Rorug04G0426800

Protein STRUBBELIG-RECEPTOR FAMILY 3-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
58558258 .. 58560235
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0426800.1

Sequence Viewer

Length: 1089 bp
ATGGCGGCAAATGGTACCTTGATCGGCGAACAGGGTTATGATCGAGCCGAAGAAGTGAAGCAATTCGACGACTCCAAGCTCGGAGTCAAAGGCCTCGTCGACTCGGGTCTCTCCTCCATTCCCCGAATCTTCATCCACCCACCCGAAACCTTACAGCAATTGCAGCCCACGACCCGACCCCACGCCCAATCAATCCCCACCATAGACCTCTCCGATCGCCGCTCCGCCATCGTTGACCAAGTCGGCGGCGCGTGCCGCAACTTCGGTTTCTTCCAGATCACCAACCACGGCATACCGACGGTGGTTCTGGACCGTACGATCGCCGCCGTCAAGGCCTTCCACGAGCAGCCGACGGAGGTCAAGGCGCGGTTCTACCGTAGAGAGATGGGCCAGGGCGTATCGTATCTCTCCAACGTTGACCTGTACACCTCCAAAGCCGCCAGCTGGCGCGACACGCTTCAGGTGAAGCTCGGCCCTGTTCCGGCGTCCGACGACGACGTTCCGGAGATTTGTAGGGATGAAATTGTGACGTGGAACAAGGAGATCCAACGGCTGGGAGAGGAGCTGCTGGGGCTGGTGAGTGAAGGGCTGGGATTGCGCGCGGAGAAGCTGAAGGAGATGACGTGTCTGGAAGGGAGGGTGATGGCGGCCCACTACTACCCGCCGTGCCCGCAGCCTGATCTAACGGTTGGGCTTACGTCACACAGTGACCCTGGAGTGTTGACCTTAGTGCTTCAAGATCATATTGGTGGGTTGCAGGTTAAGCACGATGAGGCTTGGGTGGATGTGAAACCTGTCCCCGGTGCTCTTGTGATCAACGTTGGTGATTTACTCCAGATTATTTCAAACGAGGAATACAAAAGCGTGGATCACCGGGTGTTGGCAAATCCAAGCCATGAGCCGCGTGTCTCGATCGCCGTGTTTCTGAACCCGAGCAATAGAGAGGGCGTGTTTGGTCCGTTGCCGGAGCTGGTCTCGCCGGAGAAGCCAGCTCTCTACAAAGAGTTCAAGTTTTCGGAATTCATGACGAGGTTCTTCACGAAAGGATTGGATGGCAAAACTTTGGTGAATTACTATAAGCTGCAGTGA

Protein Analysis

362

Amino Acids

40.15

Weight (kDa)

