Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011536

Physical Location & Seq

Genomic Coordinates Forward (+)

44995644 .. 45001287

Gene Structure 5644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1322700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGCAGTTGTTGATTGGGTTGATGCTGATTCTCACTGTGCCAGCTTCGGTTGCACTGACTGACCCACAAGATGTTATCGCCATGAATAGTTTATTTGTAGCATTAGGCTGCCCGCCTCTTCCAGGGTGGCTTCTTGTTGGAGGAGACCCGTGTGGGGATAACTGGCAAGGTGTTGCCTGCGTCTTCTCAAGCATAACATCATTAAAGCTTAATGGAGCCAACTTGGGAGGACAGCTTGGTGATAGCTTGGCACTCTTCGGGTCCATCATAGAAATAGATTTTGGCAGTAACCATATTGGAGGGAGTATTCCAAAATCTTTTCCCCCGACTGTCAGGAACGTTTCACTATCCAATAATCAGTTCATTGGAAGCATCCCGGGCAGTTTGTCATCTTCAGCTCAGTTGTTGGAATTGTCGTTAGATAATAACCATCTCAGTGGAGAAATACCAGATGCCTTTCAACCGCTTACCGTTTTGAATAGATTGGATCTGTCTGGCAATAATTTAAGTGGTCAACTGTGCCCCTCACTGATGAATTTGTCATCTCTTTCCACATTGCACTTACAGAACAACAGCCTGGTTGGAACCCTTGATGTGTTACAAGATCTTCCCCTGCAGGATCTGAACATTGAAAACAATTTATTCTCTGGGCCAATACCTCCAAAGTTGCTTGGCATTCCGAATTTCAGAAAAGATGGAAATCCTTTCAATACTACTATTATCCCATCAGCTCTACCGCCAGCACCTTCATTCGTAGCCGGGGCACCTACTTCTTATGAACATCCTTGGCAACAGGCTAATGGACCTTCTTCGCCAGCAATGCTAAGTACTGCAAGAACTAGGAATTTTTTTACCGCTAAGACAGTGACTTGGATTGCTGTTGGGGGGATTCTAGTAGTTATTGTACTAGTTTTTTGCCTTCTAGTGAGATGTTTCAAAGGGAGGAGACAGAGCAAGGAAGAAAAGAAGCATGGGATTAGTACATATAAGATCCCTAGAGTGAATAAGAAATACAGTGAATCGCCACTTCAGGAAGGTGTTCAAATGGAGAAAGTCCCAAAAGAGGCAGTTATGAAACCACTGGATAACTATGGAGTGGACAGCAACAGAGTGGTTGTAATTCCAAAGCCACAAAAAGAAACAAAGACAGAGACAAAAAGTTTTGCAGAAAGTTCGATGTATAAGAAGGATCATTCAATTGACATGACAGACGATGATGAATTTTTGCCCCGACCACCCCCTCCCCCATTTTTCCTTGCCAACAACGGTACCTCAAATTCAGTTGGGCCTGCTAGAGTAACTACAAGCAGGCATCCATTGAAGTCTCCAGACCTAAGCTCTGTACAAGTGTTTACCGTTGGATCACTTCAGCAGTATACCAATAGCTTCTCTGAAGAAAATTTTATTGGAGCAGGCATGCTTGGCAGTGTTTATAGGGCTGCGCTTCCTGACCAAAAGATTTTGGCGGTCAAGAAACTGGACAGTACAGCATGTACGCAGCTGAGTGATGAGGAATTTCTTGATTTAGTATCTAATATCTCTAAGGCAAAACATGCTAATATTGTGAAACTAGTGGGTTACTCTGCTGAGCATGGCCAACGACTACTTGTGTATGAGTATTGTACAAATGGGACTCTCCATGATGCACTGCATACTGATGATGAAATTCATCACAAGCTCACATGGAGTGTGCGCATCCGCGTTGCACTTGGAGCTGCAAGAGCTCTCGAGTGTTTGCATGAGGCCTGTCAACCACCTGTTGTGCACCATAATTTCAAGTCTGCCAATCTTCTCCTTGATGAAGAGCTTGAAGTACATGTCTCGGACTGCGGTTTAGCTCCTCTGATATTGTCTCCCTCAATGTCCGGGCACCTCCTCACTGCGTATGGTTCTGCTGCCCCGGAATTTGACTCAGGAAGTTATACTCACCAAAGTGATGTCTACAGCTTTGGGGTTGTAATGTTAGAGCTCCTTACAGGGAGGAAGGCCTATGACAGGTCACGGCCTCGTGGGGAACAATATTTGGTTAGATGGGCAGTTCCAAAGCTTCATGACATTGATGCATTATCAAGGATGGTTGATCCCTCTCTAAATGGAGCATATACAATGAAGTCTTTATCCCGTTTTGCCGATATCATTTCCTCTTGCGTACAGAGGGAGCCAGAATTCCGGCCTCGAATATCTGAAATTGTCCAGGAACTCCTGCAAATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

