cut(s) 103, 206, 302, 439
MboII GAAGA 8 cut(s) 168, 229, 239, 240, 284, 376, 384, 446
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 84, 215
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 56, 74
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 269, 284
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 344
NciI CCSGG 1 cut(s) 318
NdeII GATC 4 cut(s) 103, 206, 302, 439
NlaIV GGNNCC 2 cut(s) 129, 316
NmuCI GTSAC 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 5, 399
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 127
PshAI GACNNNNGTC 2 cut(s) 132, 312
Psp5II RGGWCCY 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 129, 316
PspPI GGNCC 2 cut(s) 127, 314
PspPPI RGGWCCY 1 cut(s) 127
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 2 cut(s) 269, 284
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 4 cut(s) 103, 206, 302, 439
Sau96I GGNCC 2 cut(s) 127, 314
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 191
SetI ASST 8 cut(s) 66, 99, 119, 160, 226, 271, 286, 379
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 122
SinI GGWCC 2 cut(s) 127, 314
SnaBI TACGTA 1 cut(s) 117
Sse9I AATT 2 cut(s) 84, 215
SspMI CTAG 2 cut(s) 107, 210
StyD4I CCNGG 1 cut(s) 316
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 410
TasI AATT 2 cut(s) 84, 215
TfiI GAWTC 2 cut(s) 5, 399
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 168, 447
VpaK11BI GGWCC 2 cut(s) 127, 314
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 2 cut(s) 107, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.