5.63

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 65 - 157 8.6e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 214 - 311 4.4e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 748
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 553
AccBSI CCGCTC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 99
AccII CGCG 6 cut(s) 251, 367, 450, 600, 602, 904
AccIII TCCGGA 1 cut(s) 502
AclI AACGTT 2 cut(s) 414, 819
AclWI GGATC 2 cut(s) 538, 876
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 2 cut(s) 443, 632
AcyI GRCGYC 1 cut(s) 485
AdeI CACNNNGTG 2 cut(s) 707, 877
AfaI GTAC 3 cut(s) 16, 316, 425
AfiI CCNNNNNNNGG 5 cut(s) 444, 481, 553, 800, 880
AflIII ACRYGT 1 cut(s) 623
AgsI TTSAA 3 cut(s) 737, 846, 1009
AjiI CACGTC 2 cut(s) 531, 624
AjnI CCWGG 2 cut(s) 390, 712
AluBI AGCT 8 cut(s) 79, 444, 469, 565, 610, 970, 992, 1081
AluI AGCT 8 cut(s) 79, 444, 469, 565, 610, 970, 992, 1081
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 3 cut(s) 113, 913, 979
AlwI GGATC 2 cut(s) 538, 876
Ama87I CYCGRG 2 cut(s) 103, 931
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 5 cut(s) 91, 333, 388, 472, 648
ApeKI GCWGC 5 cut(s) 163, 346, 565, 673, 1081
ApoI RAATTY 1 cut(s) 1019
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 5 cut(s) 251, 367, 450, 600, 602
AspS9I GGNCC 5 cut(s) 310, 388, 473, 649, 956
AsuC2I CCSGG 2 cut(s) 801, 875
AsuHPI GGTGA 7 cut(s) 271, 475, 589, 652, 836, 863, 1078
AvaI CYCGRG 2 cut(s) 103, 931
AvaII GGWCC 2 cut(s) 310, 956
BaeGI GKGCMC 1 cut(s) 671
BanI GGYRCC 1 cut(s) 14
BauI CACGAG 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 5 cut(s) 175, 358, 552, 685, 1068
BccI CCATC 4 cut(s) 236, 379, 637, 1046
BceAI ACGGC 5 cut(s) 304, 311, 566, 649, 902
BciT130I CCWGG 2 cut(s) 392, 714
BclI TGATCA 1 cut(s) 813
BcnI CCSGG 2 cut(s) 801, 875
BcoDI GTCTC 3 cut(s) 113, 913, 979
BfmI CTRYAG 1 cut(s) 1082
BfuAI ACCTGC 1 cut(s) 748
BglI GCCNNNNNGGC 1 cut(s) 332
Bme1390I CCNGG 4 cut(s) 392, 714, 801, 875
Bme18I GGWCC 2 cut(s) 310, 956
BmeT110I CYCGRG 2 cut(s) 103, 931
BmgBI CACGTC 2 cut(s) 531, 624
BmgT120I GGNCC 5 cut(s) 310, 388, 473, 649, 956
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 4 cut(s) 392, 714, 801, 875
BoxI GACNNNNGTC 2 cut(s) 105, 356
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 2 cut(s) 735, 818
BpuMI CCSGG 2 cut(s) 801, 875
BsaHI GRCGYC 1 cut(s) 485
BsaI GGTCTC 2 cut(s) 113, 979
BsaJI CCNNGG 4 cut(s) 286, 391, 712, 799
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 5 cut(s) 444, 481, 553, 800, 880
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 2 cut(s) 392, 714
BseDI CCNNGG 4 cut(s) 286, 391, 712, 799
BseGI GGATG 4 cut(s) 132, 523, 790, 1057
BseLI CCNNNNNNNGG 5 cut(s) 444, 481, 553, 800, 880
BsePI GCGCGC 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 103, 575
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 5 cut(s) 175, 358, 552, 685, 1068
BseYI CCCAGC 3 cut(s) 553, 568, 589
Bsh1236I CGCG 6 cut(s) 251, 367, 450, 600, 602, 904
Bsh1285I CGRYCG 3 cut(s) 217, 321, 915
BshFI GGCC 5 cut(s) 93, 335, 390, 474, 650
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 3 cut(s) 217, 321, 915
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 2 cut(s) 103, 931
BsiSI CCGG 6 cut(s) 482, 503, 801, 874, 965, 980
BsiWI CGTACG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 5 cut(s) 444, 481, 553, 800, 880
BsmAI GTCTC 3 cut(s) 113, 913, 979
