MD10G1184400.v1.1

Chromatin modification-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006357
Physical Location & Seq
Reverse (-)
27751913 .. 27755015
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1184400.v1.1.491

Sequence Viewer

Length: 474 bp
ATGAAAATGGATTCAGAAGCGCAAAAGGCGTCGAGCAATAATCCGTCGGTAATGCTCGCTTCTCTTCTGAGTAGGAGAGCCAAGCTTCAAGATGAACTCCGAGGCATTGAAAAACAGGTGTATGATTTGGAGACTAGTTATCTGCAGGATCCAACTCAATGTGGAAATGTACTAAAAGGTTTTGAAGGGTTTCTATCATCATCCAAGAACACTAACCTCTTGAAGCGATCTAGGAAATTTCAGCCTGAAGATAGAATGTTTTCATTATCTTCTGTTACATCACCAGCAGCAGAGGAACTTGCGGCTGCACGAGATGATGGGAGGTCAGACTTTGGTCCAGGTCGGTCCAAAGGCGGTATATATGCAAATGGGCAAGGAAAACCGAAGAAGGGAAGACCTGCACCGAGGGACGTGAAGAGAATCAGGCCAAGCGAACAAGATTACGACTATGAAGATGATGCCGAGATGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NuA4

Protein Analysis

158

Amino Acids

17.43

Weight (kDa)

8.62

Isoelectric Point (pI)

66.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NuA4 PF09340 19 - 95 5.9e-27 Histone acetyltransferase subunit NuA4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 406
AciI CCGC 2 cut(s) 302, 354
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 89, 110, 185, 223
AhlI ACTAGT 1 cut(s) 134
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 143, 156
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 2 cut(s) 287, 305
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 2 cut(s) 189, 259
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 335, 345
AsuHPI GGTGA 1 cut(s) 273
AvaII GGWCC 2 cut(s) 335, 345
BamHI GGATCC 1 cut(s) 148
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 292, 299
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 231
BfmI CTRYAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 406
BisI GCNGC 3 cut(s) 288, 303, 306
BlsI GCNGC 3 cut(s) 289, 304, 307
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 335, 345
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 335, 345
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 448
BoxI GACNNNNGTC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 100, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 100, 404
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 292, 299
BsgI GTGCAG 2 cut(s) 291, 384
BshFI GGCC 1 cut(s) 427
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 427
Bsp143I GATC 2 cut(s) 148, 227
BspACI CCGC 2 cut(s) 302, 354
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 2 cut(s) 143, 156
BssECI CCNNGG 2 cut(s) 100, 404
BssMI GATC 2 cut(s) 148, 227
BssNI GRCGYC 1 cut(s) 29
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 339
Bst6I CTCTTC 2 cut(s) 69, 410
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 151, 230
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 148, 227
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 339
BstPAI GACNNNNGTC 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 292, 299
BstV2I GAAGAC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 427
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 335, 345
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 170
CviJI RGCY 5 cut(s) 80, 85, 244, 305, 427
CviKI_1 RGCY 5 cut(s) 80, 85, 244, 305, 427
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 1 cut(s) 68
DpnI GATC 2 cut(s) 150, 229
DpnII GATC 2 cut(s) 148, 227
Eam1104I CTCTTC 2 cut(s) 69, 410
EarI CTCTTC 2 cut(s) 69, 410
Eco47I GGWCC 2 cut(s) 335, 345
Eco57I CTGAAG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 337
FaiI YATR 6 cut(s) 123, 359, 361, 363, 450, 472
FaqI GGGAC 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 288, 303, 306
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 288, 303, 306
FspBI CTAG 2 cut(s) 135, 231
GlaI GCGC 1 cut(s) 21
GluI GCNGC 3 cut(s) 288, 303, 306
HaeIII GGCC 1 cut(s) 427
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 11, 420
HphI GGTGA 1 cut(s) 273
Hpy188I TCNGA 4 cut(s) 16, 69, 101, 328
Hpy188III TCNNGA 2 cut(s) 89, 220
Hpy99I CGWCG 2 cut(s) 34, 49
HpyAV CCTTC 2 cut(s) 179, 382
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 145, 308, 365, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 29
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 2 cut(s) 148, 227
LpnPI CCDG 8 cut(s) 101, 131, 258, 297, 324, 351, 409, 411
Lsp1109I GCAGC 2 cut(s) 292, 299
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 135, 231
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 150, 229
MboI GATC 2 cut(s) 148, 227
MboII GAAGA 7 cut(s) 56, 260, 261, 397, 405, 427, 464
MflI RGATCY 1 cut(s) 148
MluCI AATT 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 5 cut(s) 95, 227, 286, 315, 399
MroXI GAANNNNTTC 2 cut(s) 189, 259
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 148, 227
NlaIV GGNNCC 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 189, 259
PfeI GAWTC 2 cut(s) 11, 420
PkrI GCNGC 3 cut(s) 289, 304, 307
PshAI GACNNNNGTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 335, 345
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SatI GCNGC 3 cut(s) 288, 303, 306
Sau3AI GATC 2 cut(s) 148, 227
Sau96I GGNCC 2 cut(s) 335, 345
ScrFI CCNGG 1 cut(s) 339
SetI ASST 8 cut(s) 87, 120, 181, 219, 326, 343, 400, 414
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 143
SinI GGWCC 2 cut(s) 335, 345
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 302, 354
SspMI CTAG 2 cut(s) 135, 231
StyD4I CCNGG 1 cut(s) 337
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 32
TaqII GACCGA 1 cut(s) 333
TasI AATT 1 cut(s) 236
TatI WGTACW 1 cut(s) 169
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 2 cut(s) 11, 420
TseI GCWGC 2 cut(s) 287, 305
TspDTI ATGAA 4 cut(s) 17, 108, 252, 465
TspGWI ACGGA 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 335, 345
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 2 cut(s) 189, 259
XspI CTAG 2 cut(s) 135, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.