739

Amino Acids

80.38

Weight (kDa)

6.07

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	109 - 169	1.9e-07	Leucine rich repeat
Pkinase	PF00069	464 - 733	1.9e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	467 - 734	5.2e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04500 FvH4_3g04500 FvH4_3g04500
malus_domestica	MD05G1322700.v1.1 MD10G1300600.v1.1
prunus_persica	Prupe.4G039900_v2.0.a1 Prupe.4G039900_v2.0.a1 Prupe.4G039900_v2.0.a1
pyrus_communis	pycom05g29700 pycom10g25350
rosa_chinensis	RchiOBHm_Chr5g0007431
rosa_laevigata	RLG00000031456
rosa_multiflora	Rmu_sc0003826.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069040
rosa_rugosa	Rorug04G0426800
rosa_samantha	Rh5AG055200 Rh5BG052800 Rh5CG062600 Rh5DG051800
rosa_wichuraiana	Rw5G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1694
Acc65I	GGTACC	1 cut(s)	1268
AccB1I	GGYRCC	3 cut(s)	763, 1268, 1869
AccI	GTMKAC	2 cut(s)	1376, 1941
AccII	CGCG	1 cut(s)	1701
AciI	CCGC	7 cut(s)	113, 464, 737, 855, 1466, 1699, 1830
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	6 cut(s)	495, 627, 985, 1197, 1369, 2075
AcoI	YGGCCR	1 cut(s)	1594
AcuI	CTGAAG	4 cut(s)	378, 1013, 1352, 1413
AfiI	CCNNNNNNNGG	5 cut(s)	122, 154, 1063, 1995, 2209
AflIII	ACRYGT	1 cut(s)	1816
AhlI	ACTAGT	2 cut(s)	907, 1570
AjnI	CCWGG	3 cut(s)	121, 576, 2193
AjuI	GAANNNNNNNTTGG	6 cut(s)	264, 296, 344, 376, 1389, 1421
AleI	CACNNNNGTG	1 cut(s)	1932
Alw21I	GWGCWC	3 cut(s)	1726, 1767, 1971
Alw26I	GTCTC	6 cut(s)	138, 940, 1145, 1329, 1825, 1857
Alw44I	GTGCAC	1 cut(s)	1763
AlwI	GGATC	6 cut(s)	495, 627, 985, 1197, 1369, 2075
AlwNI	CAGNNNCTG	1 cut(s)	622
Ama87I	CYCGRG	2 cut(s)	376, 1727
AoxI	GGCC	7 cut(s)	650, 1286, 1594, 1743, 1986, 2003, 2171
ApaLI	GTGCAC	1 cut(s)	1763
ApeKI	GCWGC	5 cut(s)	108, 1439, 1498, 1715, 1895
Asp700I	GAANNNNTTC	1 cut(s)	1038
Asp718I	GGTACC	1 cut(s)	1268
AspLEI	GCGC	2 cut(s)	1444, 1695
AspS9I	GGNCC	4 cut(s)	261, 650, 803, 1286
AsuC2I	CCSGG	5 cut(s)	377, 378, 760, 1867, 1901
AsuHPI	GGTGA	2 cut(s)	251, 1919
AvaI	CYCGRG	2 cut(s)	376, 1727
AvaII	GGWCC	2 cut(s)	261, 803
BaeGI	GKGCMC	4 cut(s)	524, 766, 1767, 1872
BaeI	ACNNNNGTAYC	2 cut(s)	1252, 1285
BalI	TGGCCA	1 cut(s)	1596
BanI	GGYRCC	3 cut(s)	763, 1268, 1869
BanII	GRGCYC	2 cut(s)	1726, 1971
BauI	CACGAG	1 cut(s)	2007
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	3 cut(s)	1726, 1767, 1971
