RLG00000030496

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018511
Physical Location & Seq
Forward (+)
62508029 .. 62510651
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030496

Sequence Viewer

Length: 768 bp
ATGCCGGGACAAGTGGTCATATGGAATAAATCAAAGTTCAACCGATCAACTCGCCACTGGAGAACTGGGCCATGGGATAAATCAAAGTTCAAAATCGGTGTACTTAATATGGATAACCAATATCTAAGTGAATTCAATCTGGATGAAAATGTGGAGCAGGGAACAATTCATTTCTCTTTTACTGTTTTTAACAAGTATCTTACATATCTGGAGCTCTCTTCAGATGGAAATGCAAAGCTTATGCGTTCAAACAATGGTGGGAACTGGTCTCTCCAGTGGGAGGCACTGCACAATCAATGTGACTATTATGGAAAATGTGGAACCTTTGGGGTTCGCAAAGTTTTGAAACCTCCAAAATTCATAAAAACAGCTTCAGAATCTCCAATCAGCTGCAAGTGTTTGATAGGGTTTGAACCAAAGACTGATCACGAATGGAGCAAAGGAAACTGGACAGGAGGGTGTGTGAGAAAAACAAAATTAGTTTGTGAGAGCCACACGATCGCGAATAAGTCATCTGTCTCATCGAAAAGAAAACAAGATGAGTTTAGGAAGATGGGTAAACTAGAAGAAGGGAAGGAAATTGCAGTAAAACGACTATTCAGTAGCTCAGGGCAAGGCAAGGAAGAGATCAAGAATGAAATGCTGTTGATATCCAAGCTCCAACCCAAAAATCTTGATGAACCCGTCGATAGGCCAACCATGGTTGAGGTCGTTTTAATGCCAAGTAGTGAGACAGATGCCCCACAGGCCACAACCGAAGCAGCCTAA

Protein Analysis

256

Amino Acids

28.95

Weight (kDa)

9.1

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 20 - 140 1.3e-20 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018511)

