Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006357

Physical Location & Seq

Genomic Coordinates Reverse (-)

19124380 .. 19127355

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTCTATTGCACTCAAATGTGAAAATCTCTCCACCAACAAAGAGCCGGAGCATCCGCAACCCAAACCCGAAACATCGACTGCTTTCCTGGATCGAAATTTTGTGCCCTAAATTTTGGGGTTTTTGGGTTTTTCCAAATTTGGTTCCTGGGCAGCTGCTAAACGATTCCCTGATGAAAATGGATTCAGAAGCAGCGCAAAAGGCGTCGAGCAATAATCCGTCGGTAATGCTCGCTTCTCTTCTGAGTAGGAGAGCCAAGCTTCAAGATGAACTCCGAGGCATTGAAAAACAGGTCTATGATTTGGAGACTAGTTATCTGCAGGATCCAACTCAATGTGGAAATGTACTAAAAGGTTTTGAAGGGTTTCTATCGTCATCCAAGAACACTAACCTCTTGAAGCGATCTAGGAAATTTCAGCCTGAAGATAGAATGTTTTCATTATCTTCTGTTACATCACCAGCAGCTGAGGAACTTGCGGCTGCACGAGATGATGGGAGATCAGACTTTGGTCCAGGTCGGTCCAAAGGCGGTATATATGCAAATGGGCAAGGAAAACCGAAGAAGGGAAGACCTGCACCGAGGGACGTGAAGAGAATCAGGCCAAGCGAACAAGATTACGACTATGAAGATGATGCCGAGATGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NuA4

Protein Analysis

217

Amino Acids

24.27

Weight (kDa)