BbvI	GCAGC	5 cut(s)	95, 1426, 1510, 1702, 1882
BccI	CCATC	6 cut(s)	272, 438, 689, 733, 2025, 2068
BceAI	ACGGC	1 cut(s)	2018
BcgI	CGANNNNNNTGC	2 cut(s)	1155, 1189
BciT130I	CCWGG	3 cut(s)	123, 578, 2195
BcnI	CCSGG	5 cut(s)	377, 378, 760, 1867, 1901
BcoDI	GTCTC	6 cut(s)	138, 940, 1145, 1329, 1825, 1857
BcuI	ACTAGT	2 cut(s)	907, 1570
BfaI	CTAG	7 cut(s)	840, 893, 908, 923, 996, 1293, 1571
BfmI	CTRYAG	2 cut(s)	614, 1942
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	5 cut(s)	109, 1440, 1499, 1716, 1896
BlpI	GCTNAGC	1 cut(s)	1587
BlsI	GCNGC	5 cut(s)	110, 1441, 1500, 1717, 1897
BmcAI	AGTACT	1 cut(s)	829
Bme1390I	CCNGG	8 cut(s)	123, 377, 378, 578, 760, 1867, 1901, 2195
Bme18I	GGWCC	2 cut(s)	261, 803
BmeT110I	CYCGRG	2 cut(s)	376, 1727
BmgT120I	GGNCC	4 cut(s)	261, 650, 803, 1286
BmiI	GGNNCC	7 cut(s)	217, 262, 586, 765, 1270, 1871, 2160
BmrFI	CCNGG	8 cut(s)	123, 377, 378, 578, 760, 1867, 1901, 2195
BmsI	GCATC	7 cut(s)	12, 381, 442, 1321, 1633, 1704, 2050
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	1311
Bpu10I	CCTNAGC	1 cut(s)	1334
Bpu1102I	GCTNAGC	1 cut(s)	1587
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	5 cut(s)	377, 378, 760, 1867, 1901
BsaBI	GATNNNNATC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	5 cut(s)	122, 376, 759, 785, 1899
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 154, 1063, 1995, 2209
Bse1I	ACTGG	3 cut(s)	167, 1086, 1482
Bse3DI	GCAATG	2 cut(s)	554, 825
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	3 cut(s)	123, 578, 2195
BseDI	CCNNGG	5 cut(s)	122, 376, 759, 785, 1899
BseGI	GGATG	5 cut(s)	372, 781, 1312, 1695, 2079
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	5 cut(s)	122, 154, 1063, 1995, 2209
BseMI	GCAATG	2 cut(s)	554, 825
BseMII	CTCAG	5 cut(s)	413, 448, 1493, 1578, 1926
BseNI	ACTGG	3 cut(s)	167, 1086, 1482
BseRI	GAGGAG	4 cut(s)	156, 958, 1830, 1865
BseSI	GKGCMC	4 cut(s)	524, 766, 1767, 1872
BseXI	GCAGC	5 cut(s)	95, 1426, 1510, 1702, 1882
Bsh1236I	CGCG	1 cut(s)	1701
BshFI	GGCC	7 cut(s)	652, 1288, 1596, 1745, 1988, 2005, 2173
BshNI	GGYRCC	3 cut(s)	763, 1268, 1869
BsiHKAI	GWGCWC	3 cut(s)	1726, 1767, 1971
BsiHKCI	CYCGRG	2 cut(s)	376, 1727
BsiSI	CCGG	5 cut(s)	377, 759, 1866, 1901, 2170
BslFI	GGGAC	2 cut(s)	1040, 1645
BslI	CCNNNNNNNGG	5 cut(s)	122, 154, 1063, 1995, 2209
BsmAI	GTCTC	6 cut(s)	138, 940, 1145, 1329, 1825, 1857
BsmFI	GGGAC	2 cut(s)	1040, 1645
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	7 cut(s)	652, 1288, 1596, 1745, 1988, 2005, 2173