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 5 cut(s) 93, 335, 390, 474, 650
Bso31I GGTCTC 2 cut(s) 113, 979
BsoBI CYCGRG 2 cut(s) 103, 931
Bsp1286I GDGCHC 2 cut(s) 671, 808
Bsp13I TCCGGA 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 423
BspANI GGCC 5 cut(s) 93, 335, 390, 474, 650
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 6 cut(s) 251, 367, 450, 600, 602, 904
BspHI TCATGA 1 cut(s) 1023
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 1086
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 2 cut(s) 538, 876
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 2 cut(s) 113, 979
BsrBI CCGCTC 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 423
BssECI CCNNGG 4 cut(s) 286, 391, 712, 799
BssHII GCGCGC 1 cut(s) 598
BssNI GRCGYC 1 cut(s) 485
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 392, 714
Bst4CI ACNGT 5 cut(s) 301, 314, 377, 688, 707
BstACI GRCGYC 1 cut(s) 485
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 6 cut(s) 253, 442, 446, 600, 671, 990
BstDEI CTNAG 1 cut(s) 727
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 4 cut(s) 132, 523, 790, 1057
BstFNI CGCG 6 cut(s) 251, 367, 450, 600, 602, 904
BstHHI GCGC 5 cut(s) 251, 367, 450, 600, 602
BstMAI GTCTC 3 cut(s) 113, 913, 979
BstMCI CGRYCG 3 cut(s) 217, 321, 915
BstNI CCWGG 2 cut(s) 392, 714
BstPAI GACNNNNGTC 2 cut(s) 105, 356
BstSCI CCNGG 4 cut(s) 390, 712, 799, 873
BstSFI CTRYAG 1 cut(s) 1082
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 6 cut(s) 251, 367, 450, 600, 602, 904
BstV1I GCAGC 5 cut(s) 175, 358, 552, 685, 1068
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BsuRI GGCC 5 cut(s) 93, 335, 390, 474, 650
BtgI CCRYGG 1 cut(s) 286
BtrI CACGTC 2 cut(s) 531, 624
BtsCI GGATG 4 cut(s) 132, 523, 790, 1057
BtsIMutI CAGTG 1 cut(s) 712
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 6 cut(s) 253, 442, 446, 600, 671, 990
CciI TCATGA 1 cut(s) 1023
CfoI GCGC 5 cut(s) 251, 367, 450, 600, 602
Cfr13I GGNCC 5 cut(s) 310, 388, 473, 649, 956
CseI GACGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 15, 315, 424
CviAII CATG 2 cut(s) 896, 1024
CviQI GTAC 3 cut(s) 15, 315, 424
DdeI CTNAG 1 cut(s) 727
DraIII CACNNNGTG 2 cut(s) 707, 877
EciI GGCGGA 1 cut(s) 214
Eco147I AGGCCT 2 cut(s) 93, 335
Eco31I GGTCTC 2 cut(s) 113, 979
Eco47I GGWCC 2 cut(s) 310, 956
Eco57I CTGAAG 2 cut(s) 443, 632
Eco88I CYCGRG 2 cut(s) 103, 931
EcoRI GAATTC 1 cut(s) 1019
EcoRII CCWGG 2 cut(s) 390, 712
FaeI CATG 2 cut(s) 899, 1027
FaiI YATR 7 cut(s) 39, 203, 293, 744, 897, 1025, 1077
FaqI GGGAC 1 cut(s) 782
FatI CATG 2 cut(s) 895, 1023
FauI CCCGC 2 cut(s) 669, 678
FbaI TGATCA 1 cut(s) 813
FblI GTMKAC 1 cut(s) 99
FokI GGATG 4 cut(s) 119, 530, 797, 1064
GlaI GCGC 5 cut(s) 250, 366, 449, 599, 601
GsaI CCCAGC 3 cut(s) 557, 572, 593
GsuI CTGGAG 2 cut(s) 735, 818
HaeIII GGCC 5 cut(s) 93, 335, 390, 474, 650
HapII CCGG 6 cut(s) 482, 503, 801, 874, 965, 980
HgaI GACGC 1 cut(s) 474
HhaI GCGC 5 cut(s) 251, 367, 450, 600, 602
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 2 cut(s) 899, 1027
Hin6I GCGC 5 cut(s) 249, 365, 448, 598, 600
HinP1I GCGC 5 cut(s) 249, 365, 448, 598, 600
HincII GTYRAC 4 cut(s) 100, 235, 418, 723
HindII GTYRAC 4 cut(s) 100, 235, 418, 723
HinfI GANTC 4 cut(s) 71, 84, 101, 126
HpaII CCGG 6 cut(s) 482, 503, 801, 874, 965, 980
HphI GGTGA 7 cut(s) 271, 475, 589, 652, 836, 863, 1078
Hpy166II GTNNAC 5 cut(s) 100, 235, 418, 426, 723
Hpy188I TCNGA 5 cut(s) 83, 214, 490, 927, 1018
