No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1289100.v1.1 |
| prunus_persica | Prupe.4G076400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0013271 RchiOBHm_Chr5g0013301 |
| rosa_laevigata | RLG00000032003 RLG00000032006 |
| rosa_multiflora | Rmu_sc0003458.1_g000010 Rmu_sc0004521.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00063240 |
| rosa_rugosa | Rorug05G0008600 Rorug05G0008800 |
| rosa_samantha | Rh5AG103300 Rh5AG104100 Rh5BG100100 Rh5CG111300 Rh5CG111700 Rh5DG098900 |
| rosa_wichuraiana | Rw5G009020 Rw5G009060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 49 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 524 |
| AccII | CGCG | 1 cut(s) | 13 |
| AclWI | GGATC | 1 cut(s) | 707 |
| AcsI | RAATTY | 1 cut(s) | 677 |
| AcuI | CTGAAG | 3 cut(s) | 168, 357, 666 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 58, 181, 524 |
| AgsI | TTSAA | 5 cut(s) | 362, 374, 433, 571, 687 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 486, 518 |
| AluBI | AGCT | 3 cut(s) | 207, 345, 632 |
| AluI | AGCT | 3 cut(s) | 207, 345, 632 |
| Alw26I | GTCTC | 1 cut(s) | 30 |
| AlwI | GGATC | 1 cut(s) | 707 |
| AoxI | GGCC | 1 cut(s) | 515 |
| ApeKI | GCWGC | 1 cut(s) | 632 |
| ApoI | RAATTY | 1 cut(s) | 677 |
| AspLEI | GCGC | 1 cut(s) | 13 |
| AspS9I | GGNCC | 2 cut(s) | 184, 515 |
| AsuHPI | GGTGA | 5 cut(s) | 102, 108, 156, 452, 520 |
| AvaII | GGWCC | 1 cut(s) | 184 |
| BbvI | GCAGC | 1 cut(s) | 619 |
| BccI | CCATC | 3 cut(s) | 97, 332, 437 |
| BclI | TGATCA | 1 cut(s) | 655 |
| BcoDI | GTCTC | 1 cut(s) | 30 |
| BfaI | CTAG | 1 cut(s) | 80 |
| BfuAI | ACCTGC | 1 cut(s) | 49 |
| BisI | GCNGC | 1 cut(s) | 633 |
| BlsI | GCNGC | 1 cut(s) | 634 |
| Bme18I | GGWCC | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 2 cut(s) | 184, 515 |
| BmsI | GCATC | 1 cut(s) | 319 |
| BpuEI | CTTGAG | 1 cut(s) | 225 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 58, 181, 524 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 58, 181, 524 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseRI | GAGGAG | 1 cut(s) | 37 |
| BseXI | GCAGC | 1 cut(s) | 619 |
| BseYI | CCCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 13 |
| BshFI | GGCC | 1 cut(s) | 517 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 58, 181, 524 |
| BsmAI | GTCTC | 1 cut(s) | 30 |
| BsmBI | CGTCTC | 1 cut(s) | 30 |
| BsmI | GAATGC | 2 cut(s) | 31, 245 |
| BsnI | GGCC | 1 cut(s) | 517 |
| Bsp143I | GATC | 2 cut(s) | 655, 712 |
| BspANI | GGCC | 1 cut(s) | 517 |
| BspCNI | CTCAG | 1 cut(s) | 359 |
| BspFNI | CGCG | 1 cut(s) | 13 |
| BspMI | ACCTGC | 1 cut(s) | 49 |
| BspPI | GGATC | 1 cut(s) | 707 |
| BssMI | GATC | 2 cut(s) | 655, 712 |
| Bst4CI | ACNGT | 2 cut(s) | 114, 366 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 1 cut(s) | 343 |
| BstDEI | CTNAG | 2 cut(s) | 158, 346 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 56 |
| BstFNI | CGCG | 1 cut(s) | 13 |
| BstHHI | GCGC | 1 cut(s) | 13 |
| BstKTI | GATC | 2 cut(s) | 658, 715 |
| BstMAI | GTCTC | 1 cut(s) | 30 |
| BstMBI | GATC | 2 cut(s) | 655, 712 |
| BstUI | CGCG | 1 cut(s) | 13 |
| BstV1I | GCAGC | 1 cut(s) | 619 |
| BsuRI | GGCC | 1 cut(s) | 517 |
| BtsI | GCAGTG | 3 cut(s) | 119, 215, 235 |
| BtsIMutI | CAGTG | 4 cut(s) | 119, 215, 235, 333 |
| BveI | ACCTGC | 1 cut(s) | 49 |
| Cac8I | GCNNGC | 1 cut(s) | 343 |
| CfoI | GCGC | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 2 cut(s) | 184, 515 |
| CseI | GACGC | 1 cut(s) | 12 |
| CviAII | CATG | 2 cut(s) | 255, 659 |
| CviJI | RGCY | 9 cut(s) | 73, 207, 341, 345, 419, 517, 598, 632, 672 |