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	2 cut(s)	376, 1727
Bsp1286I	GDGCHC	6 cut(s)	524, 766, 1726, 1767, 1872, 1971
Bsp1407I	TGTACA	2 cut(s)	1342, 1622
Bsp143I	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
Bsp1720I	GCTNAGC	1 cut(s)	1587
BspACI	CCGC	7 cut(s)	113, 464, 737, 855, 1466, 1699, 1830
BspANI	GGCC	7 cut(s)	652, 1288, 1596, 1745, 1988, 2005, 2173
BspCNI	CTCAG	5 cut(s)	412, 447, 1494, 1579, 1925
BspFNI	CGCG	1 cut(s)	1701
BspHI	TCATGA	1 cut(s)	2050
BspLI	GGNNCC	7 cut(s)	217, 262, 586, 765, 1270, 1871, 2160
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	6 cut(s)	495, 627, 985, 1197, 1369, 2075
BspQI	GCTCTTC	1 cut(s)	1797
BspT107I	GGYRCC	3 cut(s)	763, 1268, 1869
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	554, 825
BsrGI	TGTACA	2 cut(s)	1342, 1622
BsrI	ACTGG	3 cut(s)	167, 1086, 1482
BssECI	CCNNGG	5 cut(s)	122, 376, 759, 785, 1899
BssMI	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
BssNAI	GTATAC	1 cut(s)	1377
BssSI	CACGAG	1 cut(s)	2007
BssT1I	CCWWGG	1 cut(s)	785
Bst1107I	GTATAC	1 cut(s)	1377
Bst2BI	CACGAG	1 cut(s)	2007
Bst2UI	CCWGG	3 cut(s)	123, 578, 2195
Bst4CI	ACNGT	9 cut(s)	37, 331, 472, 519, 865, 1016, 1268, 1357, 1484
Bst6I	CTCTTC	3 cut(s)	123, 260, 1797
BstAPI	GCANNNNNTGC	1 cut(s)	1553
BstAUI	TGTACA	2 cut(s)	1342, 1622
BstC8I	GCNNGC	9 cut(s)	42, 113, 178, 741, 816, 1290, 1310, 1414, 1418
BstDEI	CTNAG	9 cut(s)	399, 434, 824, 858, 1334, 1502, 1542, 1587, 1912
BstENI	CCTNNNNNAGG	2 cut(s)	120, 1993
BstF5I	GGATG	5 cut(s)	372, 781, 1312, 1695, 2079
BstFNI	CGCG	1 cut(s)	1701
BstHHI	GCGC	2 cut(s)	1444, 1695
BstKTI	GATC	7 cut(s)	490, 607, 622, 993, 1192, 1364, 2083
BstMAI	GTCTC	6 cut(s)	138, 940, 1145, 1329, 1825, 1857
BstMBI	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 378, 820, 1422, 1553, 1712, 1721
BstNI	CCWGG	3 cut(s)	123, 578, 2195
BstNSI	RCATGY	4 cut(s)	1420, 1494, 1556, 1820
BstSCI	CCNGG	8 cut(s)	121, 375, 376, 576, 758, 1865, 1899, 2193
BstSFI	CTRYAG	2 cut(s)	614, 1942
BstSLI	GKGCMC	4 cut(s)	524, 766, 1767, 1872
BstUI	CGCG	1 cut(s)	1701
BstV1I	GCAGC	5 cut(s)	95, 1426, 1510, 1702, 1882
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	4 cut(s)	487, 604, 619, 990
BstXI	CCANNNNNNTGG	1 cut(s)	437
BstYI	RGATCY	4 cut(s)	487, 604, 619, 990
BstZ17I	GTATAC	1 cut(s)	1377
BsuRI	GGCC	7 cut(s)	652, 1288, 1596, 1745, 1988, 2005, 2173
BtsCI	GGATG	5 cut(s)	372, 781, 1312, 1695, 2079
BtsI	GCAGTG	3 cut(s)	1432, 1646, 1878
