Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003458.1

Orthogroup ID

OG0012664

Physical Location & Seq

Genomic Coordinates Forward (+)

42412 .. 43314

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003458.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgggagataggcgacccccgcacttcaatttcttctcttctctgaagcaggttgagaagagattgaaactagaatacccatctgaacaatcgactccatcacaatcaccattggtagaaaggaacaagttattaacagaatcattaagctcacccatataccttgatttggatccctccaacaacaacaaccattacagttctagtacactccaagacagtagtgaagcccctgaagtattcctctcatgctctccacagtttataccaacccaagagaacccaactcagccaaatgccctgaatgacccgaaaactatcaatgacactgaaggtgaagccatcgtcgatgatattgaacagttgattcaactcttgggtttgtcaagttgccaggaaggagatgaagaaaaggctggtttggagttgaagtgtggaggtagtgaaaatgggggcgggttttatgagaagattgttggggtgaaggggccaaagtgtgggagagaagtggagaggttggagggttggattaactactttttgaatggtgatggggagggaaagattgagcctttcaggctggcacatttgcttttgagtaaagctgcttttgtttctgagggtgctgatcatggttttggaggcttggacttcccttcaacgattggggattttctgcgcaacgatcctccaacagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.59

Weight (kDa)

4.56

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012664)

Species	Orthologous Gene IDs
malus_domestica	MD05G1289100.v1.1
prunus_persica	Prupe.4G076400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013271 RchiOBHm_Chr5g0013301
rosa_laevigata	RLG00000032003 RLG00000032006
rosa_multiflora	Rmu_sc0003458.1_g000010 Rmu_sc0004521.1_g000020
rosa_roxburghii	Rroxscaffold_1G00063240
rosa_rugosa	Rorug05G0008600 Rorug05G0008800
rosa_samantha	Rh5AG103300 Rh5AG104100 Rh5BG100100 Rh5CG111300 Rh5CG111700 Rh5DG098900
rosa_wichuraiana	Rw5G009020 Rw5G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	497
AciI	CCGC	2 cut(s)	20, 456
AclWI	GGATC	3 cut(s)	167, 180, 680
AcuI	CTGAAG	3 cut(s)	65, 255, 351
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	169, 497
AgsI	TTSAA	7 cut(s)	28, 67, 359, 371, 430, 544, 660
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	150, 605
AluI	AGCT	2 cut(s)	150, 605
AlwI	GGATC	3 cut(s)	167, 180, 680
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	5 cut(s)	99, 144, 347, 493, 560
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	4 cut(s)	88, 106, 350, 545
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	628
BfaI	CTAG	2 cut(s)	71, 204
BfuAI	ACCTGC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	174, 489
BmrFI	CCNGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 497
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	395
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	169, 497
BseMII	CTCAG	2 cut(s)	302, 609
BseXI	GCAGC	1 cut(s)	592
BshFI	GGCC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	169, 497
BsnI	GGCC	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	172, 628, 685
BspACI	CCGC	2 cut(s)	20, 456
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	2 cut(s)	301, 610
BspLI	GGNNCC	2 cut(s)	174, 489
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	167, 180, 680
BssMI	GATC	3 cut(s)	172, 628, 685
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	4 cut(s)	200, 221, 261, 363
Bst6I	CTCTTC	2 cut(s)	43, 53
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	288, 618
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	3 cut(s)	175, 631, 688
BstMBI	GATC	3 cut(s)	172, 628, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 577
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	582
CfoI	GCGC	1 cut(s)	681
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	2 cut(s)	249, 632
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	288, 618
DpnI	GATC	3 cut(s)	174, 630, 687
DpnII	GATC	3 cut(s)	172, 628, 685
Eam1104I	CTCTTC	2 cut(s)	43, 53
EarI	CTCTTC	2 cut(s)	43, 53
Eco57I	CTGAAG	3 cut(s)	65, 255, 351
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	2 cut(s)	252, 635
FaiI	YATR	6 cut(s)	158, 160, 250, 266, 465, 633
FatI	CATG	2 cut(s)	248, 631
FauI	CCCGC	2 cut(s)	27, 449
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	1 cut(s)	606
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	71, 204
FspI	TGCGCA	1 cut(s)	680
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	2 cut(s)	252, 635
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	94, 140, 367
HphI	GGTGA	5 cut(s)	99, 144, 347, 493, 560
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	45, 85, 619
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	326, 392, 478, 666
HpyCH4III	ACNGT	4 cut(s)	200, 221, 261, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 577
HpyF3I	CTNAG	2 cut(s)	288, 618
Hsp92II	CATG	2 cut(s)	252, 635
HspAI	GCGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	172, 628, 685
LpnPI	CCDG	8 cut(s)	35, 246, 314, 380, 402, 407, 562, 566
Lsp1109I	GCAGC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	71, 204
MalI	GATC	3 cut(s)	174, 630, 687
MboI	GATC	3 cut(s)	172, 628, 685
MboII	GAAGA	5 cut(s)	25, 30, 70, 419, 481
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	3 cut(s)	204, 498, 506
MnlI	CCTC	9 cut(s)	187, 254, 431, 507, 514, 550, 613, 635, 699
MseI	TTAA	4 cut(s)	134, 146, 531, 700
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	19, 577
NdeII	GATC	3 cut(s)	172, 628, 685
NlaIII	CATG	2 cut(s)	252, 635
NlaIV	GGNNCC	2 cut(s)	174, 489
NsbI	TGCGCA	1 cut(s)	680
PfeI	GAWTC	2 cut(s)	140, 367
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	174, 489
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	134, 146, 531, 700
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	3 cut(s)	172, 628, 685
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	7 cut(s)	54, 152, 165, 337, 442, 518, 607
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	20, 456
SspMI	CTAG	2 cut(s)	71, 204
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	4 cut(s)	200, 221, 261, 363
TaqI	TCGA	2 cut(s)	92, 348
TasI	AATT	1 cut(s)	28
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	140, 367
Tru1I	TTAA	4 cut(s)	134, 146, 531, 700
Tru9I	TTAA	4 cut(s)	134, 146, 531, 700
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	497
XspI	CTAG	2 cut(s)	71, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.