| CviKI_1 | RGCY | 9 cut(s) | 73, 207, 341, 345, 419, 517, 598, 632, 672 |
| DdeI | CTNAG | 2 cut(s) | 158, 346 |
| DpnI | GATC | 2 cut(s) | 657, 714 |
| DpnII | GATC | 2 cut(s) | 655, 712 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| Eco47I | GGWCC | 1 cut(s) | 184 |
| Eco57I | CTGAAG | 3 cut(s) | 168, 357, 666 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 56 |
| EcoRI | GAATTC | 1 cut(s) | 677 |
| Esp3I | CGTCTC | 1 cut(s) | 30 |
| FaeI | CATG | 2 cut(s) | 258, 662 |
| FaiI | YATR | 4 cut(s) | 172, 256, 492, 660 |
| FatI | CATG | 2 cut(s) | 254, 658 |
| FbaI | TGATCA | 1 cut(s) | 655 |
| Fnu4HI | GCNGC | 1 cut(s) | 633 |
| Fsp4HI | GCNGC | 1 cut(s) | 633 |
| FspBI | CTAG | 1 cut(s) | 80 |
| GlaI | GCGC | 1 cut(s) | 12 |
| GluI | GCNGC | 1 cut(s) | 633 |
| GsaI | CCCAGC | 1 cut(s) | 195 |
| HaeIII | GGCC | 1 cut(s) | 517 |
| HgaI | GACGC | 1 cut(s) | 12 |
| HhaI | GCGC | 1 cut(s) | 13 |
| Hin1II | CATG | 2 cut(s) | 258, 662 |
| Hin6I | GCGC | 1 cut(s) | 11 |
| HinP1I | GCGC | 1 cut(s) | 11 |
| HinfI | GANTC | 1 cut(s) | 152 |
| HphI | GGTGA | 5 cut(s) | 102, 108, 156, 452, 520 |
| Hpy166II | GTNNAC | 2 cut(s) | 164, 233 |
| Hpy188I | TCNGA | 1 cut(s) | 646 |
| Hpy188III | TCNNGA | 1 cut(s) | 398 |
| Hpy8I | GTNNAC | 2 cut(s) | 164, 233 |
| HpyAV | CCTTC | 5 cut(s) | 427, 473, 542, 641, 693 |
| HpyCH4III | ACNGT | 2 cut(s) | 114, 366 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 220, 310 |
| HpyF3I | CTNAG | 2 cut(s) | 158, 346 |
| Hsp92II | CATG | 2 cut(s) | 258, 662 |
| HspAI | GCGC | 1 cut(s) | 11 |
| Ksp22I | TGATCA | 1 cut(s) | 655 |
| Kzo9I | GATC | 2 cut(s) | 655, 712 |
| LmnI | GCTCC | 2 cut(s) | 263, 588 |
| LpnPI | CCDG | 8 cut(s) | 33, 44, 138, 205, 320, 355, 405, 589 |
| Lsp1109I | GCAGC | 1 cut(s) | 619 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeI | CTAG | 1 cut(s) | 80 |
| MaeIII | GTNAC | 1 cut(s) | 114 |
| MalI | GATC | 2 cut(s) | 657, 714 |
| MboI | GATC | 2 cut(s) | 655, 712 |
| MboII | GAAGA | 4 cut(s) | 34, 79, 161, 422 |
| MluCI | AATT | 5 cut(s) | 37, 369, 428, 463, 677 |
| MmeI | TCCRAC | 2 cut(s) | 525, 533 |
| MseI | TTAA | 3 cut(s) | 143, 368, 558 |
| Mva1269I | GAATGC | 2 cut(s) | 31, 245 |
| MvnI | CGCG | 1 cut(s) | 13 |
| NdeII | GATC | 2 cut(s) | 655, 712 |
| NlaIII | CATG | 2 cut(s) | 258, 662 |
| NmuCI | GTSAC | 1 cut(s) | 114 |
| PctI | GAATGC | 2 cut(s) | 31, 245 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 524 |
| PkrI | GCNGC | 1 cut(s) | 634 |
| PspFI | CCCAGC | 1 cut(s) | 191 |
| PspPI | GGNCC | 2 cut(s) | 184, 515 |
| SaqAI | TTAA | 3 cut(s) | 143, 368, 558 |
| SatI | GCNGC | 1 cut(s) | 633 |
| Sau3AI | GATC | 2 cut(s) | 655, 712 |
| Sau96I | GGNCC | 2 cut(s) | 184, 515 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SinI | GGWCC | 1 cut(s) | 184 |
| SmlI | CTYRAG | 1 cut(s) | 240 |
| SmoI | CTYRAG | 1 cut(s) | 240 |
| Sse9I | AATT | 5 cut(s) | 37, 369, 428, 463, 677 |
| SspMI | CTAG | 1 cut(s) | 80 |
| TaaI | ACNGT | 2 cut(s) | 114, 366 |
| TasI | AATT | 5 cut(s) | 37, 369, 428, 463, 677 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 3 cut(s) | 143, 368, 558 |
| Tru9I | TTAA | 3 cut(s) | 143, 368, 558 |
| TscAI | CASTG | 4 cut(s) | 126, 222, 235, 340 |
| TseFI | GTSAC | 1 cut(s) | 114 |
| TseI | GCWGC | 1 cut(s) | 632 |
| Tsp45I | GTSAC | 1 cut(s) | 114 |
| TspDTI | ATGAA | 1 cut(s) | 507 |
| TspRI | CASTG | 4 cut(s) | 126, 222, 235, 340 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 524 |
| VpaK11BI | GGWCC | 1 cut(s) | 184 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 56 |
| XapI | RAATTY | 1 cut(s) | 677 |
| XspI | CTAG | 1 cut(s) | 80 |