Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012664

Physical Location & Seq

Genomic Coordinates Forward (+)

10138131 .. 10138784

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGAGATAGGCGACCCCTGCACTTCAATTTCTTCTCTTCCCTGAAGCAGGTTGAGAAGAGATTGAAACTAGAACACCCATCTGAACAATCTACTGTATTAACATTTCCATTGCTAGACAGCAACAAGTTATTAACAGAATCACTAAGCTCATCCATGTACCTTGATTTGGATCCCTCCAACAACAACAACCATTACAGTTCTAGTACACTCCAAGACAGTAGTGAAGCCCCTGAAGCATTCCTCTCATGCTCTCCACAGTTTATACCAACCCAAGAGAACCCAACCCAGCCAAATGCCCTGAATGACCCCAAAACTATCAATGACACTGAAGCTGAAGCCGTCGACGATATTGAAAAGTTGATTCAACTCTTGGGCTTGTCTAGTTGCCAGGAAGGAGATGAAGAAAAGGCTGGTTTGGACTTGAAGTGTGGAGGTAGTGAAAATGAGGGTAATTCTTGTCATTGTGAAGGCGGGTTTTATGAGAAGATTGTTGGGGTGAAGGGGCCAAAGTGTGGGAGAGAAGTGGAGAGGTTGGAGGGTTGGATTAACTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.65

Weight (kDa)

4.58

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012664)

Species	Orthologous Gene IDs
malus_domestica	MD05G1289100.v1.1
prunus_persica	Prupe.4G076400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013271 RchiOBHm_Chr5g0013301
rosa_laevigata	RLG00000032003 RLG00000032006
rosa_multiflora	Rmu_sc0003458.1_g000010 Rmu_sc0004521.1_g000020
rosa_roxburghii	Rroxscaffold_1G00063240
rosa_rugosa	Rorug05G0008600 Rorug05G0008800
rosa_samantha	Rh5AG103300 Rh5AG104100 Rh5BG100100 Rh5CG111300 Rh5CG111700 Rh5DG098900
rosa_wichuraiana	Rw5G009020 Rw5G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	2 cut(s)	167, 180
AcuI	CTGAAG	4 cut(s)	65, 255, 351, 357
AfaI	GTAC	2 cut(s)	161, 208
AfiI	CCNNNNNNNGG	3 cut(s)	49, 169, 515
AgsI	TTSAA	5 cut(s)	28, 67, 356, 368, 427
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	150, 335
AluI	AGCT	2 cut(s)	150, 335
AlwI	GGATC	2 cut(s)	167, 180
AoxI	GGCC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	511
BamHI	GGATCC	1 cut(s)	172
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	4 cut(s)	71, 116, 204, 384
BfuAI	ACCTGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	174, 507
BmrFI	CCNGG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 169, 515
Bse3DI	GCAATG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	152
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	49, 169, 515
BseMI	GCAATG	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	49, 169, 515
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	508
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	174, 507
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	167, 180
BsrDI	GCAATG	1 cut(s)	110
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	4 cut(s)	97, 200, 221, 261
Bst6I	CTCTTC	2 cut(s)	43, 53
BstDEI	CTNAG	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 236
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	160, 207
CviAII	CATG	2 cut(s)	157, 249
CviJI	RGCY	8 cut(s)	150, 230, 292, 335, 341, 378, 413, 508
CviKI_1	RGCY	8 cut(s)	150, 230, 292, 335, 341, 378, 413, 508
CviQI	GTAC	2 cut(s)	160, 207
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	43, 53
EarI	CTCTTC	2 cut(s)	43, 53
Eco57I	CTGAAG	4 cut(s)	65, 255, 351, 357
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	160, 252
FaiI	YATR	4 cut(s)	158, 250, 266, 483
FatI	CATG	2 cut(s)	156, 248
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	345
FokI	GGATG	1 cut(s)	139
FspBI	CTAG	4 cut(s)	71, 116, 204, 384
GsaI	CCCAGC	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	160, 252
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	140, 364
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	209, 346
Hpy188I	TCNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	209, 346
Hpy99I	CGWCG	2 cut(s)	347, 350
HpyAV	CCTTC	3 cut(s)	389, 464, 496
HpyCH4III	ACNGT	4 cut(s)	97, 200, 221, 261
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 236
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	160, 252
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	32, 35, 56, 246, 302, 314, 377, 399, 404
MaeI	CTAG	4 cut(s)	71, 116, 204, 384
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	5 cut(s)	25, 30, 70, 416, 499
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	2 cut(s)	28, 454
MmeI	TCCRAC	3 cut(s)	204, 516, 524
MnlI	CCTC	6 cut(s)	187, 254, 428, 442, 525, 532
MseI	TTAA	3 cut(s)	101, 134, 549
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	19, 236
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	160, 252
NlaIV	GGNNCC	2 cut(s)	174, 507
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	140, 364
PflMI	CCANNNNNTGG	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	174, 507
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	161, 208
RsaNI	GTAC	2 cut(s)	160, 207
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	101, 134, 549
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	392
SetI	ASST	6 cut(s)	54, 152, 165, 337, 439, 536
SgrDI	CGTCGACG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	28, 454
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	4 cut(s)	71, 116, 204, 384
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	97, 200, 221, 261
TaqI	TCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	28, 454
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	140, 364
Tru1I	TTAA	3 cut(s)	101, 134, 549
Tru9I	TTAA	3 cut(s)	101, 134, 549
TscAI	CASTG	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	4 cut(s)	71, 116, 204, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.