Hpy188III TCNNGA 9 cut(s) 274, 308, 503, 629, 737, 835, 910, 1024, 1039
Hpy8I GTNNAC 5 cut(s) 100, 235, 418, 426, 723
Hpy99I CGWCG 7 cut(s) 71, 101, 301, 355, 494, 497, 500
HpyAV CCTTC 4 cut(s) 346, 578, 607, 626
HpyCH4III ACNGT 5 cut(s) 301, 314, 377, 688, 707
HpyCH4IV ACGT 6 cut(s) 414, 498, 530, 623, 698, 819
HpyCH4V TGCA 3 cut(s) 163, 757, 1084
HpyF3I CTNAG 1 cut(s) 727
HpySE526I ACGT 6 cut(s) 414, 498, 530, 623, 698, 819
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 2 cut(s) 899, 1027
HspAI GCGC 5 cut(s) 249, 365, 448, 598, 600
Kpn2I TCCGGA 1 cut(s) 502
KpnI GGTACC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 813
LmnI GCTCC 3 cut(s) 227, 562, 967
Lsp1109I GCAGC 5 cut(s) 175, 358, 552, 685, 1068
MaeII ACGT 6 cut(s) 414, 498, 530, 623, 698, 819
MaeIII GTNAC 3 cut(s) 526, 699, 707
MbiI CCGCTC 1 cut(s) 222
MboII GAAGA 4 cut(s) 62, 121, 262, 1027
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 2 cut(s) 671, 808
MluCI AATT 5 cut(s) 62, 158, 522, 1019, 1069
MlyI GAGTC 3 cut(s) 65, 93, 95
MmeI TCCRAC 3 cut(s) 435, 513, 571
MroI TCCGGA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 762
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 6 cut(s) 482, 503, 801, 874, 965, 980
MspR9I CCNGG 4 cut(s) 392, 714, 801, 875
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 2 cut(s) 392, 714
MvnI CGCG 6 cut(s) 251, 367, 450, 600, 602, 904
NciI CCSGG 2 cut(s) 801, 875
NlaIII CATG 2 cut(s) 899, 1027
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 3 cut(s) 526, 699, 707
PagI TCATGA 1 cut(s) 1023
PauI GCGCGC 1 cut(s) 598
PceI AGGCCT 2 cut(s) 93, 335
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 126
Pfl23II CGTACG 1 cut(s) 314
PflFI GACNNNGTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 553
Ple19I CGATCG 3 cut(s) 217, 321, 915
PleI GAGTC 3 cut(s) 65, 92, 95
PpsI GAGTC 3 cut(s) 65, 92, 95
PshAI GACNNNNGTC 2 cut(s) 105, 356
Psp1406I AACGTT 2 cut(s) 414, 819
Psp6I CCWGG 2 cut(s) 390, 712
PspFI CCCAGC 3 cut(s) 553, 568, 589
PspGI CCWGG 2 cut(s) 390, 712
PspLI CGTACG 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 5 cut(s) 310, 388, 473, 649, 956
PstI CTGCAG 1 cut(s) 1086
PsuI RGATCY 1 cut(s) 543
PsyI GACNNNGTC 1 cut(s) 239
PteI GCGCGC 1 cut(s) 598
PvuI CGATCG 3 cut(s) 217, 321, 915
PvuII CAGCTG 1 cut(s) 444
RsaI GTAC 3 cut(s) 16, 316, 425
RsaNI GTAC 3 cut(s) 15, 315, 424
RseI CAYNNNNRTG 1 cut(s) 747
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 762
Sau96I GGNCC 5 cut(s) 310, 388, 473, 649, 956
SchI GAGTC 3 cut(s) 65, 93, 95
ScrFI CCNGG 4 cut(s) 392, 714, 801, 875
SduI GDGCHC 2 cut(s) 671, 808
SfcI CTRYAG 1 cut(s) 1082
SinI GGWCC 2 cut(s) 310, 956
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 5 cut(s) 62, 158, 522, 1019, 1069
SseBI AGGCCT 2 cut(s) 93, 335
StuI AGGCCT 2 cut(s) 93, 335
StyD4I CCNGG 4 cut(s) 390, 712, 799, 873
TaaI ACNGT 5 cut(s) 301, 314, 377, 688, 707
TaiI ACGT 6 cut(s) 417, 501, 533, 626, 701, 822
TaqI TCGA 4 cut(s) 43, 66, 99, 911
TasI AATT 5 cut(s) 62, 158, 522, 1019, 1069
TatI WGTACW 1 cut(s) 423
TauI GCSGC 8 cut(s) 8, 222, 249, 258, 326, 440, 650, 904
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 3 cut(s) 526, 699, 707
TseI GCWGC 5 cut(s) 163, 346, 565, 673, 1081
Tsp45I GTSAC 3 cut(s) 526, 699, 707
TspDTI ATGAA 3 cut(s) 121, 534, 1012
TspGWI ACGGA 2 cut(s) 368, 948
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 310, 956
XapI RAATTY 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.