Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018837.1

Orthogroup ID

OG0018511

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1140

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 760 bp

atgccagacatggatgatcaatatcttagtggatttaatctagaagataatgtggaacagggaacaaagtatttctcatttaaattatttgacacttccgcagcatatctagacatctcttcacagggaaaaccaaagcttatgttttcaaaaaatggtcggaactggtcagtctactgggagacaaaaaagaataaatgtgacatctatggagcatgtggaccttttggggtttgcaacatctctgaatctccaatctgcaagtgtttgaaagggtttgtgccaagttcaaaacaggaatggagcaaaggaaaccggacagctgggtgcgtaaggcaaaccgacttgttctgtgagagacaaacaaataagaagtcatactcattgcaaggaaaacaaggttacaatgatgataagttttggaagatgataggggtaaaagtgccagattatcatcagtataatacatctttgaatactcatggtgacatcaatgactgcaagatacagtgcctaaataattgttcttgcctggcttatgcatttcttaataatattgggtgtttgacctggtccaaacaccttatagatatacaggagttctccgagggaggtgttgatctttatattcgcctagcatgcaaagaattaggtgaaggaaagccaattaagtttattgccagccttacagctgttggtataatgataatcttggttgtcatagcggtcggtttgcaaagcttgcgagctaaccaaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

253

Amino Acids

28.46

Weight (kDa)

8.48

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018511)

