Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012664

Physical Location & Seq

Genomic Coordinates Forward (+)

9580478 .. 9581295

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG104100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGAGATAGGCGACCCCTGCACTTCAATTTCTTCTCTTCTCTGAAGCAGGTTGAGAAGAGATTGAAACTAGAATACCCATCTGAACAATCGACTCCATCACAATCACCATTGGTAGCAAGGAACAAGTTATTAACAGAATCATTAAGCTCACCCATATACCTTGATTTGGATCCCTCCAACAACAACAACCATTACAGTTCTAGTACACTCCAAGACAGTAGTGAAGCCCCTGAAGTATTCCTCTCATGCTCTCCACAGTTTATACCAACCCAAGAGAACCCAACTCAGCCAAATGCCCTGAATGACCCGAAAACTATCAATGACACTGAAGGTGAAGCCATGGTCGATGATATTGAACAGTTGATTCAACTCTTGGGTTTGTCAAGTTGCCAGGAAGGAGATGAAGAAAAGGCTGGTTTGGAGTTGAAGTGTGGTGGTAGTGAAAATGGGGGTAATTCTTGTCATTGTGAAGGCGGGTTTTATGAGAAGATTGTTGGGGTGAAGGGGCCAAAGTGTGGGAGAGAAGTGGAGAGGTTGGAGGGTTGGATTAACTACTTTTTGAATGGTGATGGGGAGGGAAAGATTGAGCCTTTCAGGCTGGCACATTTGCTTTTGAGTAAAGCTGCTTTTGTTTCTGAGGGTGCTGATCATGGTTTTGGAGGCTTGGACTTCCCTTCAACGATTGGGGATTTTCTGCGCAACGATCCTCCAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.3

Weight (kDa)

4.61

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012664)

Species	Orthologous Gene IDs
malus_domestica	MD05G1289100.v1.1
prunus_persica	Prupe.4G076400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013271 RchiOBHm_Chr5g0013301
rosa_laevigata	RLG00000032003 RLG00000032006
rosa_multiflora	Rmu_sc0003458.1_g000010 Rmu_sc0004521.1_g000020
rosa_roxburghii	Rroxscaffold_1G00063240
rosa_rugosa	Rorug05G0008600 Rorug05G0008800
rosa_samantha	Rh5AG103300 Rh5AG104100 Rh5BG100100 Rh5CG111300 Rh5CG111700 Rh5DG098900
rosa_wichuraiana	Rw5G009020 Rw5G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	518
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	167, 180, 701
AcuI	CTGAAG	3 cut(s)	65, 255, 351
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	169, 518
AgsI	TTSAA	7 cut(s)	28, 67, 359, 371, 430, 565, 681
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	150, 626
AluI	AGCT	2 cut(s)	150, 626
AlwI	GGATC	3 cut(s)	167, 180, 701
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	5 cut(s)	99, 144, 347, 514, 581
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	3 cut(s)	88, 106, 566
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	649
BfaI	CTAG	2 cut(s)	71, 204
BfuAI	ACCTGC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	598
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	174, 510
BmrFI	CCNGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 518
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	169, 518
BseMII	CTCAG	2 cut(s)	302, 630
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	169, 518
BsnI	GGCC	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	172, 649, 706
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	2 cut(s)	301, 631
BspLI	GGNNCC	2 cut(s)	174, 510
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	167, 180, 701
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	172, 649, 706
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	4 cut(s)	200, 221, 261, 363
Bst6I	CTCTTC	2 cut(s)	43, 53
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	2 cut(s)	288, 639
BstDSI	CCRYGG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	3 cut(s)	175, 652, 709
BstMBI	GATC	3 cut(s)	172, 649, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 598
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	511
BtgI	CCRYGG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	603
CfoI	GCGC	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	3 cut(s)	249, 343, 653
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	288, 639
DpnI	GATC	3 cut(s)	174, 651, 708
DpnII	GATC	3 cut(s)	172, 649, 706
Eam1104I	CTCTTC	2 cut(s)	43, 53
EarI	CTCTTC	2 cut(s)	43, 53
Eco130I	CCWWGG	1 cut(s)	342
Eco57I	CTGAAG	3 cut(s)	65, 255, 351
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	252, 346, 656
FaiI	YATR	7 cut(s)	158, 160, 250, 266, 344, 486, 654
FatI	CATG	3 cut(s)	248, 342, 652
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	71, 204
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	702
Hin1II	CATG	3 cut(s)	252, 346, 656
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	94, 140, 367
HphI	GGTGA	5 cut(s)	99, 144, 347, 514, 581
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	45, 85, 640
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	326, 392, 467, 499, 687
HpyCH4III	ACNGT	4 cut(s)	200, 221, 261, 363
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 598
HpyF3I	CTNAG	2 cut(s)	288, 639
Hsp92II	CATG	3 cut(s)	252, 346, 656
HspAI	GCGC	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	172, 649, 706
LpnPI	CCDG	9 cut(s)	32, 35, 246, 314, 380, 402, 407, 583, 587
Lsp1109I	GCAGC	1 cut(s)	613
MaeI	CTAG	2 cut(s)	71, 204
MalI	GATC	3 cut(s)	174, 651, 708
MboI	GATC	3 cut(s)	172, 649, 706
MboII	GAAGA	5 cut(s)	25, 30, 70, 419, 502
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	2 cut(s)	28, 457
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	3 cut(s)	204, 519, 527
MnlI	CCTC	8 cut(s)	187, 254, 528, 535, 571, 634, 656, 720
MseI	TTAA	4 cut(s)	134, 146, 552, 721
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	19, 598
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	172, 649, 706
NlaIII	CATG	3 cut(s)	252, 346, 656
NlaIV	GGNNCC	2 cut(s)	174, 510
NsbI	TGCGCA	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	140, 367
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	174, 510
PspPI	GGNCC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	134, 146, 552, 721
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	3 cut(s)	172, 649, 706
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	6 cut(s)	54, 152, 165, 337, 539, 628
Sse9I	AATT	2 cut(s)	28, 457
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	71, 204
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	200, 221, 261, 363
TaqI	TCGA	2 cut(s)	92, 348
TasI	AATT	2 cut(s)	28, 457
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	140, 367
Tru1I	TTAA	4 cut(s)	134, 146, 552, 721
Tru9I	TTAA	4 cut(s)	134, 146, 552, 721
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	518
XspI	CTAG	2 cut(s)	71, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.