Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018511

Physical Location & Seq

Genomic Coordinates Forward (+)

45484156 .. 45484482

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1330300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTCATCGGGGTACCGGATATGGATGGTCAATATCTAAGTGGATTCACTCTAAATGCTGATGTGAACCAGGGAACAAAATATTTTTCTTATAGGTTTTTTGACAATACGCTTTCATATTTTGGCATCTCTTCGGACGGAGTACTGAGTCTTAAGCTTTCGGACAATGGCAGCAACTGGTGGCTAAGCTGGGAGGCACTGGTGAATCCATGTGAAATTTATGGAACATGTGGAGTTAATGGTGTCTGCAAAGGTTCTGAATCTCCAAATCCAAATTGCGAGTGTTTGAAAGAGTTCGAAATGGAAACACGACTGGAGGGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

109

Amino Acids

12.01

Weight (kDa)

4.17

Isoelectric Point (pI)

14.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	1 - 101	4.8e-19	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018511)

Species	Orthologous Gene IDs
malus_domestica	MD05G1330300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319271
rosa_laevigata	RLG00000030496 RLG00000031312
rosa_multiflora	Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa	Rorug03G0216400
rosa_samantha	Rh1BG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	2 cut(s)	15, 144
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	157, 189
AluI	AGCT	2 cut(s)	157, 189
AlwNI	CAGNNNCTG	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	293
Asp718I	GGTACC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	172
BlpI	GCTNAGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	173
BmcAI	AGTACT	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	1 cut(s)	308
Bse1I	ACTGG	3 cut(s)	182, 204, 318
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	3 cut(s)	182, 204, 318
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1720I	GCTNAGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	15
BspT104I	TTCGAA	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	182, 204, 318
BssECI	CCNNGG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	136
BstAFI	CTTAAG	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	38, 146, 185
BstF5I	GGATG	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	14, 143
CviAII	CATG	2 cut(s)	210, 228
CviJI	RGCY	3 cut(s)	157, 184, 189
CviKI_1	RGCY	3 cut(s)	157, 184, 189
CviQI	GTAC	2 cut(s)	14, 143
DdeI	CTNAG	3 cut(s)	38, 146, 185
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	213, 231
FaiI	YATR	6 cut(s)	23, 93, 118, 211, 222, 229
FatI	CATG	2 cut(s)	209, 227
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	172
GsaI	CCCAGC	1 cut(s)	193
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	2 cut(s)	213, 231
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	45, 148, 205, 260
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	136, 163, 259
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	249
HpyF3I	CTNAG	3 cut(s)	38, 146, 185
Hsp92II	CATG	2 cut(s)	213, 231
KpnI	GGTACC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	30, 56, 83, 163, 175, 185, 299
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	123
MluCI	AATT	2 cut(s)	216, 274
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	187, 310
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	2 cut(s)	153, 237
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
NlaIII	CATG	2 cut(s)	213, 231
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	297
PciI	ACATGT	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	45, 205, 260
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PscI	ACATGT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	177
RsaI	GTAC	2 cut(s)	15, 144
RsaNI	GTAC	2 cut(s)	14, 143
SaqAI	TTAA	2 cut(s)	153, 237
SatI	GCNGC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	144
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	4 cut(s)	98, 159, 191, 256
SfaNI	GCATC	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	216, 274
SspI	AATATT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	216, 274
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	3 cut(s)	45, 205, 260
Tru1I	TTAA	2 cut(s)	153, 237
Tru9I	TTAA	2 cut(s)	153, 237
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	204
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.