Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012664

Physical Location & Seq

Genomic Coordinates Reverse (-)

42168887 .. 42169798

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1289100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACCCTCTGAAACACAAGTCAAACATGAAAGATGGACGGTCACCAGCGTCTCTGCACTCCAATTTCTTCTCCTCCCTGAAACAGGTTGAGAAGAGACTGAAATTAGAGAACCCAGAAAAAAAATCCAGTATTTCGCCATCACCATTGTTACAAAGCAACAAGCTTTTAACAGAAGAGGAATCACTAAGCTCACCGTTACATCTCCACTTTGACCAGTCCAATAACAACAACAATCAGAGCTTAAACGCATTGCAAGAGAGCGGTGAACCTCCAGAGGCGTTCCTCTCATGCTCCCTACTTTTCCCACCAACCCAACAAAACCCACCTCAAACGAATACCCTGCATCAACCCGAAACCATCAATGACACCGAAAATTATGCAATCGGCGATATTGGAGAGTTAATTGAACTCTTGGGTTTGTCTAATTGTGAAGGAGGAGAGGAAGAAAGGGGTGATTGTTGTGGTGGTGGTAGCGGCATTGGTGGTGGTTCTTGTCGTTGTCAAGGCGGGTTTTATGAGAAGATTGTTGGGGTGAAGGGGCCGAAGTGTGGGAAAGAAGTGGAGAGGTTGGAGGGTTGGATTAAGTGCTTTATGAATGGTGGTGGGGAGGGGAGTATTGAACCTTTCAGGTTGGCACATTTGCTTTTGGGAAAAGCTGCTTTTGTTTCTGATGGTGCTGATCATGGTTTTGGAGGCTTGGAATTCCCTTCGACTGTTGGGGATTTTTTACTCAAAGATCCTCCCCCAACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.11

Weight (kDa)

5.07

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012664)

Species	Orthologous Gene IDs
malus_domestica	MD05G1289100.v1.1
prunus_persica	Prupe.4G076400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013271 RchiOBHm_Chr5g0013301
rosa_laevigata	RLG00000032003 RLG00000032006
rosa_multiflora	Rmu_sc0003458.1_g000010 Rmu_sc0004521.1_g000020
rosa_roxburghii	Rroxscaffold_1G00063240
rosa_rugosa	Rorug05G0008600 Rorug05G0008800
rosa_samantha	Rh5AG103300 Rh5AG104100 Rh5BG100100 Rh5CG111300 Rh5CG111700 Rh5DG098900
rosa_wichuraiana	Rw5G009020 Rw5G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	264
AciI	CCGC	3 cut(s)	264, 477, 510
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	1 cut(s)	704
AfiI	CCNNNNNNNGG	2 cut(s)	85, 551
AgsI	TTSAA	2 cut(s)	410, 623
AluBI	AGCT	4 cut(s)	166, 192, 243, 659
AluI	AGCT	4 cut(s)	166, 192, 243, 659
Alw26I	GTCTC	2 cut(s)	57, 91
AlwI	GGATC	1 cut(s)	734
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	704
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	6 cut(s)	36, 135, 186, 278, 467, 547
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	4 cut(s)	29, 148, 368, 668
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 362, 396
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	57, 91
BisI	GCNGC	2 cut(s)	478, 660
BlsI	GCNGC	2 cut(s)	479, 661
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	543
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 551
Bse1I	ACTGG	2 cut(s)	129, 217
Bse3DI	GCAATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	85, 551
BseMI	GCAATG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	129, 217
BseRI	GAGGAG	2 cut(s)	64, 453
BseXI	GCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	85, 551
BsmAI	GTCTC	2 cut(s)	57, 91
BsmBI	CGTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	682, 739
BspACI	CCGC	3 cut(s)	264, 477, 510
BspANI	GGCC	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	543
BspPI	GGATC	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	129, 217
BssMI	GATC	2 cut(s)	682, 739
Bst4CI	ACNGT	3 cut(s)	42, 198, 718
Bst6I	CTCTTC	2 cut(s)	89, 171
BstDEI	CTNAG	1 cut(s)	188
BstEII	GGTNACC	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	685, 742
BstMAI	GTCTC	2 cut(s)	57, 91
BstMBI	GATC	2 cut(s)	682, 739
BstPI	GGTNACC	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	39
CviAII	CATG	3 cut(s)	28, 291, 686
CviJI	RGCY	6 cut(s)	166, 192, 243, 544, 659, 699
CviKI_1	RGCY	6 cut(s)	166, 192, 243, 544, 659, 699
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	684, 741
DpnII	GATC	2 cut(s)	682, 739
Eam1104I	CTCTTC	2 cut(s)	89, 171
EarI	CTCTTC	2 cut(s)	89, 171
Eco91I	GGTNACC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	704
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	3 cut(s)	31, 294, 689
FaiI	YATR	6 cut(s)	29, 292, 381, 519, 596, 687
FatI	CATG	3 cut(s)	27, 290, 685
FauI	CCCGC	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	478, 660
Fsp4HI	GCNGC	2 cut(s)	478, 660
GluI	GCNGC	2 cut(s)	478, 660
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	544
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	31, 294, 689
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	6 cut(s)	36, 135, 186, 278, 467, 547
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	12, 240, 673
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	428, 532, 720
HpyCH4III	ACNGT	3 cut(s)	42, 198, 718
HpyCH4V	TGCA	4 cut(s)	58, 256, 346, 383
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	31, 294, 689
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	682, 739
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	9 cut(s)	60, 71, 92, 129, 142, 230, 288, 356, 616
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	42, 150, 198
MalI	GATC	2 cut(s)	684, 741
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	682, 739
MboII	GAAGA	5 cut(s)	61, 106, 188, 458, 535
MflI	RGATCY	1 cut(s)	739
MluCI	AATT	6 cut(s)	64, 104, 376, 405, 427, 704
MmeI	TCCRAC	2 cut(s)	552, 560
MseI	TTAA	4 cut(s)	170, 245, 404, 585
NdeII	GATC	2 cut(s)	682, 739
NlaIII	CATG	3 cut(s)	31, 294, 689
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	479, 661
PspEI	GGTNACC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	739
SaqAI	TTAA	4 cut(s)	170, 245, 404, 585
SatI	GCNGC	2 cut(s)	478, 660
Sau3AI	GATC	2 cut(s)	682, 739
Sau96I	GGNCC	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	355
Sse9I	AATT	6 cut(s)	64, 104, 376, 405, 427, 704
SsiI	CCGC	3 cut(s)	264, 477, 510
TaaI	ACNGT	3 cut(s)	42, 198, 718
TaqI	TCGA	1 cut(s)	713
TasI	AATT	6 cut(s)	64, 104, 376, 405, 427, 704
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	4 cut(s)	170, 245, 404, 585
Tru9I	TTAA	4 cut(s)	170, 245, 404, 585
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	17, 44, 611
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.