9.41

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385
malus_domestica	MD05G1197800.v1.1 MD10G1184400.v1.1
prunus_persica	Prupe.8G224100_v2.0.a1 Prupe.8G224100_v2.0.a1 Prupe.8G224100_v2.0.a1
pyrus_communis	pycom10g15970
rosa_chinensis	RchiOBHm_Chr6g0288171
rosa_laevigata	RLG00000012432
rosa_multiflora	Rmu_co8436877.1_g000001 Rmu_sc0002207.1_g000008 Rmu_sc0031243.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180420
rosa_rugosa	Rorug06G0194700
rosa_samantha	Rh6AG305100 Rh6CG319100 Rh6DG304200
rosa_wichuraiana	Rw0G014440 Rw6G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	3 cut(s)	58, 479, 531
AclWI	GGATC	3 cut(s)	101, 320, 333
AcsI	RAATTY	4 cut(s)	99, 113, 139, 413
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	4 cut(s)	266, 287, 362, 400
AhlI	ACTAGT	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	589
AjnI	CCWGG	3 cut(s)	89, 148, 514
AluBI	AGCT	3 cut(s)	157, 262, 467
AluI	AGCT	3 cut(s)	157, 262, 467
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	101, 320, 333
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	5 cut(s)	154, 157, 194, 464, 482
ApoI	RAATTY	4 cut(s)	99, 113, 139, 413
Asp700I	GAANNNNTTC	2 cut(s)	366, 436
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	512, 522
AsuHPI	GGTGA	1 cut(s)	450
AvaII	GGWCC	2 cut(s)	512, 522
BaeGI	GKGCMC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	325
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	577
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	144, 166, 206, 469, 476
BccI	CCATC	1 cut(s)	488
BciT130I	CCWGG	3 cut(s)	91, 150, 516
BcoDI	GTCTC	1 cut(s)	302
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	2 cut(s)	312, 408
BfmI	CTRYAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	583
BisI	GCNGC	6 cut(s)	155, 158, 195, 465, 480, 483
BlsI	GCNGC	6 cut(s)	156, 159, 196, 466, 481, 484
Bme1390I	CCNGG	3 cut(s)	91, 150, 516
Bme18I	GGWCC	2 cut(s)	512, 522
BmgBI	CACGTC	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	512, 522
BmiI	GGNNCC	2 cut(s)	147, 327
BmrFI	CCNGG	3 cut(s)	91, 150, 516
BmsI	GCATC	2 cut(s)	63, 625
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	577
Bpu10I	CCTNAGC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	149, 277, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
BseBI	CCWGG	3 cut(s)	91, 150, 516
BseDI	CCNNGG	3 cut(s)	149, 277, 581
BseGI	GGATG	2 cut(s)	54, 377
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	2 cut(s)	236, 459
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	5 cut(s)	144, 166, 206, 469, 476
BsgI	GTGCAG	2 cut(s)	468, 561
BshFI	GGCC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	93, 325, 404, 500
BspACI	CCGC	3 cut(s)	58, 479, 531
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	237, 460
BspLI	GGNNCC	2 cut(s)	147, 327
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	3 cut(s)	101, 320, 333
BssECI	CCNNGG	3 cut(s)	149, 277, 581
BssMI	GATC	4 cut(s)	93, 325, 404, 500
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	3 cut(s)	91, 150, 516
Bst6I	CTCTTC	2 cut(s)	246, 587
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	245, 468
BstF5I	GGATG	2 cut(s)	54, 377
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	96, 328, 407, 503
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	4 cut(s)	93, 325, 404, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	3 cut(s)	91, 150, 516
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	89, 148, 514
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	5 cut(s)	144, 166, 206, 469, 476
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	604
BtrI	CACGTC	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	54, 377
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	512, 522
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	347
CviJI	RGCY	8 cut(s)	48, 157, 257, 262, 421, 467, 482, 604
CviKI_1	RGCY	8 cut(s)	48, 157, 257, 262, 421, 467, 482, 604
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	245, 468
DpnI	GATC	4 cut(s)	95, 327, 406, 502
DpnII	GATC	4 cut(s)	93, 325, 404, 500
Eam1104I	CTCTTC	2 cut(s)	246, 587
EarI	CTCTTC	2 cut(s)	246, 587
Eco47I	GGWCC	2 cut(s)	512, 522
Eco57I	CTGAAG	1 cut(s)	444
EcoRII	CCWGG	3 cut(s)	89, 148, 514
FaiI	YATR	6 cut(s)	300, 536, 538, 540, 627, 649
FaqI	GGGAC	1 cut(s)	599
Fnu4HI	GCNGC	6 cut(s)	155, 158, 195, 465, 480, 483
FokI	GGATG	2 cut(s)	41, 364
Fsp4HI	GCNGC	6 cut(s)	155, 158, 195, 465, 480, 483
FspBI	CTAG	2 cut(s)	312, 408
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	6 cut(s)	155, 158, 195, 465, 480, 483
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	167, 185, 597
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	450
Hpy188I	TCNGA	4 cut(s)	190, 246, 278, 505
Hpy188III	TCNNGA	2 cut(s)	266, 397
Hpy99I	CGWCG	2 cut(s)	211, 226
HpyAV	CCTTC	2 cut(s)	356, 559
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	5 cut(s)	13, 322, 485, 542, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	245, 468
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	206
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	93, 325, 404, 500
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	5 cut(s)	144, 166, 206, 469, 476
LweI	GCATC	2 cut(s)	63, 625
MaeI	CTAG	2 cut(s)	312, 408
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	4 cut(s)	95, 327, 406, 502
MboI	GATC	4 cut(s)	93, 325, 404, 500
MboII	GAAGA	7 cut(s)	233, 437, 438, 574, 582, 604, 641
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	4 cut(s)	99, 113, 139, 413
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	272, 404, 463, 576
MroXI	GAANNNNTTC	2 cut(s)	366, 436
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	2 cut(s)	157, 467
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	3 cut(s)	91, 150, 516
MvaI	CCWGG	3 cut(s)	91, 150, 516
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	4 cut(s)	93, 325, 404, 500
NlaIV	GGNNCC	2 cut(s)	147, 327
PdmI	GAANNNNTTC	2 cut(s)	366, 436
PfeI	GAWTC	3 cut(s)	167, 185, 597
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	156, 159, 196, 466, 481, 484
PshAI	GACNNNNGTC	1 cut(s)	510
Psp6I	CCWGG	3 cut(s)	89, 148, 514
PspGI	CCWGG	3 cut(s)	89, 148, 514
PspN4I	GGNNCC	2 cut(s)	147, 327
PspPI	GGNCC	2 cut(s)	512, 522
PstI	CTGCAG	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	2 cut(s)	157, 467
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	6 cut(s)	155, 158, 195, 465, 480, 483
Sau3AI	GATC	4 cut(s)	93, 325, 404, 500
Sau96I	GGNCC	2 cut(s)	512, 522
ScrFI	CCNGG	3 cut(s)	91, 150, 516
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	9 cut(s)	159, 264, 297, 358, 396, 469, 520, 577, 591
SfaNI	GCATC	2 cut(s)	63, 625
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	2 cut(s)	512, 522
SmiMI	CAYNNNNRTG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	4 cut(s)	99, 113, 139, 413
SsiI	CCGC	3 cut(s)	58, 479, 531
SspMI	CTAG	2 cut(s)	312, 408
StyD4I	CCNGG	3 cut(s)	89, 148, 514
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	79, 96, 209
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	99, 113, 139, 413
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	167, 185, 597
TseI	GCWGC	5 cut(s)	154, 157, 194, 464, 482
TspDTI	ATGAA	4 cut(s)	191, 285, 429, 642
TspGWI	ACGGA	1 cut(s)	210
VpaK11BI	GGWCC	2 cut(s)	512, 522
XapI	RAATTY	4 cut(s)	99, 113, 139, 413
XmnI	GAANNNNTTC	2 cut(s)	366, 436
XspI	CTAG	2 cut(s)	312, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.