Species Orthologous Gene IDs
malus_domestica MD05G1330300.v1.1
rosa_chinensis RchiOBHm_Chr1g0319271
rosa_laevigata RLG00000030496 RLG00000031312
rosa_multiflora Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa Rorug03G0216400
rosa_samantha Rh1BG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 503
AcsI RAATTY 2 cut(s) 131, 356
AcuI CTGAAG 2 cut(s) 204, 357
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 280, 690
AgsI TTSAA 6 cut(s) 40, 91, 136, 249, 346, 413
AhdI GACNNNNNGTC 1 cut(s) 14
AluBI AGCT 6 cut(s) 214, 238, 371, 390, 606, 658
AluI AGCT 6 cut(s) 214, 238, 371, 390, 606, 658
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 3 cut(s) 273, 523, 725
AoxI GGCC 3 cut(s) 68, 692, 747
ApeKI GCWGC 2 cut(s) 390, 761
ApoI RAATTY 2 cut(s) 131, 356
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 6
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 377
BccI CCATC 2 cut(s) 218, 547
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 3 cut(s) 273, 523, 725
BfaI CTAG 1 cut(s) 563
BglI GCCNNNNNGGC 1 cut(s) 746
BisI GCNGC 2 cut(s) 391, 762
BlsI GCNGC 2 cut(s) 392, 763
Bme1390I CCNGG 1 cut(s) 6
BmeRI GACNNNNNGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 727
BmuI ACTGGG 1 cut(s) 75
BpmI CTGGAG 3 cut(s) 79, 230, 257
Bpu10I CCTNAGC 1 cut(s) 607
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 71, 699
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 690
Bse1I ACTGG 5 cut(s) 62, 70, 269, 274, 452
BseDI CCNNGG 2 cut(s) 71, 699
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 280, 690
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 5 cut(s) 62, 70, 269, 274, 452
BseXI GCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 3 cut(s) 70, 694, 749
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 280, 690
BsmAI GTCTC 3 cut(s) 273, 523, 725
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 3 cut(s) 70, 694, 749
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 44, 424, 498, 627
Bsp19I CCATGG 2 cut(s) 71, 699
Bsp68I TCGCGA 1 cut(s) 503
BspANI GGCC 3 cut(s) 70, 694, 749
BspCNI CTCAG 1 cut(s) 620
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 5 cut(s) 62, 70, 269, 274, 452
BssECI CCNNGG 2 cut(s) 71, 699
BssMI GATC 4 cut(s) 44, 424, 498, 627
BssT1I CCWWGG 2 cut(s) 71, 699
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 223, 618
BstDEI CTNAG 2 cut(s) 125, 607
BstDSI CCRYGG 2 cut(s) 71, 699
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 503
BstKTI GATC 4 cut(s) 47, 427, 501, 630
BstMAI GTCTC 3 cut(s) 273, 523, 725
BstMBI GATC 4 cut(s) 44, 424, 498, 627
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 377
BsuRI GGCC 3 cut(s) 70, 694, 749
BtgI CCRYGG 2 cut(s) 71, 699
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 3 cut(s) 55, 281, 284
BtuMI TCGCGA 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 101
CviAII CATG 2 cut(s) 72, 700
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 125, 607
DpnI GATC 4 cut(s) 46, 426, 500, 629
DpnII GATC 4 cut(s) 44, 424, 498, 627
DriI GACNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 2 cut(s) 223, 618
Eam1105I GACNNNNNGTC 1 cut(s) 14
EarI CTCTTC 2 cut(s) 223, 618
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 71, 699
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 204, 357
EcoICRI GAGCTC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 131
EcoRV GATATC 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 71, 699
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 71, 699
FaeI CATG 2 cut(s) 75, 703
FaiI YATR 9 cut(s) 20, 22, 73, 110, 205, 242, 309, 362, 701
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 71, 699
FauNDI CATATG 1 cut(s) 20
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 391, 762
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 391, 762
FspBI CTAG 1 cut(s) 563
GluI GCNGC 2 cut(s) 391, 762
GsuI CTGGAG 3 cut(s) 79, 230, 257
HaeIII GGCC 3 cut(s) 70, 694, 749
HapII CCGG 1 cut(s) 5
Hin1II CATG 2 cut(s) 75, 703
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 377
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 101, 560
Hpy188I TCNGA 2 cut(s) 223, 376
Hpy188III TCNNGA 6 cut(s) 140, 209, 428, 502, 631, 674
Hpy8I GTNNAC 2 cut(s) 101, 560
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 2 cut(s) 563, 568
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 233, 289, 393, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 2 cut(s) 125, 607
Hsp92II CATG 2 cut(s) 75, 703
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 44, 424, 498, 627
LmnI GCTCC 4 cut(s) 154, 211, 435, 663
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 1 cut(s) 299
MalI GATC 4 cut(s) 46, 426, 500, 629
MboI GATC 4 cut(s) 44, 424, 498, 627
MboII GAAGA 4 cut(s) 210, 562, 578, 635
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 5 cut(s) 131, 165, 356, 476, 579
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 4 cut(s) 274, 360, 449, 700
MseI TTAA 3 cut(s) 105, 189, 716
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 1 cut(s) 6
NcoI CCATGG 2 cut(s) 71, 699
NdeI CATATG 1 cut(s) 20
NdeII GATC 4 cut(s) 44, 424, 498, 627
NlaIII CATG 2 cut(s) 75, 703
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 299
NruI TCGCGA 1 cut(s) 503
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 392, 763
Ple19I CGATCG 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 68
PvuI CGATCG 1 cut(s) 501
PvuII CAGCTG 1 cut(s) 390
RruI TCGCGA 1 cut(s) 503
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 105, 189, 716
SatI GCNGC 2 cut(s) 391, 762
Sau3AI GATC 4 cut(s) 44, 424, 498, 627
Sau96I GGNCC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 216
SetI ASST 9 cut(s) 216, 240, 326, 352, 373, 392, 608, 660, 711
SfaNI GCATC 1 cut(s) 727
Sse9I AATT 5 cut(s) 131, 165, 356, 476, 579
SspMI CTAG 1 cut(s) 563
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 2 cut(s) 71, 699
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 524, 687
TasI AATT 5 cut(s) 131, 165, 356, 476, 579
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 3 cut(s) 105, 189, 716
Tru9I TTAA 3 cut(s) 105, 189, 716
TscAI CASTG 3 cut(s) 62, 281, 291
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 390, 761
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 5 cut(s) 158, 159, 349, 651, 693
TspRI CASTG 3 cut(s) 62, 281, 291
XapI RAATTY 2 cut(s) 131, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.