Species	Orthologous Gene IDs
malus_domestica	MD05G1330300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319271
rosa_laevigata	RLG00000030496 RLG00000031312
rosa_multiflora	Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa	Rorug03G0216400
rosa_samantha	Rh1BG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	2 cut(s)	99, 725
AgsI	TTSAA	4 cut(s)	150, 271, 291, 475
AjnI	CCWGG	2 cut(s)	531, 569
AluBI	AGCT	5 cut(s)	139, 323, 692, 741, 749
AluI	AGCT	5 cut(s)	139, 323, 692, 741, 749
Alw26I	GTCTC	2 cut(s)	176, 352
ApeKI	GCWGC	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspS9I	GGNCC	2 cut(s)	221, 573
AsuHPI	GGTGA	2 cut(s)	497, 665
AvaII	GGWCC	2 cut(s)	221, 573
BbvI	GCAGC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	533, 571
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	176, 352
BfaI	CTAG	3 cut(s)	41, 110, 635
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	533, 571
Bme18I	GGWCC	2 cut(s)	221, 573
BmgT120I	GGNCC	2 cut(s)	221, 573
BmrFI	CCNGG	2 cut(s)	533, 571
BmrI	ACTGGG	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	187
BsaBI	GATNNNNATC	2 cut(s)	21, 453
BsaJI	CCNNGG	1 cut(s)	606
BsaWI	WCCGGW	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	170, 182
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	2 cut(s)	21, 453
BseBI	CCWGG	2 cut(s)	533, 571
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	2 cut(s)	21, 453
BseMI	GCAATG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	170, 182
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	729
BsiEI	CGRYCG	1 cut(s)	729
BsiSI	CCGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	176, 352
Bsp143I	GATC	2 cut(s)	16, 619
BspACI	CCGC	2 cut(s)	99, 725
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	170, 182
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	2 cut(s)	16, 619
Bst2UI	CCWGG	2 cut(s)	533, 571
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstC8I	GCNNGC	4 cut(s)	640, 682, 743, 747
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	2 cut(s)	19, 622
BstMAI	GTCTC	2 cut(s)	176, 352
BstMBI	GATC	2 cut(s)	16, 619
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	2 cut(s)	639, 742
BstNI	CCWGG	2 cut(s)	533, 571
BstNSI	RCATGY	2 cut(s)	219, 642
BstSCI	CCNGG	2 cut(s)	531, 569
BstV1I	GCAGC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	4 cut(s)	640, 682, 743, 747
Cfr13I	GGNCC	2 cut(s)	221, 573
CsiI	ACCWGGT	1 cut(s)	569
CviAII	CATG	4 cut(s)	10, 216, 482, 639
CviJI	RGCY	8 cut(s)	139, 323, 536, 664, 684, 692, 741, 749
CviKI_1	RGCY	8 cut(s)	139, 323, 536, 664, 684, 692, 741, 749
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	2 cut(s)	18, 621
DpnII	GATC	2 cut(s)	16, 619
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	221, 573
EcoRII	CCWGG	2 cut(s)	531, 569
EcoT22I	ATGCAT	1 cut(s)	544
FaeI	CATG	4 cut(s)	13, 219, 485, 642
FatI	CATG	4 cut(s)	9, 215, 481, 638
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	3 cut(s)	41, 110, 635
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	327
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	4 cut(s)	13, 219, 485, 642
HindIII	AAGCTT	2 cut(s)	137, 739
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	497, 665
Hpy166II	GTNNAC	2 cut(s)	175, 221
Hpy188I	TCNGA	3 cut(s)	162, 247, 607
Hpy188III	TCNNGA	2 cut(s)	41, 110
Hpy8I	GTNNAC	2 cut(s)	175, 221
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4V	TGCA	7 cut(s)	237, 261, 388, 501, 542, 642, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	639, 742
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	13, 219, 485, 642
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 619
LmnI	GCTCC	2 cut(s)	212, 303
Lsp1109I	GCAGC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	569
MaeI	CTAG	3 cut(s)	41, 110, 635
MaeIII	GTNAC	3 cut(s)	200, 401, 485
MalI	GATC	2 cut(s)	18, 621
MboI	GATC	2 cut(s)	16, 619
MboII	GAAGA	3 cut(s)	56, 111, 436
MluCI	AATT	4 cut(s)	83, 520, 647, 666
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	2 cut(s)	601, 605
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	4 cut(s)	36, 81, 549, 669
MspA1I	CMGCKG	2 cut(s)	323, 692
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	2 cut(s)	533, 571
MvaI	CCWGG	2 cut(s)	533, 571
MwoI	GCNNNNNNNGC	2 cut(s)	639, 742
NdeII	GATC	2 cut(s)	16, 619
NlaIII	CATG	4 cut(s)	13, 219, 485, 642
NmuCI	GTSAC	2 cut(s)	200, 485
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	2 cut(s)	219, 642
PaeI	GCATGC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	531, 569
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	531, 569
PspPI	GGNCC	2 cut(s)	221, 573
PsyI	GACNNNGTC	1 cut(s)	571
PvuII	CAGCTG	2 cut(s)	323, 692
SaqAI	TTAA	4 cut(s)	36, 81, 549, 669
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	16, 619
Sau96I	GGNCC	2 cut(s)	221, 573
ScrFI	CCNGG	2 cut(s)	533, 571
SexAI	ACCWGGT	1 cut(s)	569
SinI	GGWCC	2 cut(s)	221, 573
SmiI	ATTTAAAT	1 cut(s)	82
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	4 cut(s)	83, 520, 647, 666
SsiI	CCGC	2 cut(s)	99, 725
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	3 cut(s)	41, 110, 635
StyD4I	CCNGG	2 cut(s)	531, 569
SwaI	ATTTAAAT	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	510
TasI	AATT	4 cut(s)	83, 520, 647, 666
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	4 cut(s)	36, 81, 549, 669
Tru9I	TTAA	4 cut(s)	36, 81, 549, 669
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	2 cut(s)	200, 485
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	2 cut(s)	200, 485
TspRI	CASTG	1 cut(s)	515
Tth111I	GACNNNGTC	1 cut(s)	571
VpaK11BI	GGWCC	2 cut(s)	221, 573
XbaI	TCTAGA	2 cut(s)	40, 109
XceI	RCATGY	2 cut(s)	219, 642
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	3 cut(s)	41, 110, 635
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.