Cac8I	GCNNGC	9 cut(s)	42, 113, 178, 741, 816, 1290, 1310, 1414, 1418
CaiI	CAGNNNCTG	1 cut(s)	622
CciI	TCATGA	1 cut(s)	2050
CfoI	GCGC	2 cut(s)	1444, 1695
Cfr13I	GGNCC	4 cut(s)	261, 650, 803, 1286
Cfr9I	CCCGGG	1 cut(s)	376
CseI	GACGC	1 cut(s)	169
DdeI	CTNAG	9 cut(s)	399, 434, 824, 858, 1334, 1502, 1542, 1587, 1912
DpnI	GATC	7 cut(s)	489, 606, 621, 992, 1191, 1363, 2082
DpnII	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
EaeI	YGGCCR	1 cut(s)	1594
Eam1104I	CTCTTC	3 cut(s)	123, 260, 1797
EarI	CTCTTC	3 cut(s)	123, 260, 1797
Ecl136II	GAGCTC	2 cut(s)	1724, 1969
Eco130I	CCWWGG	1 cut(s)	785
Eco147I	AGGCCT	2 cut(s)	1745, 1988
Eco24I	GRGCYC	2 cut(s)	1726, 1971
Eco31I	GGTCTC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	2134
Eco47I	GGWCC	2 cut(s)	261, 803
Eco53kI	GAGCTC	2 cut(s)	1724, 1969
Eco57I	CTGAAG	4 cut(s)	378, 1013, 1352, 1413
Eco88I	CYCGRG	2 cut(s)	376, 1727
EcoICRI	GAGCTC	2 cut(s)	1724, 1969
EcoNI	CCTNNNNNAGG	2 cut(s)	120, 1993
EcoRI	GAATTC	1 cut(s)	2165
EcoRII	CCWGG	3 cut(s)	121, 576, 2193
EcoRV	GATATC	1 cut(s)	2134
EcoT14I	CCWWGG	1 cut(s)	785
EcoT22I	ATGCAT	1 cut(s)	2065
EcoT38I	GRGCYC	2 cut(s)	1726, 1971
ErhI	CCWWGG	1 cut(s)	785
FaqI	GGGAC	2 cut(s)	1040, 1645
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	1376, 1941
Fnu4HI	GCNGC	5 cut(s)	109, 1440, 1499, 1716, 1896
FokI	GGATG	5 cut(s)	359, 768, 1299, 1682, 2086
FriOI	GRGCYC	2 cut(s)	1726, 1971
Fsp4HI	GCNGC	5 cut(s)	109, 1440, 1499, 1716, 1896
FspAI	RTGCGCAY	1 cut(s)	1694
FspBI	CTAG	7 cut(s)	840, 893, 908, 923, 996, 1293, 1571
FspI	TGCGCA	1 cut(s)	1694
GlaI	GCGC	2 cut(s)	1443, 1694
GluI	GCNGC	5 cut(s)	109, 1440, 1499, 1716, 1896
GsuI	CTGGAG	1 cut(s)	1311
HaeIII	GGCC	7 cut(s)	652, 1288, 1596, 1745, 1988, 2005, 2173
HapII	CCGG	5 cut(s)	377, 759, 1866, 1901, 2170
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	1444, 1695
Hin6I	GCGC	2 cut(s)	1442, 1693
HinP1I	GCGC	2 cut(s)	1442, 1693
HincII	GTYRAC	2 cut(s)	515, 1751
HindII	GTYRAC	2 cut(s)	515, 1751
HindIII	AAGCTT	2 cut(s)	206, 2045
HinfI	GANTC	5 cut(s)	28, 889, 1019, 1633, 1910
HpaII	CCGG	5 cut(s)	377, 759, 1866, 1901, 2170
HphI	GGTGA	2 cut(s)	251, 1919
Hpy166II	GTNNAC	7 cut(s)	515, 1099, 1353, 1377, 1751, 1765, 1942
Hpy188I	TCNGA	7 cut(s)	624, 681, 689, 1393, 1825, 1845, 2185
Hpy188III	TCNNGA	9 cut(s)	334, 1031, 1328, 1448, 1471, 1520, 1727, 1914, 2051
Hpy8I	GTNNAC	7 cut(s)	515, 1099, 1353, 1377, 1751, 1765, 1942
HpyAV	CCTTC	6 cut(s)	756, 816, 929, 1028, 1180, 1978
