Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012664

Physical Location & Seq

Genomic Coordinates Reverse (-)

85178166 .. 85178980

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAGATAGGCGACCCCTGCACTTCAATTTCTTCTCTTCCCTGAAGCAGGTTGAGAAGAGATTGAAATTAGAACACCCATCTGAACAATCTACTGTATTATCATCTCCATTGCTAGAAAGCAACAAGTTATTAACAGAATCACTAAGCTCACCCATATACCTTGATTTGGATCCTTCCAACAACAACAACCATTACAGTTCTAGTACACTCCAAAACAGTAGTGAAGCCCCTGAAGCATTCCTCTCATGCTCTCCACAGTTTATACCAACCCAAGAGAACCCAACTCAGCCAAATGCCCTGAATGACCCCAAAACTATCAATGACACTGAAGCTGAAGCCGTCGACGATATTGAACAGTTGATTCAACTCTTGGGTTTGTCAAGTTGCCAGGAAGGAGATGAAGAAAAGGCTGGTTTGGACTTGAAGTGTGGAGTTAGTGAAAATGGGGGTAATTCTTGTCATTGTGAAGGCGGGTTTTATGAGAAGATTGTTGGGGTGAAGGGGCCAAAGTGTGGGAGAGAAGTGGAGAGGTTGGAGGGTTGGATTAACTACTTTTTGAATGGTGATGGGGAGGGAAAAATTGAGCCTTTCAGGTTGGCACATTTGCTTTTGAGTAAAGCTGCTTTTGTTTCTGAGGGTGCTGATCATGGTTTTGGAGGCTTGGACTTCCCTTCAACGATTGGGGATTTTCTGCGCAATGATCCTCCAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.14

Weight (kDa)

4.6

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012664)

Species	Orthologous Gene IDs
malus_domestica	MD05G1289100.v1.1
prunus_persica	Prupe.4G076400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013271 RchiOBHm_Chr5g0013301
rosa_laevigata	RLG00000032003 RLG00000032006
rosa_multiflora	Rmu_sc0003458.1_g000010 Rmu_sc0004521.1_g000020
rosa_roxburghii	Rroxscaffold_1G00063240
rosa_rugosa	Rorug05G0008600 Rorug05G0008800
rosa_samantha	Rh5AG103300 Rh5AG104100 Rh5BG100100 Rh5CG111300 Rh5CG111700 Rh5DG098900
rosa_wichuraiana	Rw5G009020 Rw5G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	3 cut(s)	167, 180, 698
AcuI	CTGAAG	4 cut(s)	65, 255, 351, 357
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	49, 169, 515
AgsI	TTSAA	7 cut(s)	28, 67, 356, 368, 427, 562, 678
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	150, 335, 623
AluI	AGCT	3 cut(s)	150, 335, 623
AlwI	GGATC	3 cut(s)	167, 180, 698
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	144, 511, 578
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	2 cut(s)	88, 563
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	392
BclI	TGATCA	1 cut(s)	646
BfaI	CTAG	2 cut(s)	116, 204
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	174, 507
BmrFI	CCNGG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 169, 515
Bse3DI	GCAATG	2 cut(s)	110, 706
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	392
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	49, 169, 515
BseMI	GCAATG	2 cut(s)	110, 706
BseMII	CTCAG	2 cut(s)	302, 627
BseXI	GCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	49, 169, 515
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	172, 646, 703
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	2 cut(s)	301, 628
BspLI	GGNNCC	2 cut(s)	174, 507
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	167, 180, 698
BsrDI	GCAATG	2 cut(s)	110, 706
BssMI	GATC	3 cut(s)	172, 646, 703
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	5 cut(s)	97, 200, 221, 261, 360
Bst6I	CTCTTC	2 cut(s)	43, 53
BstDEI	CTNAG	3 cut(s)	146, 288, 636
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	3 cut(s)	175, 649, 706
BstMBI	GATC	3 cut(s)	172, 646, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 236
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	2 cut(s)	249, 650
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	3 cut(s)	146, 288, 636
DpnI	GATC	3 cut(s)	174, 648, 705
DpnII	GATC	3 cut(s)	172, 646, 703
Eam1104I	CTCTTC	2 cut(s)	43, 53
EarI	CTCTTC	2 cut(s)	43, 53
Eco57I	CTGAAG	4 cut(s)	65, 255, 351, 357
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	252, 653
FaiI	YATR	6 cut(s)	158, 160, 250, 266, 483, 651
FatI	CATG	2 cut(s)	248, 649
FauI	CCCGC	1 cut(s)	467
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	624
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	2 cut(s)	116, 204
FspI	TGCGCA	1 cut(s)	698
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	2 cut(s)	252, 653
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	140, 364
HphI	GGTGA	3 cut(s)	144, 511, 578
Hpy166II	GTNNAC	2 cut(s)	209, 346
Hpy188I	TCNGA	2 cut(s)	85, 637
Hpy8I	GTNNAC	2 cut(s)	209, 346
Hpy99I	CGWCG	2 cut(s)	347, 350
HpyAV	CCTTC	5 cut(s)	186, 389, 464, 496, 684
HpyCH4III	ACNGT	5 cut(s)	97, 200, 221, 261, 360
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 236
HpyF3I	CTNAG	3 cut(s)	146, 288, 636
Hsp92II	CATG	2 cut(s)	252, 653
HspAI	GCGC	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	172, 646, 703
LpnPI	CCDG	9 cut(s)	32, 35, 56, 246, 314, 377, 399, 404, 580
Lsp1109I	GCAGC	1 cut(s)	610
MaeI	CTAG	2 cut(s)	116, 204
MalI	GATC	3 cut(s)	174, 648, 705
MboI	GATC	3 cut(s)	172, 646, 703
MboII	GAAGA	5 cut(s)	25, 30, 70, 416, 499
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	4 cut(s)	28, 68, 454, 582
MmeI	TCCRAC	3 cut(s)	204, 516, 524
MnlI	CCTC	7 cut(s)	254, 525, 532, 568, 631, 653, 717
MseI	TTAA	3 cut(s)	134, 549, 718
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	19, 236
NdeII	GATC	3 cut(s)	172, 646, 703
NlaIII	CATG	2 cut(s)	252, 653
NlaIV	GGNNCC	2 cut(s)	174, 507
NsbI	TGCGCA	1 cut(s)	698
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	140, 364
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	174, 507
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	134, 549, 718
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	3 cut(s)	172, 646, 703
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	392
SetI	ASST	7 cut(s)	54, 152, 165, 337, 536, 599, 625
SgrDI	CGTCGACG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	28, 68, 454, 582
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	2 cut(s)	116, 204
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	97, 200, 221, 261, 360
TaqI	TCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	28, 68, 454, 582
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	140, 364
Tru1I	TTAA	3 cut(s)	134, 549, 718
Tru9I	TTAA	3 cut(s)	134, 549, 718
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	2 cut(s)	116, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.