Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031243.1

Orthogroup ID

OG0006357

Physical Location & Seq

Genomic Coordinates Reverse (-)

766 .. 3015

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtcgtccgattggaccacggtgacgtcggcatctgcgttatctgttcgccacctgtcgagcgattcgggtgtgaaaatggattcagaagcgcaaaatccatcgcaagtgcttgctacactcctcagcaagagaaccaagcttcaagacgaactcagaggaattgagaaacaggtctatgatctagagactacgtatctgcaggacccgagtcaatgtggcaatgtattaaaagggtttgaagggtttctttcttcatcaaagagcactgccttcctgaagcgatctaggaaatttcaacctgaagacaggctcttctcattatcttctgtgacatcaccagcagctgaagaacttacagctggacgagatgatgggagatcagactttggtcccggccgttcaaaagggggtatatacgcgaatgggcaaggaaaaccgaagaaaggaagacctactccaagagatgcaaagagaatcaggccgtcgagtgaacaagattatgactatgaagatgatcctgatatgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NuA4

Protein Analysis

177

Amino Acids

19.49

Weight (kDa)

6.61

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385 AT4G14385
malus_domestica	MD05G1197800.v1.1 MD10G1184400.v1.1
prunus_persica	Prupe.8G224100_v2.0.a1 Prupe.8G224100_v2.0.a1 Prupe.8G224100_v2.0.a1
pyrus_communis	pycom10g15970
rosa_chinensis	RchiOBHm_Chr6g0288171
rosa_laevigata	RLG00000012432
rosa_multiflora	Rmu_co8436877.1_g000001 Rmu_sc0002207.1_g000008 Rmu_sc0031243.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180420
rosa_rugosa	Rorug06G0194700
rosa_samantha	Rh6AG305100 Rh6CG319100 Rh6DG304200
rosa_wichuraiana	Rw0G014440 Rw6G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	422
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	3 cut(s)	299, 324, 369
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	146, 242, 299, 405
AluBI	AGCT	3 cut(s)	142, 347, 362
AluI	AGCT	3 cut(s)	142, 347, 362
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	397, 482
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	3 cut(s)	15, 205, 392
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	34, 330
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	3 cut(s)	15, 205, 392
BbsI	GAAGAC	2 cut(s)	312, 457
Bbv12I	GWGCWC	1 cut(s)	269
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	109, 368
BceAI	ACGGC	2 cut(s)	384, 469
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	185, 288
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	3 cut(s)	15, 205, 392
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	15, 205, 392
BmiI	GGNNCC	2 cut(s)	207, 394
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	41, 457
BoxI	GACNNNNGTC	2 cut(s)	210, 390
BpiI	GAAGAC	2 cut(s)	312, 457
Bpu10I	CCTNAGC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	139, 169
BseRI	GAGGAG	1 cut(s)	113
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	356
Bsh1236I	CGCG	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	399, 484
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	399, 484
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	4 cut(s)	181, 284, 380, 517
BspANI	GGCC	2 cut(s)	399, 484
BspCNI	CTCAG	2 cut(s)	138, 168
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	207, 394
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	181, 284, 380, 517
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	125, 155
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	4 cut(s)	184, 287, 383, 520
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	4 cut(s)	181, 284, 380, 517
BstMCI	CGRYCG	1 cut(s)	400
BstPAI	GACNNNNGTC	2 cut(s)	210, 390
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	200
BstSNI	TACGTA	1 cut(s)	195
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	2 cut(s)	312, 457
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	399, 484
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	15, 205, 392
CviJI	RGCY	6 cut(s)	142, 313, 347, 362, 399, 484
CviKI_1	RGCY	6 cut(s)	142, 313, 347, 362, 399, 484
DdeI	CTNAG	2 cut(s)	125, 155
DpnI	GATC	4 cut(s)	183, 286, 382, 519
DpnII	GATC	4 cut(s)	181, 284, 380, 517
EaeI	YGGCCR	1 cut(s)	397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EclXI	CGGCCG	1 cut(s)	397
Eco105I	TACGTA	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	15, 205, 392
Eco52I	CGGCCG	1 cut(s)	397
Eco57I	CTGAAG	3 cut(s)	299, 324, 369
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	205
FaiI	YATR	6 cut(s)	180, 416, 418, 504, 510, 527
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	185, 288
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	399, 484
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	4 cut(s)	65, 83, 211, 477
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	34, 330
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	4 cut(s)	10, 88, 158, 385
Hpy188III	TCNNGA	4 cut(s)	146, 185, 277, 521
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	2 cut(s)	31, 490
HpyAV	CCTTC	2 cut(s)	236, 283
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	26, 194
HpyCH4V	TGCA	2 cut(s)	202, 470
HpyF3I	CTNAG	2 cut(s)	125, 155
HpySE526I	ACGT	2 cut(s)	26, 194
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	181, 284, 380, 517
LguI	GCTCTTC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	41, 457
MaeI	CTAG	2 cut(s)	185, 288
MaeII	ACGT	2 cut(s)	26, 194
MaeIII	GTNAC	2 cut(s)	22, 331
MalI	GATC	4 cut(s)	183, 286, 382, 519
MboI	GATC	4 cut(s)	181, 284, 380, 517
MboII	GAAGA	8 cut(s)	246, 307, 317, 318, 362, 454, 462, 524
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	162, 293
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	134, 152
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	347, 362
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	422
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	181, 284, 380, 517
NlaIV	GGNNCC	2 cut(s)	207, 394
NmuCI	GTSAC	2 cut(s)	22, 331
PciSI	GCTCTTC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	65, 83, 477
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Ppu21I	YACGTR	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	205
PshAI	GACNNNNGTC	2 cut(s)	210, 390
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	207, 394
PspPI	GGNCC	3 cut(s)	15, 205, 392
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	347, 362
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	4 cut(s)	181, 284, 380, 517
Sau96I	GGNCC	3 cut(s)	15, 205, 392
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	9 cut(s)	29, 57, 144, 177, 197, 304, 349, 364, 457
SfaNI	GCATC	2 cut(s)	41, 457
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	3 cut(s)	15, 205, 392
SnaBI	TACGTA	1 cut(s)	195
Sse9I	AATT	2 cut(s)	162, 293
SspMI	CTAG	2 cut(s)	185, 288
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	29, 197
TaqI	TCGA	2 cut(s)	59, 488
TasI	AATT	2 cut(s)	162, 293
TfiI	GAWTC	3 cut(s)	65, 83, 477
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	22, 331
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	2 cut(s)	22, 331
TspDTI	ATGAA	2 cut(s)	246, 525
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	3 cut(s)	15, 205, 392
XapI	RAATTY	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	185, 288
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.