HpyCH4III	ACNGT	9 cut(s)	37, 331, 472, 519, 865, 1016, 1268, 1357, 1484
HpyCH4IV	ACGT	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 378, 820, 1422, 1553, 1712, 1721
HpyF3I	CTNAG	9 cut(s)	399, 434, 824, 858, 1334, 1502, 1542, 1587, 1912
HpySE526I	ACGT	1 cut(s)	339
HspAI	GCGC	2 cut(s)	1442, 1693
KpnI	GGTACC	1 cut(s)	1272
Kzo9I	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
LguI	GCTCTTC	1 cut(s)	1797
LmnI	GCTCC	7 cut(s)	215, 1409, 1712, 1843, 1974, 2096, 2158
Lsp1109I	GCAGC	5 cut(s)	95, 1426, 1510, 1702, 1882
LweI	GCATC	7 cut(s)	12, 381, 442, 1321, 1633, 1704, 2050
MaeI	CTAG	7 cut(s)	840, 893, 908, 923, 996, 1293, 1571
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	6 cut(s)	287, 597, 865, 1297, 1577, 1998
MalI	GATC	7 cut(s)	489, 606, 621, 992, 1191, 1363, 2082
MboI	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
MfeI	CAATTG	1 cut(s)	1197
MflI	RGATCY	4 cut(s)	487, 604, 619, 990
MhlI	GDGCHC	6 cut(s)	524, 766, 1726, 1767, 1872, 1971
MlsI	TGGCCA	1 cut(s)	1596
MluNI	TGGCCA	1 cut(s)	1596
MlyI	GAGTC	2 cut(s)	1627, 1904
MmeI	TCCRAC	4 cut(s)	118, 387, 562, 1339
Mox20I	TGGCCA	1 cut(s)	1596
Mph1103I	ATGCAT	1 cut(s)	2065
MroXI	GAANNNNTTC	1 cut(s)	1038
MscI	TGGCCA	1 cut(s)	1596
MseI	TTAA	4 cut(s)	203, 210, 506, 2215
MslI	CAYNNNNRTG	3 cut(s)	435, 1656, 1932
Msp20I	TGGCCA	1 cut(s)	1596
MspA1I	CMGCKG	1 cut(s)	1501
MspI	CCGG	5 cut(s)	377, 759, 1866, 1901, 2170
MspR9I	CCNGG	8 cut(s)	123, 377, 378, 578, 760, 1867, 1901, 2195
MunI	CAATTG	1 cut(s)	1197
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	3 cut(s)	123, 578, 2195
MvnI	CGCG	1 cut(s)	1701
MwoI	GCNNNNNNNGC	7 cut(s)	50, 378, 820, 1422, 1553, 1712, 1721
NciI	CCSGG	5 cut(s)	377, 378, 760, 1867, 1901
NdeII	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
NlaIV	GGNNCC	7 cut(s)	217, 262, 586, 765, 1270, 1871, 2160
NmuCI	GTSAC	2 cut(s)	865, 1998
NsbI	TGCGCA	1 cut(s)	1694
NsiI	ATGCAT	1 cut(s)	2065
NspI	RCATGY	4 cut(s)	1420, 1494, 1556, 1820
OliI	CACNNNNGTG	1 cut(s)	1932
PaeI	GCATGC	1 cut(s)	1420
PaeR7I	CTCGAG	1 cut(s)	1727
PagI	TCATGA	1 cut(s)	2050
PceI	AGGCCT	2 cut(s)	1745, 1988
PciI	ACATGT	1 cut(s)	1816
PciSI	GCTCTTC	1 cut(s)	1797
PctI	GAATGC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	1038
PfeI	GAWTC	3 cut(s)	28, 889, 1019
PfoI	TCCNGGA	1 cut(s)	2193
PkrI	GCNGC	5 cut(s)	110, 1441, 1500, 1717, 1897
PleI	GAGTC	2 cut(s)	1627, 1904
PpsI	GAGTC	2 cut(s)	1627, 1904
PscI	ACATGT	1 cut(s)	1816
Psp124BI	GAGCTC	2 cut(s)	1726, 1971
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	121, 576, 2193
PspGI	CCWGG	3 cut(s)	121, 576, 2193
PspN4I	GGNNCC	7 cut(s)	217, 262, 586, 765, 1270, 1871, 2160
PspPI	GGNCC	4 cut(s)	261, 650, 803, 1286
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	622
PsuI	RGATCY	4 cut(s)	487, 604, 619, 990
PvuII	CAGCTG	1 cut(s)	1501
RseI	CAYNNNNRTG	3 cut(s)	435, 1656, 1932
SacI	GAGCTC	2 cut(s)	1726, 1971
SapI	GCTCTTC	1 cut(s)	1797
SaqAI	TTAA	4 cut(s)	203, 210, 506, 2215
SatI	GCNGC	5 cut(s)	109, 1440, 1499, 1716, 1896
Sau3AI	GATC	7 cut(s)	487, 604, 619, 990, 1189, 1361, 2080
Sau96I	GGNCC	4 cut(s)	261, 650, 803, 1286
SbfI	CCTGCAGG	1 cut(s)	618
ScaI	AGTACT	1 cut(s)	829
SchI	GAGTC	2 cut(s)	1627, 1904
ScrFI	CCNGG	8 cut(s)	123, 377, 378, 578, 760, 1867, 1901, 2195
SdaI	CCTGCAGG	1 cut(s)	618
SduI	GDGCHC	6 cut(s)	524, 766, 1726, 1767, 1872, 1971
SfaNI	GCATC	7 cut(s)	12, 381, 442, 1321, 1633, 1704, 2050
SfcI	CTRYAG	2 cut(s)	614, 1942
Sfr274I	CTCGAG	1 cut(s)	1727
SinI	GGWCC	2 cut(s)	261, 803
SlaI	CTCGAG	1 cut(s)	1727
SmaI	CCCGGG	1 cut(s)	378
SmiMI	CAYNNNNRTG	3 cut(s)	435, 1656, 1932
SmlI	CTYRAG	2 cut(s)	187, 1727
SmoI	CTYRAG	2 cut(s)	187, 1727
SpeI	ACTAGT	2 cut(s)	907, 1570
SphI	GCATGC	1 cut(s)	1420
Sse8387I	CCTGCAGG	1 cut(s)	618
SseBI	AGGCCT	2 cut(s)	1745, 1988
SsiI	CCGC	7 cut(s)	113, 464, 737, 855, 1466, 1699, 1830
SspI	AATATT	2 cut(s)	1561, 2021
SspMI	CTAG	7 cut(s)	840, 893, 908, 923, 996, 1293, 1571
SstI	GAGCTC	2 cut(s)	1726, 1971
StuI	AGGCCT	2 cut(s)	1745, 1988
StyD4I	CCNGG	8 cut(s)	121, 375, 376, 576, 758, 1865, 1899, 2193
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	9 cut(s)	37, 331, 472, 519, 865, 1016, 1268, 1357, 1484
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	1175, 1728, 2176
TatI	WGTACW	7 cut(s)	827, 904, 980, 1342, 1484, 1622, 1813
TfiI	GAWTC	3 cut(s)	28, 889, 1019
Tru1I	TTAA	4 cut(s)	203, 210, 506, 2215
Tru9I	TTAA	4 cut(s)	203, 210, 506, 2215
TseFI	GTSAC	2 cut(s)	865, 1998
TseI	GCWGC	5 cut(s)	108, 1439, 1498, 1715, 1895
Tsp45I	GTSAC	2 cut(s)	865, 1998
TspMI	CCCGGG	1 cut(s)	376
VneI	GTGCAC	1 cut(s)	1763
VpaK11BI	GGWCC	2 cut(s)	261, 803
XagI	CCTNNNNNAGG	2 cut(s)	120, 1993
XceI	RCATGY	4 cut(s)	1420, 1494, 1556, 1820
XhoI	CTCGAG	1 cut(s)	1727
XmaI	CCCGGG	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	1376, 1941
XmnI	GAANNNNTTC	1 cut(s)	1038
XspI	CTAG	7 cut(s)	840, 893, 908, 923, 996, 1293, 1571
ZrmI	AGTACT	1 cut(s)	829
Zsp2I	ATGCAT	1 cut(s)	2065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.